co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G21640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0039694: viral RNA genome replication	0.00E+00
2	GO:0031564: transcription antitermination	0.00E+00
3	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
4	GO:0002376: immune system process	0.00E+00
5	GO:0043419: urea catabolic process	0.00E+00
6	GO:0072722: response to amitrole	0.00E+00
7	GO:2000072: regulation of defense response to fungus, incompatible interaction	1.48E-06
8	GO:0001676: long-chain fatty acid metabolic process	1.27E-05
9	GO:0009790: embryo development	3.72E-05
10	GO:0045454: cell redox homeostasis	4.10E-05
11	GO:0042742: defense response to bacterium	5.37E-05
12	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	7.89E-05
13	GO:0000302: response to reactive oxygen species	1.37E-04
14	GO:0009880: embryonic pattern specification	1.69E-04
15	GO:0006177: GMP biosynthetic process	1.75E-04
16	GO:0043547: positive regulation of GTPase activity	1.75E-04
17	GO:0006422: aspartyl-tRNA aminoacylation	1.75E-04
18	GO:1990022: RNA polymerase III complex localization to nucleus	1.75E-04
19	GO:0033306: phytol metabolic process	1.75E-04
20	GO:0044376: RNA polymerase II complex import to nucleus	1.75E-04
21	GO:0009968: negative regulation of signal transduction	1.75E-04
22	GO:0090421: embryonic meristem initiation	1.75E-04
23	GO:0030010: establishment of cell polarity	3.96E-04
24	GO:0031349: positive regulation of defense response	3.96E-04
25	GO:1902000: homogentisate catabolic process	3.96E-04
26	GO:0008535: respiratory chain complex IV assembly	3.96E-04
27	GO:0006996: organelle organization	3.96E-04
28	GO:0002221: pattern recognition receptor signaling pathway	3.96E-04
29	GO:0015914: phospholipid transport	3.96E-04
30	GO:0045087: innate immune response	4.48E-04
31	GO:0010150: leaf senescence	4.52E-04
32	GO:0070588: calcium ion transmembrane transport	5.54E-04
33	GO:0034976: response to endoplasmic reticulum stress	6.18E-04
34	GO:0009410: response to xenobiotic stimulus	6.47E-04
35	GO:0010272: response to silver ion	6.47E-04
36	GO:0009072: aromatic amino acid family metabolic process	6.47E-04
37	GO:0048281: inflorescence morphogenesis	6.47E-04
38	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	6.47E-04
39	GO:0009814: defense response, incompatible interaction	8.98E-04
40	GO:0048194: Golgi vesicle budding	9.23E-04
41	GO:0033617: mitochondrial respiratory chain complex IV assembly	9.23E-04
42	GO:0009735: response to cytokinin	1.04E-03
43	GO:0009414: response to water deprivation	1.06E-03
44	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	1.22E-03
45	GO:0080142: regulation of salicylic acid biosynthetic process	1.22E-03
46	GO:0009651: response to salt stress	1.33E-03
47	GO:0009737: response to abscisic acid	1.51E-03
48	GO:0009749: response to glucose	1.52E-03
49	GO:0045116: protein neddylation	1.56E-03
50	GO:0010193: response to ozone	1.63E-03
51	GO:0015031: protein transport	1.78E-03
52	GO:0030163: protein catabolic process	1.85E-03
53	GO:0045040: protein import into mitochondrial outer membrane	1.91E-03
54	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.91E-03
55	GO:0010405: arabinogalactan protein metabolic process	1.91E-03
56	GO:0009409: response to cold	2.02E-03
57	GO:2000067: regulation of root morphogenesis	2.30E-03
58	GO:0000911: cytokinesis by cell plate formation	2.30E-03
59	GO:0009612: response to mechanical stimulus	2.30E-03
60	GO:0006694: steroid biosynthetic process	2.30E-03
61	GO:0010555: response to mannitol	2.30E-03
62	GO:0009615: response to virus	2.34E-03
63	GO:0043090: amino acid import	2.70E-03
64	GO:1900056: negative regulation of leaf senescence	2.70E-03
65	GO:0070370: cellular heat acclimation	2.70E-03
66	GO:0006400: tRNA modification	2.70E-03
67	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.13E-03
68	GO:0009819: drought recovery	3.13E-03
69	GO:0009407: toxin catabolic process	3.35E-03
70	GO:0009617: response to bacterium	3.47E-03
71	GO:0010043: response to zinc ion	3.51E-03
72	GO:0007186: G-protein coupled receptor signaling pathway	3.58E-03
73	GO:0030968: endoplasmic reticulum unfolded protein response	3.58E-03
