co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G22310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031564: transcription antitermination	0.00E+00
2	GO:0007141: male meiosis I	0.00E+00
3	GO:0002191: cap-dependent translational initiation	0.00E+00
4	GO:0042430: indole-containing compound metabolic process	0.00E+00
5	GO:0072321: chaperone-mediated protein transport	0.00E+00
6	GO:0006422: aspartyl-tRNA aminoacylation	1.98E-04
7	GO:0080120: CAAX-box protein maturation	1.98E-04
8	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.98E-04
9	GO:0048508: embryonic meristem development	1.98E-04
10	GO:0006177: GMP biosynthetic process	1.98E-04
11	GO:0071586: CAAX-box protein processing	1.98E-04
12	GO:0000103: sulfate assimilation	3.43E-04
13	GO:0045454: cell redox homeostasis	4.12E-04
14	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.43E-04
15	GO:0009945: radial axis specification	4.43E-04
16	GO:0008535: respiratory chain complex IV assembly	4.43E-04
17	GO:0097054: L-glutamate biosynthetic process	4.43E-04
18	GO:0002221: pattern recognition receptor signaling pathway	4.43E-04
19	GO:0015914: phospholipid transport	4.43E-04
20	GO:0010155: regulation of proton transport	4.43E-04
21	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	4.43E-04
22	GO:0015706: nitrate transport	4.56E-04
23	GO:0006626: protein targeting to mitochondrion	5.18E-04
24	GO:0045039: protein import into mitochondrial inner membrane	7.22E-04
25	GO:0006421: asparaginyl-tRNA aminoacylation	7.22E-04
26	GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening	7.22E-04
27	GO:0010359: regulation of anion channel activity	7.22E-04
28	GO:0061158: 3'-UTR-mediated mRNA destabilization	7.22E-04
29	GO:0080055: low-affinity nitrate transport	7.22E-04
30	GO:0009410: response to xenobiotic stimulus	7.22E-04
31	GO:0007276: gamete generation	1.03E-03
32	GO:0006537: glutamate biosynthetic process	1.03E-03
33	GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery	1.03E-03
34	GO:0001676: long-chain fatty acid metabolic process	1.03E-03
35	GO:0033617: mitochondrial respiratory chain complex IV assembly	1.03E-03
36	GO:0007131: reciprocal meiotic recombination	1.05E-03
37	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	1.37E-03
38	GO:0080142: regulation of salicylic acid biosynthetic process	1.37E-03
39	GO:0019676: ammonia assimilation cycle	1.37E-03
40	GO:0046345: abscisic acid catabolic process	1.37E-03
41	GO:0045116: protein neddylation	1.74E-03
42	GO:0006564: L-serine biosynthetic process	1.74E-03
43	GO:0000302: response to reactive oxygen species	1.92E-03
44	GO:0048232: male gamete generation	2.14E-03
45	GO:0070814: hydrogen sulfide biosynthetic process	2.14E-03
46	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.14E-03
47	GO:0045040: protein import into mitochondrial outer membrane	2.14E-03
48	GO:1902456: regulation of stomatal opening	2.14E-03
49	GO:1900425: negative regulation of defense response to bacterium	2.14E-03
50	GO:0010405: arabinogalactan protein metabolic process	2.14E-03
51	GO:0001731: formation of translation preinitiation complex	2.14E-03
52	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.57E-03
53	GO:0009942: longitudinal axis specification	2.57E-03
54	GO:0043090: amino acid import	3.03E-03
55	GO:1900056: negative regulation of leaf senescence	3.03E-03
56	GO:0050790: regulation of catalytic activity	3.03E-03
57	GO:0042128: nitrate assimilation	3.07E-03
58	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.51E-03
59	GO:0009819: drought recovery	3.51E-03
60	GO:0006002: fructose 6-phosphate metabolic process	4.02E-03
61	GO:0046685: response to arsenic-containing substance	4.54E-03
62	GO:0009051: pentose-phosphate shunt, oxidative branch	4.54E-03
63	GO:0009821: alkaloid biosynthetic process	4.54E-03
64	GO:0090333: regulation of stomatal closure	4.54E-03
