Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G23080

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:1902171: regulation of tocopherol cyclase activity0.00E+00
3GO:0045014: negative regulation of transcription by glucose0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:0033231: carbohydrate export0.00E+00
6GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
7GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
8GO:0015995: chlorophyll biosynthetic process4.21E-08
9GO:0015979: photosynthesis2.26E-06
10GO:0000476: maturation of 4.5S rRNA8.61E-05
11GO:0000967: rRNA 5'-end processing8.61E-05
12GO:0046467: membrane lipid biosynthetic process8.61E-05
13GO:0010480: microsporocyte differentiation8.61E-05
14GO:0043007: maintenance of rDNA8.61E-05
15GO:0000305: response to oxygen radical8.61E-05
16GO:1902334: fructose export from vacuole to cytoplasm8.61E-05
17GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process8.61E-05
18GO:0015755: fructose transport8.61E-05
19GO:0010205: photoinhibition8.63E-05
20GO:0010207: photosystem II assembly1.86E-04
21GO:0035304: regulation of protein dephosphorylation2.04E-04
22GO:0034470: ncRNA processing2.04E-04
23GO:0010306: rhamnogalacturonan II biosynthetic process4.92E-04
24GO:0051513: regulation of monopolar cell growth4.92E-04
25GO:0080170: hydrogen peroxide transmembrane transport4.92E-04
26GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity4.92E-04
27GO:0030104: water homeostasis6.55E-04
28GO:0009765: photosynthesis, light harvesting6.55E-04
29GO:0006749: glutathione metabolic process6.55E-04
30GO:0040008: regulation of growth7.74E-04
31GO:0009734: auxin-activated signaling pathway8.38E-04
32GO:0009913: epidermal cell differentiation1.01E-03
33GO:0006655: phosphatidylglycerol biosynthetic process1.01E-03
34GO:0042549: photosystem II stabilization1.01E-03
35GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.01E-03
36GO:0007035: vacuolar acidification1.01E-03
37GO:0009228: thiamine biosynthetic process1.01E-03
38GO:0009942: longitudinal axis specification1.20E-03
39GO:0010189: vitamin E biosynthetic process1.20E-03
40GO:0010019: chloroplast-nucleus signaling pathway1.20E-03
41GO:0009645: response to low light intensity stimulus1.41E-03
42GO:0048437: floral organ development1.41E-03
43GO:0009769: photosynthesis, light harvesting in photosystem II1.41E-03
44GO:0050829: defense response to Gram-negative bacterium1.41E-03
45GO:0034599: cellular response to oxidative stress1.54E-03
46GO:0050821: protein stabilization1.63E-03
47GO:0005978: glycogen biosynthetic process1.63E-03
48GO:0007389: pattern specification process1.86E-03
49GO:0009657: plastid organization1.86E-03
50GO:0010114: response to red light1.89E-03
51GO:0010206: photosystem II repair2.10E-03
52GO:0006783: heme biosynthetic process2.10E-03
53GO:0048589: developmental growth2.10E-03
54GO:0009245: lipid A biosynthetic process2.10E-03
55GO:0009664: plant-type cell wall organization2.37E-03
56GO:0006782: protoporphyrinogen IX biosynthetic process2.61E-03
57GO:0006995: cellular response to nitrogen starvation2.61E-03
58GO:0019684: photosynthesis, light reaction2.87E-03
59GO:0043085: positive regulation of catalytic activity2.87E-03
60GO:1903507: negative regulation of nucleic acid-templated transcription2.87E-03
61GO:0009750: response to fructose2.87E-03
62GO:0048229: gametophyte development2.87E-03
63GO:0009698: phenylpropanoid metabolic process2.87E-03
64GO:0010152: pollen maturation3.15E-03
65GO:0016024: CDP-diacylglycerol biosynthetic process3.15E-03
66GO:0010075: regulation of meristem growth3.43E-03
67GO:0009934: regulation of meristem structural organization3.73E-03
68GO:0010030: positive regulation of seed germination4.03E-03
69GO:0006636: unsaturated fatty acid biosynthetic process4.34E-03
70GO:0006289: nucleotide-excision repair4.65E-03
71GO:0009768: photosynthesis, light harvesting in photosystem I4.98E-03
72GO:0007017: microtubule-based process4.98E-03
73GO:0016114: terpenoid biosynthetic process5.32E-03
