GO Enrichment Analysis of Co-expressed Genes with
AT3G22210
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 3 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 4 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 5 | GO:0009773: photosynthetic electron transport in photosystem I | 8.33E-07 |
| 6 | GO:0006810: transport | 1.23E-06 |
| 7 | GO:0006546: glycine catabolic process | 3.86E-06 |
| 8 | GO:0019464: glycine decarboxylation via glycine cleavage system | 3.86E-06 |
| 9 | GO:0009443: pyridoxal 5'-phosphate salvage | 6.10E-05 |
| 10 | GO:0009853: photorespiration | 6.10E-05 |
| 11 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 6.10E-05 |
| 12 | GO:0006438: valyl-tRNA aminoacylation | 6.10E-05 |
| 13 | GO:0019684: photosynthesis, light reaction | 7.32E-05 |
| 14 | GO:0009767: photosynthetic electron transport chain | 9.94E-05 |
| 15 | GO:0019253: reductive pentose-phosphate cycle | 1.14E-04 |
| 16 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.48E-04 |
| 17 | GO:0061077: chaperone-mediated protein folding | 2.01E-04 |
| 18 | GO:0006730: one-carbon metabolic process | 2.21E-04 |
| 19 | GO:2001295: malonyl-CoA biosynthetic process | 2.51E-04 |
| 20 | GO:0006000: fructose metabolic process | 2.51E-04 |
| 21 | GO:0016117: carotenoid biosynthetic process | 2.87E-04 |
| 22 | GO:2001141: regulation of RNA biosynthetic process | 3.65E-04 |
| 23 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.65E-04 |
| 24 | GO:2000122: negative regulation of stomatal complex development | 4.88E-04 |
| 25 | GO:0009902: chloroplast relocation | 4.88E-04 |
| 26 | GO:0010037: response to carbon dioxide | 4.88E-04 |
| 27 | GO:0015976: carbon utilization | 4.88E-04 |
| 28 | GO:0009735: response to cytokinin | 5.18E-04 |
| 29 | GO:0010236: plastoquinone biosynthetic process | 6.19E-04 |
| 30 | GO:1902183: regulation of shoot apical meristem development | 6.19E-04 |
| 31 | GO:0016123: xanthophyll biosynthetic process | 6.19E-04 |
| 32 | GO:0010190: cytochrome b6f complex assembly | 7.57E-04 |
| 33 | GO:0032973: amino acid export | 7.57E-04 |
| 34 | GO:0009854: oxidative photosynthetic carbon pathway | 9.01E-04 |
| 35 | GO:0043090: amino acid import | 1.05E-03 |
| 36 | GO:0015979: photosynthesis | 1.22E-03 |
| 37 | GO:0006002: fructose 6-phosphate metabolic process | 1.38E-03 |
| 38 | GO:0071482: cellular response to light stimulus | 1.38E-03 |
| 39 | GO:0006075: (1->3)-beta-D-glucan biosynthetic process | 1.38E-03 |
| 40 | GO:0009793: embryo development ending in seed dormancy | 1.43E-03 |
| 41 | GO:0010206: photosystem II repair | 1.55E-03 |
| 42 | GO:0080144: amino acid homeostasis | 1.55E-03 |
| 43 | GO:2000024: regulation of leaf development | 1.55E-03 |
| 44 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 1.92E-03 |
| 45 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.12E-03 |
| 46 | GO:0006352: DNA-templated transcription, initiation | 2.12E-03 |
| 47 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.12E-03 |
| 48 | GO:0045037: protein import into chloroplast stroma | 2.32E-03 |
| 49 | GO:0006094: gluconeogenesis | 2.52E-03 |
| 50 | GO:0005986: sucrose biosynthetic process | 2.52E-03 |
| 51 | GO:0090351: seedling development | 2.96E-03 |
| 52 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.18E-03 |
| 53 | GO:0009944: polarity specification of adaxial/abaxial axis | 3.42E-03 |
| 54 | GO:0006633: fatty acid biosynthetic process | 3.58E-03 |
| 55 | GO:0006418: tRNA aminoacylation for protein translation | 3.65E-03 |
| 56 | GO:0008360: regulation of cell shape | 5.46E-03 |
| 57 | GO:0019252: starch biosynthetic process | 6.03E-03 |
| 58 | GO:0009658: chloroplast organization | 6.06E-03 |
| 59 | GO:0009817: defense response to fungus, incompatible interaction | 9.82E-03 |
| 60 | GO:0010119: regulation of stomatal movement | 1.09E-02 |
| 61 | GO:0016051: carbohydrate biosynthetic process | 1.16E-02 |
| 62 | GO:0009409: response to cold | 1.25E-02 |
| 63 | GO:0009744: response to sucrose | 1.39E-02 |
| 64 | GO:0046686: response to cadmium ion | 1.50E-02 |
| 65 | GO:0006813: potassium ion transport | 1.71E-02 |
| 66 | GO:0006096: glycolytic process | 1.93E-02 |
| 67 | GO:0006412: translation | 2.07E-02 |
| 68 | GO:0009790: embryo development | 2.88E-02 |
| 69 | GO:0006413: translational initiation | 3.09E-02 |
| 70 | GO:0042254: ribosome biogenesis | 4.49E-02 |
| 71 | GO:0048366: leaf development | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 3 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 4 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 5 | GO:0005528: FK506 binding | 2.83E-08 |