65	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.10E-03
66	GO:0006995: cellular response to nitrogen starvation	5.67E-03
67	GO:0051026: chiasma assembly	5.67E-03
68	GO:0042254: ribosome biogenesis	6.12E-03
69	GO:0010582: floral meristem determinacy	6.89E-03
70	GO:0006006: glucose metabolic process	7.52E-03
71	GO:0007034: vacuolar transport	8.19E-03
72	GO:0006446: regulation of translational initiation	8.19E-03
73	GO:0015031: protein transport	8.56E-03
74	GO:0046777: protein autophosphorylation	8.56E-03
75	GO:0010167: response to nitrate	8.87E-03
76	GO:0010053: root epidermal cell differentiation	8.87E-03
77	GO:0000027: ribosomal large subunit assembly	1.03E-02
78	GO:0009863: salicylic acid mediated signaling pathway	1.03E-02
79	GO:0030150: protein import into mitochondrial matrix	1.03E-02
80	GO:0006406: mRNA export from nucleus	1.03E-02
81	GO:0016575: histone deacetylation	1.10E-02
82	GO:0051302: regulation of cell division	1.10E-02
83	GO:0018105: peptidyl-serine phosphorylation	1.16E-02
84	GO:0009814: defense response, incompatible interaction	1.26E-02
85	GO:0080092: regulation of pollen tube growth	1.26E-02
86	GO:0009625: response to insect	1.34E-02
87	GO:0006012: galactose metabolic process	1.34E-02
88	GO:0006284: base-excision repair	1.42E-02
89	GO:0042631: cellular response to water deprivation	1.59E-02
90	GO:0042391: regulation of membrane potential	1.59E-02
91	GO:0006606: protein import into nucleus	1.59E-02
92	GO:0009790: embryo development	1.65E-02
93	GO:0006662: glycerol ether metabolic process	1.67E-02
94	GO:0009646: response to absence of light	1.76E-02
95	GO:0006623: protein targeting to vacuole	1.85E-02
96	GO:0010183: pollen tube guidance	1.85E-02
97	GO:0009414: response to water deprivation	1.89E-02
98	GO:0080156: mitochondrial mRNA modification	1.94E-02
99	GO:0002229: defense response to oomycetes	1.94E-02
100	GO:0010193: response to ozone	1.94E-02
101	GO:0010150: leaf senescence	1.95E-02
102	GO:0042742: defense response to bacterium	1.96E-02
103	GO:0010252: auxin homeostasis	2.23E-02
104	GO:0006310: DNA recombination	2.23E-02
105	GO:0008380: RNA splicing	2.33E-02
106	GO:0009617: response to bacterium	2.33E-02
107	GO:0051607: defense response to virus	2.42E-02
108	GO:0009615: response to virus	2.53E-02
109	GO:0009738: abscisic acid-activated signaling pathway	2.55E-02
110	GO:0009607: response to biotic stimulus	2.63E-02
111	GO:0008219: cell death	3.05E-02
112	GO:0006970: response to osmotic stress	3.25E-02
113	GO:0006499: N-terminal protein myristoylation	3.27E-02
114	GO:0009407: toxin catabolic process	3.27E-02
115	GO:0009631: cold acclimation	3.38E-02
116	GO:0010119: regulation of stomatal movement	3.38E-02
117	GO:0010043: response to zinc ion	3.38E-02
118	GO:0009723: response to ethylene	3.49E-02
119	GO:0006865: amino acid transport	3.50E-02
120	GO:0034599: cellular response to oxidative stress	3.73E-02
121	GO:0046686: response to cadmium ion	3.75E-02
122	GO:0055114: oxidation-reduction process	4.05E-02
123	GO:0006631: fatty acid metabolic process	4.08E-02
124	GO:0009651: response to salt stress	4.42E-02
125	GO:0006886: intracellular protein transport	4.60E-02
126	GO:0000154: rRNA modification	4.70E-02
127	GO:0009965: leaf morphogenesis	4.70E-02
128	GO:0006260: DNA replication	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0004164: diphthine synthase activity	0.00E+00
2	GO:0050220: prostaglandin-E synthase activity	0.00E+00
3	GO:0015930: glutamate synthase activity	0.00E+00
4	GO:0098808: mRNA cap binding	0.00E+00
5	GO:0001072: transcription antitermination factor activity, RNA binding	0.00E+00
6	GO:0052822: DNA-3-methylguanine glycosylase activity	0.00E+00
7	GO:0043916: DNA-7-methylguanine glycosylase activity	0.00E+00
8	GO:0052821: DNA-7-methyladenine glycosylase activity	0.00E+00
9	GO:0015370: solute:sodium symporter activity	0.00E+00
10	GO:0003905: alkylbase DNA N-glycosylase activity	0.00E+00