74GO:0015992: proton transport5.32E-03
75GO:0051260: protein homooligomerization5.32E-03
76GO:0048511: rhythmic process5.32E-03
77GO:0009269: response to desiccation5.32E-03
78GO:0009735: response to cytokinin5.55E-03
79GO:0006633: fatty acid biosynthetic process5.63E-03
80GO:2000022: regulation of jasmonic acid mediated signaling pathway5.66E-03
81GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.01E-03
82GO:0007623: circadian rhythm6.18E-03
83GO:0048443: stamen development6.36E-03
84GO:0070417: cellular response to cold6.73E-03
85GO:0009789: positive regulation of abscisic acid-activated signaling pathway6.73E-03
86GO:0034220: ion transmembrane transport7.10E-03
87GO:0048653: anther development7.10E-03
88GO:0042631: cellular response to water deprivation7.10E-03
89GO:0042335: cuticle development7.10E-03
90GO:0048868: pollen tube development7.48E-03
91GO:0009741: response to brassinosteroid7.48E-03
92GO:0042752: regulation of circadian rhythm7.87E-03
93GO:0009646: response to absence of light7.87E-03
94GO:0048825: cotyledon development8.26E-03
95GO:0019252: starch biosynthetic process8.26E-03
96GO:0000302: response to reactive oxygen species8.66E-03
97GO:0048510: regulation of timing of transition from vegetative to reproductive phase8.66E-03
98GO:0010193: response to ozone8.66E-03
99GO:0010583: response to cyclopentenone9.07E-03
100GO:0009826: unidimensional cell growth9.21E-03
101GO:0007275: multicellular organism development9.57E-03
102GO:0009828: plant-type cell wall loosening9.91E-03
103GO:0010252: auxin homeostasis9.91E-03
104GO:0009627: systemic acquired resistance1.21E-02
105GO:0009793: embryo development ending in seed dormancy1.22E-02
106GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.23E-02
107GO:0018298: protein-chromophore linkage1.35E-02
108GO:0000160: phosphorelay signal transduction system1.40E-02
109GO:0045454: cell redox homeostasis1.42E-02
110GO:0010218: response to far red light1.45E-02
111GO:0009631: cold acclimation1.50E-02
112GO:0009637: response to blue light1.60E-02
113GO:0006629: lipid metabolic process1.76E-02
114GO:0009733: response to auxin1.76E-02
115GO:0009926: auxin polar transport1.92E-02
116GO:0009640: photomorphogenesis1.92E-02
117GO:0009644: response to high light intensity2.02E-02
118GO:0031347: regulation of defense response2.19E-02
119GO:0009736: cytokinin-activated signaling pathway2.37E-02
120GO:0010224: response to UV-B2.43E-02
121GO:0006417: regulation of translation2.55E-02
122GO:0006468: protein phosphorylation2.60E-02
123GO:0009740: gibberellic acid mediated signaling pathway2.92E-02
124GO:0042545: cell wall modification2.98E-02
125GO:0006396: RNA processing3.11E-02
126GO:0009416: response to light stimulus3.12E-02
127GO:0009742: brassinosteroid mediated signaling pathway3.17E-02
128GO:0009611: response to wounding3.19E-02
129GO:0009845: seed germination3.78E-02
130GO:0042744: hydrogen peroxide catabolic process3.92E-02
131GO:0045490: pectin catabolic process4.49E-02
132GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.86E-02
RankGO TermAdjusted P value
1GO:0045550: geranylgeranyl reductase activity0.00E+00
2GO:0015284: fructose uniporter activity0.00E+00
3GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
4GO:0046906: tetrapyrrole binding8.61E-05
5GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity8.61E-05
6GO:0010242: oxygen evolving activity8.61E-05
7GO:0004853: uroporphyrinogen decarboxylase activity8.61E-05
8GO:0005353: fructose transmembrane transporter activity2.04E-04
9GO:0004362: glutathione-disulfide reductase activity2.04E-04
10GO:0016868: intramolecular transferase activity, phosphotransferases2.04E-04
11GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity2.04E-04
12GO:0004312: fatty acid synthase activity2.04E-04
13GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity2.04E-04
14GO:0005515: protein binding2.49E-04
15GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity3.42E-04
16GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor4.92E-04