74	GO:0043562: cellular response to nitrogen levels	3.58E-03
75	GO:0009734: auxin-activated signaling pathway	3.68E-03
76	GO:0046685: response to arsenic-containing substance	4.05E-03
77	GO:0009821: alkaloid biosynthetic process	4.05E-03
78	GO:0019432: triglyceride biosynthetic process	4.05E-03
79	GO:0001708: cell fate specification	4.05E-03
80	GO:0006952: defense response	4.41E-03
81	GO:0043067: regulation of programmed cell death	4.54E-03
82	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.54E-03
83	GO:0042761: very long-chain fatty acid biosynthetic process	4.54E-03
84	GO:0006631: fatty acid metabolic process	4.56E-03
85	GO:0006896: Golgi to vacuole transport	5.05E-03
86	GO:0000103: sulfate assimilation	5.05E-03
87	GO:0006032: chitin catabolic process	5.05E-03
88	GO:0006970: response to osmotic stress	5.30E-03
89	GO:0072593: reactive oxygen species metabolic process	5.58E-03
90	GO:0000272: polysaccharide catabolic process	5.58E-03
91	GO:0009750: response to fructose	5.58E-03
92	GO:0030148: sphingolipid biosynthetic process	5.58E-03
93	GO:0000266: mitochondrial fission	6.13E-03
94	GO:0015706: nitrate transport	6.13E-03
95	GO:0010105: negative regulation of ethylene-activated signaling pathway	6.13E-03
96	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	6.13E-03
97	GO:0071365: cellular response to auxin stimulus	6.13E-03
98	GO:0006807: nitrogen compound metabolic process	6.70E-03
99	GO:0006626: protein targeting to mitochondrion	6.70E-03
100	GO:0034605: cellular response to heat	7.28E-03
101	GO:0002237: response to molecule of bacterial origin	7.28E-03
102	GO:0007034: vacuolar transport	7.28E-03
103	GO:0042343: indole glucosinolate metabolic process	7.89E-03
104	GO:0010167: response to nitrate	7.89E-03
105	GO:0006511: ubiquitin-dependent protein catabolic process	8.32E-03
106	GO:0046686: response to cadmium ion	9.08E-03
107	GO:0000027: ribosomal large subunit assembly	9.15E-03
108	GO:0009863: salicylic acid mediated signaling pathway	9.15E-03
109	GO:0030150: protein import into mitochondrial matrix	9.15E-03
110	GO:0010187: negative regulation of seed germination	9.15E-03
111	GO:2000377: regulation of reactive oxygen species metabolic process	9.15E-03
112	GO:0098542: defense response to other organism	1.05E-02
113	GO:0061077: chaperone-mediated protein folding	1.05E-02
114	GO:0016998: cell wall macromolecule catabolic process	1.05E-02
115	GO:0007131: reciprocal meiotic recombination	1.12E-02
116	GO:0009625: response to insect	1.19E-02
117	GO:0042127: regulation of cell proliferation	1.26E-02
118	GO:0042147: retrograde transport, endosome to Golgi	1.33E-02
119	GO:0042631: cellular response to water deprivation	1.41E-02
120	GO:0042391: regulation of membrane potential	1.41E-02
121	GO:0008033: tRNA processing	1.41E-02
122	GO:0010501: RNA secondary structure unwinding	1.41E-02
123	GO:0006662: glycerol ether metabolic process	1.49E-02
124	GO:0010182: sugar mediated signaling pathway	1.49E-02
125	GO:0009646: response to absence of light	1.56E-02
126	GO:0061025: membrane fusion	1.56E-02
127	GO:0006623: protein targeting to vacuole	1.64E-02
128	GO:0006891: intra-Golgi vesicle-mediated transport	1.72E-02
129	GO:0010252: auxin homeostasis	1.98E-02
130	GO:0009607: response to biotic stimulus	2.33E-02
131	GO:0009816: defense response to bacterium, incompatible interaction	2.33E-02
132	GO:0006468: protein phosphorylation	2.39E-02
133	GO:0009627: systemic acquired resistance	2.42E-02
134	GO:0042128: nitrate assimilation	2.42E-02
135	GO:0009826: unidimensional cell growth	2.46E-02
136	GO:0008219: cell death	2.71E-02
137	GO:0050832: defense response to fungus	2.74E-02
138	GO:0006499: N-terminal protein myristoylation	2.90E-02
139	GO:0009723: response to ethylene	2.95E-02
140	GO:0048527: lateral root development	3.00E-02
141	GO:0009631: cold acclimation	3.00E-02
142	GO:0006865: amino acid transport	3.10E-02
143	GO:0080167: response to karrikin	3.16E-02
144	GO:0009867: jasmonic acid mediated signaling pathway	3.20E-02
145	GO:0010200: response to chitin	3.27E-02
146	GO:0034599: cellular response to oxidative stress	3.31E-02