11	GO:0000166: nucleotide binding	5.46E-09
12	GO:0004815: aspartate-tRNA ligase activity	1.98E-04
13	GO:0070008: serine-type exopeptidase activity	1.98E-04
14	GO:0016041: glutamate synthase (ferredoxin) activity	1.98E-04
15	GO:0001054: RNA polymerase I activity	3.97E-04
16	GO:0035241: protein-arginine omega-N monomethyltransferase activity	4.43E-04
17	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	4.43E-04
18	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	4.43E-04
19	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	4.43E-04
20	GO:0019781: NEDD8 activating enzyme activity	4.43E-04
21	GO:0004617: phosphoglycerate dehydrogenase activity	4.43E-04
22	GO:0043021: ribonucleoprotein complex binding	4.43E-04
23	GO:0003938: IMP dehydrogenase activity	4.43E-04
24	GO:0008430: selenium binding	7.22E-04
25	GO:0004557: alpha-galactosidase activity	7.22E-04
26	GO:0004816: asparagine-tRNA ligase activity	7.22E-04
27	GO:0004781: sulfate adenylyltransferase (ATP) activity	7.22E-04
28	GO:0052692: raffinose alpha-galactosidase activity	7.22E-04
29	GO:0008469: histone-arginine N-methyltransferase activity	7.22E-04
30	GO:0080054: low-affinity nitrate transmembrane transporter activity	7.22E-04
31	GO:0015293: symporter activity	8.82E-04
32	GO:0031176: endo-1,4-beta-xylanase activity	1.03E-03
33	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.10E-03
34	GO:0047134: protein-disulfide reductase activity	1.34E-03
35	GO:0015204: urea transmembrane transporter activity	1.37E-03
36	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.37E-03
37	GO:0004791: thioredoxin-disulfide reductase activity	1.67E-03
38	GO:0008641: small protein activating enzyme activity	1.74E-03
39	GO:0004040: amidase activity	1.74E-03
40	GO:0051538: 3 iron, 4 sulfur cluster binding	1.74E-03
41	GO:0008725: DNA-3-methyladenine glycosylase activity	1.74E-03
42	GO:0015035: protein disulfide oxidoreductase activity	1.78E-03
43	GO:0031593: polyubiquitin binding	2.14E-03
44	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.14E-03
45	GO:0102391: decanoate--CoA ligase activity	2.57E-03
46	GO:0003978: UDP-glucose 4-epimerase activity	2.57E-03
47	GO:0004602: glutathione peroxidase activity	2.57E-03
48	GO:0004656: procollagen-proline 4-dioxygenase activity	2.57E-03
49	GO:0003872: 6-phosphofructokinase activity	3.03E-03
50	GO:0030515: snoRNA binding	3.03E-03
51	GO:0008320: protein transmembrane transporter activity	3.03E-03
52	GO:0043295: glutathione binding	3.03E-03
53	GO:0004467: long-chain fatty acid-CoA ligase activity	3.03E-03
54	GO:0005507: copper ion binding	3.04E-03
55	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.07E-03
56	GO:0005524: ATP binding	3.10E-03
57	GO:0004721: phosphoprotein phosphatase activity	3.24E-03
58	GO:0004683: calmodulin-dependent protein kinase activity	3.24E-03
59	GO:0005516: calmodulin binding	3.35E-03
60	GO:0003729: mRNA binding	3.41E-03
61	GO:0017056: structural constituent of nuclear pore	3.51E-03
62	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.59E-03
63	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.02E-03
64	GO:0008135: translation factor activity, RNA binding	4.02E-03
65	GO:0003678: DNA helicase activity	4.54E-03
66	GO:0003697: single-stranded DNA binding	4.54E-03
67	GO:0005487: nucleocytoplasmic transporter activity	5.10E-03
68	GO:0016844: strictosidine synthase activity	5.10E-03
69	GO:0015112: nitrate transmembrane transporter activity	5.10E-03
70	GO:0008794: arsenate reductase (glutaredoxin) activity	6.27E-03
71	GO:0008378: galactosyltransferase activity	6.89E-03
72	GO:0000175: 3'-5'-exoribonuclease activity	7.52E-03
73	GO:0004175: endopeptidase activity	8.19E-03
74	GO:0004535: poly(A)-specific ribonuclease activity	8.19E-03
75	GO:0030553: cGMP binding	8.87E-03
76	GO:0003712: transcription cofactor activity	8.87E-03
77	GO:0030552: cAMP binding	8.87E-03