17GO:0016851: magnesium chelatase activity4.92E-04
18GO:0070628: proteasome binding6.55E-04
19GO:0008878: glucose-1-phosphate adenylyltransferase activity6.55E-04
20GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity6.55E-04
21GO:0010011: auxin binding6.55E-04
22GO:0031593: polyubiquitin binding1.01E-03
23GO:0031177: phosphopantetheine binding1.01E-03
24GO:0004130: cytochrome-c peroxidase activity1.01E-03
25GO:0000035: acyl binding1.20E-03
26GO:0019899: enzyme binding1.41E-03
27GO:0004712: protein serine/threonine/tyrosine kinase activity1.61E-03
28GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.63E-03
29GO:0071949: FAD binding2.10E-03
30GO:0009672: auxin:proton symporter activity2.35E-03
31GO:0046961: proton-transporting ATPase activity, rotational mechanism2.87E-03
32GO:0047372: acylglycerol lipase activity2.87E-03
33GO:0031072: heat shock protein binding3.43E-03
34GO:0010329: auxin efflux transmembrane transporter activity3.43E-03
35GO:0008266: poly(U) RNA binding3.73E-03
36GO:0051119: sugar transmembrane transporter activity4.03E-03
37GO:0031409: pigment binding4.34E-03
38GO:0043130: ubiquitin binding4.65E-03
39GO:0003714: transcription corepressor activity4.65E-03
40GO:0033612: receptor serine/threonine kinase binding5.32E-03
41GO:0003756: protein disulfide isomerase activity6.36E-03
42GO:0003727: single-stranded RNA binding6.36E-03
43GO:0000156: phosphorelay response regulator activity9.48E-03
44GO:0003684: damaged DNA binding9.91E-03
45GO:0005200: structural constituent of cytoskeleton1.03E-02
46GO:0015250: water channel activity1.12E-02
47GO:0016168: chlorophyll binding1.17E-02
48GO:0005096: GTPase activator activity1.40E-02
49GO:0030145: manganese ion binding1.50E-02
50GO:0050661: NADP binding1.76E-02
51GO:0004185: serine-type carboxypeptidase activity1.92E-02
52GO:0043621: protein self-association2.02E-02
53GO:0016298: lipase activity2.43E-02
54GO:0045330: aspartyl esterase activity2.55E-02
55GO:0030599: pectinesterase activity2.92E-02
56GO:0051082: unfolded protein binding3.04E-02
57GO:0016746: transferase activity, transferring acyl groups3.11E-02
58GO:0016787: hydrolase activity3.95E-02
59GO:0015144: carbohydrate transmembrane transporter activity4.06E-02
60GO:0046910: pectinesterase inhibitor activity4.27E-02
61GO:0005351: sugar:proton symporter activity4.42E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0009507: chloroplast6.25E-14
4GO:0009534: chloroplast thylakoid1.16E-12
5GO:0009535: chloroplast thylakoid membrane1.59E-10
6GO:0009570: chloroplast stroma9.32E-10
7GO:0010287: plastoglobule1.99E-06
8GO:0030095: chloroplast photosystem II3.81E-06
9GO:0009579: thylakoid3.85E-05
10GO:0009538: photosystem I reaction center4.50E-05
11GO:0009543: chloroplast thylakoid lumen4.81E-05
12GO:0009941: chloroplast envelope5.57E-05
13GO:0043674: columella8.61E-05
14GO:0031977: thylakoid lumen1.53E-04
15GO:0031969: chloroplast membrane2.70E-04
16GO:0010007: magnesium chelatase complex3.42E-04
17GO:0009531: secondary cell wall4.92E-04
18GO:0042646: plastid nucleoid4.92E-04
19GO:0009523: photosystem II6.01E-04
20GO:0009517: PSII associated light-harvesting complex II6.55E-04
21GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain8.29E-04
22GO:0055035: plastid thylakoid membrane8.29E-04
23GO:0016363: nuclear matrix1.20E-03
24GO:0042807: central vacuole1.41E-03
25GO:0009533: chloroplast stromal thylakoid1.41E-03
26GO:0045298: tubulin complex2.10E-03
27GO:0030076: light-harvesting complex4.03E-03
28GO:0009654: photosystem II oxygen evolving complex4.98E-03
29GO:0009705: plant-type vacuole membrane6.18E-03
30GO:0016020: membrane7.25E-03
31GO:0009522: photosystem I7.87E-03
32GO:0019898: extrinsic component of membrane8.26E-03
33GO:0071944: cell periphery9.48E-03
34GO:0005774: vacuolar membrane2.24E-02
35GO:0009706: chloroplast inner membrane3.04E-02
36GO:0005623: cell3.64E-02
37GO:0005773: vacuole4.17E-02
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Gene type



Gene DE type