| 6 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 2.16E-07 |
| 7 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 2.00E-06 |
| 8 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.32E-06 |
| 9 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.44E-05 |
| 10 | GO:0004832: valine-tRNA ligase activity | 6.10E-05 |
| 11 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 1.48E-04 |
| 12 | GO:0010291: carotene beta-ring hydroxylase activity | 1.48E-04 |
| 13 | GO:0042389: omega-3 fatty acid desaturase activity | 1.48E-04 |
| 14 | GO:0004618: phosphoglycerate kinase activity | 1.48E-04 |
| 15 | GO:0004047: aminomethyltransferase activity | 1.48E-04 |
| 16 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.48E-04 |
| 17 | GO:0004075: biotin carboxylase activity | 2.51E-04 |
| 18 | GO:0030267: glyoxylate reductase (NADP) activity | 2.51E-04 |
| 19 | GO:0070402: NADPH binding | 2.51E-04 |
| 20 | GO:0005509: calcium ion binding | 2.80E-04 |
| 21 | GO:0019843: rRNA binding | 3.05E-04 |
| 22 | GO:0001053: plastid sigma factor activity | 4.88E-04 |
| 23 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 4.88E-04 |
| 24 | GO:0016987: sigma factor activity | 4.88E-04 |
| 25 | GO:0003989: acetyl-CoA carboxylase activity | 6.19E-04 |
| 26 | GO:0042578: phosphoric ester hydrolase activity | 7.57E-04 |
| 27 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 9.01E-04 |
| 28 | GO:0004033: aldo-keto reductase (NADP) activity | 1.21E-03 |
| 29 | GO:0003843: 1,3-beta-D-glucan synthase activity | 1.38E-03 |
| 30 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 1.38E-03 |
| 31 | GO:0004089: carbonate dehydratase activity | 2.52E-03 |
| 32 | GO:0008324: cation transmembrane transporter activity | 3.65E-03 |
| 33 | GO:0003735: structural constituent of ribosome | 4.84E-03 |
| 34 | GO:0004812: aminoacyl-tRNA ligase activity | 4.92E-03 |
| 35 | GO:0003713: transcription coactivator activity | 5.46E-03 |
| 36 | GO:0048038: quinone binding | 6.32E-03 |
| 37 | GO:0008483: transaminase activity | 7.52E-03 |
| 38 | GO:0016597: amino acid binding | 7.84E-03 |
| 39 | GO:0008236: serine-type peptidase activity | 9.47E-03 |
| 40 | GO:0003746: translation elongation factor activity | 1.16E-02 |
| 41 | GO:0003729: mRNA binding | 1.41E-02 |
| 42 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.47E-02 |
| 43 | GO:0005198: structural molecule activity | 1.51E-02 |
| 44 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.71E-02 |
| 45 | GO:0015171: amino acid transmembrane transporter activity | 1.84E-02 |
| 46 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.63E-02 |
| 47 | GO:0004252: serine-type endopeptidase activity | 2.78E-02 |
| 48 | GO:0019825: oxygen binding | 2.82E-02 |
| 49 | GO:0008565: protein transporter activity | 2.94E-02 |
| 50 | GO:0003743: translation initiation factor activity | 3.63E-02 |
| 51 | GO:0003824: catalytic activity | 4.38E-02 |
| 52 | GO:0043531: ADP binding | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009344: nitrite reductase complex [NAD(P)H] | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.16E-37 |
| 3 | GO:0009941: chloroplast envelope | 3.93E-20 |
| 4 | GO:0009543: chloroplast thylakoid lumen | 1.51E-19 |
| 5 | GO:0009570: chloroplast stroma | 4.37E-16 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 1.71E-14 |
| 7 | GO:0009579: thylakoid | 6.41E-14 |
| 8 | GO:0009654: photosystem II oxygen evolving complex | 2.48E-10 |
| 9 | GO:0031977: thylakoid lumen | 7.59E-10 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.46E-09 |
| 11 | GO:0019898: extrinsic component of membrane | 2.15E-09 |
| 12 | GO:0030095: chloroplast photosystem II | 1.27E-08 |
| 13 | GO:0005960: glycine cleavage complex | 2.00E-06 |
| 14 | GO:0009534: chloroplast thylakoid | 1.13E-05 |
| 15 | GO:0042170: plastid membrane | 1.48E-04 |
| 16 | GO:0010319: stromule | 5.29E-04 |
| 17 | GO:0000148: 1,3-beta-D-glucan synthase complex | 1.38E-03 |
| 18 | GO:0009706: chloroplast inner membrane | 2.29E-03 |
| 19 | GO:0000311: plastid large ribosomal subunit | 2.32E-03 |
| 20 | GO:0005623: cell | 2.94E-03 |
| 21 | GO:0005759: mitochondrial matrix | 3.58E-03 |
| 22 | GO:0031969: chloroplast membrane | 7.51E-03 |
| 23 | GO:0005840: ribosome | 9.04E-03 |
| 24 | GO:0009707: chloroplast outer membrane | 9.82E-03 |
| 25 | GO:0015934: large ribosomal subunit | 1.09E-02 |
| 26 | GO:0010287: plastoglobule | 2.49E-02 |
| 27 | GO:0048046: apoplast | 4.31E-02 |