147	GO:0016192: vesicle-mediated transport	3.33E-02
148	GO:0046777: protein autophosphorylation	3.38E-02
149	GO:0042542: response to hydrogen peroxide	3.73E-02
150	GO:0051707: response to other organism	3.84E-02
151	GO:0009744: response to sucrose	3.84E-02
152	GO:0006886: intracellular protein transport	3.90E-02
153	GO:0000154: rRNA modification	4.17E-02
154	GO:0009965: leaf morphogenesis	4.17E-02
155	GO:0031347: regulation of defense response	4.39E-02
156	GO:0009751: response to salicylic acid	4.58E-02
157	GO:0006486: protein glycosylation	4.74E-02
158	GO:0009736: cytokinin-activated signaling pathway	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0050220: prostaglandin-E synthase activity	0.00E+00
2	GO:0009039: urease activity	0.00E+00
3	GO:0001072: transcription antitermination factor activity, RNA binding	0.00E+00
4	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
5	GO:0102391: decanoate--CoA ligase activity	7.89E-05
6	GO:0004467: long-chain fatty acid-CoA ligase activity	1.05E-04
7	GO:0005524: ATP binding	1.48E-04
8	GO:0015085: calcium ion transmembrane transporter activity	1.75E-04
9	GO:0004815: aspartate-tRNA ligase activity	1.75E-04
10	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	1.75E-04
11	GO:0019781: NEDD8 activating enzyme activity	3.96E-04
12	GO:0003938: IMP dehydrogenase activity	3.96E-04
13	GO:0038199: ethylene receptor activity	3.96E-04
14	GO:0045140: inositol phosphoceramide synthase activity	3.96E-04
15	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	3.96E-04
16	GO:0005388: calcium-transporting ATPase activity	4.39E-04
17	GO:0003924: GTPase activity	4.44E-04
18	GO:0005516: calmodulin binding	6.20E-04
19	GO:0001664: G-protein coupled receptor binding	6.47E-04
20	GO:0016151: nickel cation binding	6.47E-04
21	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	6.47E-04
22	GO:0004148: dihydrolipoyl dehydrogenase activity	6.47E-04
23	GO:0004557: alpha-galactosidase activity	6.47E-04
24	GO:0031683: G-protein beta/gamma-subunit complex binding	6.47E-04
25	GO:0052692: raffinose alpha-galactosidase activity	6.47E-04
26	GO:0051740: ethylene binding	9.23E-04
27	GO:0031176: endo-1,4-beta-xylanase activity	9.23E-04
28	GO:0003756: protein disulfide isomerase activity	1.06E-03
29	GO:0000166: nucleotide binding	1.21E-03
30	GO:0004930: G-protein coupled receptor activity	1.22E-03
31	GO:0005515: protein binding	1.33E-03
32	GO:0008641: small protein activating enzyme activity	1.56E-03
33	GO:0004040: amidase activity	1.56E-03
34	GO:0030976: thiamine pyrophosphate binding	1.91E-03
35	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.91E-03
36	GO:0031593: polyubiquitin binding	1.91E-03
37	GO:0004012: phospholipid-translocating ATPase activity	2.30E-03
38	GO:0004602: glutathione peroxidase activity	2.30E-03
39	GO:0004144: diacylglycerol O-acyltransferase activity	2.30E-03
40	GO:0030515: snoRNA binding	2.70E-03
41	GO:0008320: protein transmembrane transporter activity	2.70E-03
42	GO:0043295: glutathione binding	2.70E-03
43	GO:0004683: calmodulin-dependent protein kinase activity	2.75E-03
44	GO:0050897: cobalt ion binding	3.51E-03
45	GO:0003697: single-stranded DNA binding	3.84E-03
46	GO:0003678: DNA helicase activity	4.05E-03
47	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.20E-03
48	GO:0016844: strictosidine synthase activity	4.54E-03
49	GO:0015112: nitrate transmembrane transporter activity	4.54E-03
50	GO:0004364: glutathione transferase activity	4.75E-03
51	GO:0004568: chitinase activity	5.05E-03
52	GO:0004713: protein tyrosine kinase activity	5.05E-03
53	GO:0004673: protein histidine kinase activity	5.05E-03
54	GO:0001054: RNA polymerase I activity	5.58E-03
55	GO:0008559: xenobiotic-transporting ATPase activity	5.58E-03
56	GO:0008378: galactosyltransferase activity	6.13E-03
57	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6.70E-03
58	GO:0000155: phosphorelay sensor kinase activity	6.70E-03
59	GO:0030552: cAMP binding	7.89E-03
60	GO:0030553: cGMP binding	7.89E-03
61	GO:0008061: chitin binding	7.89E-03
62	GO:0003712: transcription cofactor activity	7.89E-03
63	GO:0004190: aspartic-type endopeptidase activity	7.89E-03