78	GO:0004407: histone deacetylase activity	1.03E-02
79	GO:0005528: FK506 binding	1.03E-02
80	GO:0031418: L-ascorbic acid binding	1.03E-02
81	GO:0005216: ion channel activity	1.10E-02
82	GO:0016746: transferase activity, transferring acyl groups	1.16E-02
83	GO:0004540: ribonuclease activity	1.18E-02
84	GO:0008408: 3'-5' exonuclease activity	1.18E-02
85	GO:0008026: ATP-dependent helicase activity	1.19E-02
86	GO:0003727: single-stranded RNA binding	1.42E-02
87	GO:0030551: cyclic nucleotide binding	1.59E-02
88	GO:0005249: voltage-gated potassium channel activity	1.59E-02
89	GO:0004527: exonuclease activity	1.67E-02
90	GO:0004197: cysteine-type endopeptidase activity	2.04E-02
91	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.13E-02
92	GO:0016791: phosphatase activity	2.23E-02
93	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.33E-02
94	GO:0016597: amino acid binding	2.42E-02
95	GO:0008168: methyltransferase activity	2.91E-02
96	GO:0008236: serine-type peptidase activity	2.94E-02
97	GO:0005515: protein binding	3.17E-02
98	GO:0004222: metalloendopeptidase activity	3.27E-02
99	GO:0030145: manganese ion binding	3.38E-02
100	GO:0003723: RNA binding	3.44E-02
101	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.61E-02
102	GO:0003746: translation elongation factor activity	3.61E-02
103	GO:0050661: NADP binding	3.96E-02
104	GO:0004364: glutathione transferase activity	4.20E-02
105	GO:0043621: protein self-association	4.57E-02
106	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.82E-02
107	GO:0004722: protein serine/threonine phosphatase activity	4.89E-02
108	GO:0005525: GTP binding	4.91E-02
109	GO:0051287: NAD binding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0034455: t-UTP complex	0.00E+00
3	GO:0005829: cytosol	1.12E-07
4	GO:0030014: CCR4-NOT complex	1.98E-04
5	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.33E-04
6	GO:0005736: DNA-directed RNA polymerase I complex	2.45E-04
7	GO:0070545: PeBoW complex	4.43E-04
8	GO:0005783: endoplasmic reticulum	6.21E-04
9	GO:0030139: endocytic vesicle	7.22E-04
10	GO:0031080: nuclear pore outer ring	7.22E-04
11	GO:0030658: transport vesicle membrane	1.03E-03
12	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.24E-03
13	GO:0005945: 6-phosphofructokinase complex	1.74E-03
14	GO:0016282: eukaryotic 43S preinitiation complex	2.14E-03
15	GO:0031428: box C/D snoRNP complex	2.14E-03
16	GO:0005743: mitochondrial inner membrane	2.53E-03
17	GO:0033290: eukaryotic 48S preinitiation complex	2.57E-03
18	GO:0016272: prefoldin complex	2.57E-03
19	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.03E-03
20	GO:0030687: preribosome, large subunit precursor	3.03E-03
21	GO:0005742: mitochondrial outer membrane translocase complex	4.02E-03
22	GO:0005730: nucleolus	4.39E-03
23	GO:0031902: late endosome membrane	5.39E-03
24	GO:0017119: Golgi transport complex	5.67E-03
25	GO:0032040: small-subunit processome	6.89E-03
26	GO:0005886: plasma membrane	7.54E-03
27	GO:0005764: lysosome	8.19E-03
28	GO:0030176: integral component of endoplasmic reticulum membrane	8.87E-03
29	GO:0005834: heterotrimeric G-protein complex	9.94E-03
30	GO:0005758: mitochondrial intermembrane space	1.03E-02
31	GO:0015935: small ribosomal subunit	1.18E-02
32	GO:0005741: mitochondrial outer membrane	1.18E-02
33	GO:0005789: endoplasmic reticulum membrane	1.18E-02
34	GO:0000790: nuclear chromatin	1.50E-02
35	GO:0005768: endosome	1.67E-02
36	GO:0005887: integral component of plasma membrane	1.90E-02
37	GO:0016592: mediator complex	2.04E-02
38	GO:0005794: Golgi apparatus	2.08E-02
39	GO:0032580: Golgi cisterna membrane	2.23E-02
40	GO:0030529: intracellular ribonucleoprotein complex	2.53E-02
41	GO:0000932: P-body	2.53E-02
42	GO:0005773: vacuole	3.90E-02
43	GO:0005737: cytoplasm	4.08E-02
44	GO:0016021: integral component of membrane	4.25E-02
45	GO:0005802: trans-Golgi network	4.75E-02