64	GO:0004672: protein kinase activity	8.20E-03
65	GO:0005507: copper ion binding	8.94E-03
66	GO:0005528: FK506 binding	9.15E-03
67	GO:0004674: protein serine/threonine kinase activity	9.28E-03
68	GO:0015035: protein disulfide oxidoreductase activity	9.78E-03
69	GO:0016746: transferase activity, transferring acyl groups	9.78E-03
70	GO:0005216: ion channel activity	9.80E-03
71	GO:0004298: threonine-type endopeptidase activity	1.05E-02
72	GO:0005525: GTP binding	1.11E-02
73	GO:0016301: kinase activity	1.13E-02
74	GO:0016758: transferase activity, transferring hexosyl groups	1.16E-02
75	GO:0047134: protein-disulfide reductase activity	1.33E-02
76	GO:0030551: cyclic nucleotide binding	1.41E-02
77	GO:0005249: voltage-gated potassium channel activity	1.41E-02
78	GO:0004791: thioredoxin-disulfide reductase activity	1.56E-02
79	GO:0010181: FMN binding	1.56E-02
80	GO:0004872: receptor activity	1.64E-02
81	GO:0008194: UDP-glycosyltransferase activity	1.84E-02
82	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.89E-02
83	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.42E-02
84	GO:0004721: phosphoprotein phosphatase activity	2.52E-02
85	GO:0004004: ATP-dependent RNA helicase activity	2.52E-02
86	GO:0004601: peroxidase activity	2.55E-02
87	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.71E-02
88	GO:0005096: GTPase activator activity	2.80E-02
89	GO:0051539: 4 iron, 4 sulfur cluster binding	3.52E-02
90	GO:0005484: SNAP receptor activity	3.84E-02
91	GO:0004871: signal transducer activity	3.96E-02
92	GO:0046872: metal ion binding	4.10E-02
93	GO:0015293: symporter activity	4.17E-02
94	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.28E-02
95	GO:0003676: nucleic acid binding	4.67E-02
96	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.74E-02
97	GO:0003690: double-stranded DNA binding	4.86E-02
98	GO:0016298: lipase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0019034: viral replication complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0005886: plasma membrane	8.80E-06
4	GO:0005783: endoplasmic reticulum	2.78E-05
5	GO:0005829: cytosol	4.64E-05
6	GO:0005901: caveola	3.96E-04
7	GO:0046861: glyoxysomal membrane	6.47E-04
8	GO:0030139: endocytic vesicle	6.47E-04
9	GO:0005789: endoplasmic reticulum membrane	7.32E-04
10	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.06E-03
11	GO:0005834: heterotrimeric G-protein complex	1.19E-03
12	GO:0009898: cytoplasmic side of plasma membrane	1.22E-03
13	GO:0031428: box C/D snoRNP complex	1.91E-03
14	GO:0005788: endoplasmic reticulum lumen	2.47E-03
15	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.70E-03
16	GO:0019005: SCF ubiquitin ligase complex	3.04E-03
17	GO:0005887: integral component of plasma membrane	3.48E-03
18	GO:0009514: glyoxysome	3.58E-03
19	GO:0019773: proteasome core complex, alpha-subunit complex	3.58E-03
20	GO:0005742: mitochondrial outer membrane translocase complex	3.58E-03
21	GO:0000326: protein storage vacuole	3.58E-03
22	GO:0005736: DNA-directed RNA polymerase I complex	4.05E-03
23	GO:0031902: late endosome membrane	4.56E-03
24	GO:0017119: Golgi transport complex	5.05E-03
25	GO:0032040: small-subunit processome	6.13E-03
26	GO:0000139: Golgi membrane	7.11E-03
27	GO:0043234: protein complex	8.51E-03
28	GO:0005743: mitochondrial inner membrane	9.49E-03
29	GO:0005839: proteasome core complex	1.05E-02
30	GO:0005741: mitochondrial outer membrane	1.05E-02
31	GO:0005802: trans-Golgi network	1.07E-02
32	GO:0005774: vacuolar membrane	1.27E-02
33	GO:0030136: clathrin-coated vesicle	1.33E-02
34	GO:0048046: apoplast	1.40E-02
35	GO:0009504: cell plate	1.64E-02
36	GO:0016021: integral component of membrane	1.77E-02
37	GO:0032580: Golgi cisterna membrane	1.98E-02
38	GO:0009505: plant-type cell wall	2.13E-02
39	GO:0030529: intracellular ribonucleoprotein complex	2.24E-02
40	GO:0000932: P-body	2.24E-02
41	GO:0009707: chloroplast outer membrane	2.71E-02
42	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.80E-02
43	GO:0000325: plant-type vacuole	3.00E-02
44	GO:0005874: microtubule	3.06E-02
45	GO:0005768: endosome	4.53E-02
46	GO:0000502: proteasome complex	4.74E-02