GO Enrichment Analysis of Co-expressed Genes with
AT3G21055
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 2 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 3 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0006412: translation | 1.70E-12 |
| 5 | GO:0042254: ribosome biogenesis | 1.85E-11 |
| 6 | GO:0015979: photosynthesis | 9.68E-11 |
| 7 | GO:0090391: granum assembly | 3.78E-09 |
| 8 | GO:0015995: chlorophyll biosynthetic process | 2.25E-07 |
| 9 | GO:0009735: response to cytokinin | 9.16E-07 |
| 10 | GO:0032544: plastid translation | 1.61E-06 |
| 11 | GO:0010206: photosystem II repair | 2.29E-06 |
| 12 | GO:0010027: thylakoid membrane organization | 5.93E-06 |
| 13 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 3.54E-05 |
| 14 | GO:0009772: photosynthetic electron transport in photosystem II | 7.02E-05 |
| 15 | GO:0010196: nonphotochemical quenching | 7.02E-05 |
| 16 | GO:0009828: plant-type cell wall loosening | 1.08E-04 |
| 17 | GO:0042759: long-chain fatty acid biosynthetic process | 1.35E-04 |
| 18 | GO:0042371: vitamin K biosynthetic process | 1.35E-04 |
| 19 | GO:0034337: RNA folding | 1.35E-04 |
| 20 | GO:0009773: photosynthetic electron transport in photosystem I | 2.34E-04 |
| 21 | GO:0010541: acropetal auxin transport | 3.11E-04 |
| 22 | GO:0010207: photosystem II assembly | 3.49E-04 |
| 23 | GO:0010160: formation of animal organ boundary | 5.13E-04 |
| 24 | GO:0009664: plant-type cell wall organization | 5.25E-04 |
| 25 | GO:0006986: response to unfolded protein | 7.34E-04 |
| 26 | GO:0051513: regulation of monopolar cell growth | 7.34E-04 |
| 27 | GO:0071484: cellular response to light intensity | 7.34E-04 |
| 28 | GO:0009102: biotin biosynthetic process | 7.34E-04 |
| 29 | GO:0051085: chaperone mediated protein folding requiring cofactor | 7.34E-04 |
| 30 | GO:0051639: actin filament network formation | 7.34E-04 |
| 31 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 7.34E-04 |
| 32 | GO:1901332: negative regulation of lateral root development | 7.34E-04 |
| 33 | GO:0048443: stamen development | 7.52E-04 |
| 34 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 9.73E-04 |
| 35 | GO:0051764: actin crosslink formation | 9.73E-04 |
| 36 | GO:0010236: plastoquinone biosynthetic process | 1.23E-03 |
| 37 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.51E-03 |
| 38 | GO:0060918: auxin transport | 1.51E-03 |
| 39 | GO:0017148: negative regulation of translation | 1.81E-03 |
| 40 | GO:1901259: chloroplast rRNA processing | 1.81E-03 |
| 41 | GO:0042372: phylloquinone biosynthetic process | 1.81E-03 |
| 42 | GO:0009627: systemic acquired resistance | 1.83E-03 |
| 43 | GO:0006605: protein targeting | 2.46E-03 |
| 44 | GO:0048564: photosystem I assembly | 2.46E-03 |
| 45 | GO:0008610: lipid biosynthetic process | 2.46E-03 |
| 46 | GO:0009826: unidimensional cell growth | 2.91E-03 |
| 47 | GO:0009658: chloroplast organization | 3.06E-03 |
| 48 | GO:0048589: developmental growth | 3.17E-03 |
| 49 | GO:0009245: lipid A biosynthetic process | 3.17E-03 |
| 50 | GO:0006535: cysteine biosynthetic process from serine | 3.95E-03 |
| 51 | GO:0006949: syncytium formation | 3.95E-03 |
| 52 | GO:0018119: peptidyl-cysteine S-nitrosylation | 4.36E-03 |
| 53 | GO:0008361: regulation of cell size | 4.79E-03 |
| 54 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.79E-03 |
| 55 | GO:0010152: pollen maturation | 4.79E-03 |
| 56 | GO:0006006: glucose metabolic process | 5.22E-03 |
| 57 | GO:0010540: basipetal auxin transport | 5.68E-03 |
| 58 | GO:0019253: reductive pentose-phosphate cycle | 5.68E-03 |
| 59 | GO:0010025: wax biosynthetic process | 6.62E-03 |
| 60 | GO:0051017: actin filament bundle assembly | 7.11E-03 |
| 61 | GO:0019344: cysteine biosynthetic process | 7.11E-03 |
| 62 | GO:0000027: ribosomal large subunit assembly | 7.11E-03 |
| 63 | GO:0030245: cellulose catabolic process | 8.67E-03 |
| 64 | GO:0009306: protein secretion | 9.77E-03 |
| 65 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.03E-02 |
| 66 | GO:0080022: primary root development | 1.09E-02 |
| 67 | GO:0000413: protein peptidyl-prolyl isomerization | 1.09E-02 |
| 68 | GO:0042335: cuticle development | 1.09E-02 |
| 69 | GO:0009958: positive gravitropism | 1.15E-02 |
| 70 | GO:0015986: ATP synthesis coupled proton transport | 1.21E-02 |
| 71 | GO:0009739: response to gibberellin | 1.28E-02 |
| 72 | GO:0000302: response to reactive oxygen species | 1.34E-02 |
| 73 | GO:0030163: protein catabolic process | 1.46E-02 |
| 74 | GO:0009567: double fertilization forming a zygote and endosperm | 1.53E-02 |
| 75 | GO:0009639: response to red or far red light | 1.53E-02 |
| 76 | GO:0006508: proteolysis | 1.56E-02 |
| 77 | GO:0016126: sterol biosynthetic process | 1.73E-02 |
| 78 | GO:0006457: protein folding | 1.89E-02 |
| 79 | GO:0010311: lateral root formation | 2.17E-02 |
| 80 | GO:0080167: response to karrikin | 2.21E-02 |
| 81 | GO:0010218: response to far red light | 2.24E-02 |
| 82 | GO:0007568: aging | 2.32E-02 |
| 83 | GO:0048527: lateral root development | 2.32E-02 |
| 84 | GO:0009637: response to blue light | 2.48E-02 |
| 85 | GO:0034599: cellular response to oxidative stress | 2.56E-02 |
| 86 | GO:0030001: metal ion transport | 2.72E-02 |
| 87 | GO:0010114: response to red light | 2.97E-02 |
| 88 | GO:0009926: auxin polar transport | 2.97E-02 |
| 89 | GO:0009640: photomorphogenesis | 2.97E-02 |
| 90 | GO:0032259: methylation | 3.12E-02 |
| 91 | GO:0008152: metabolic process | 3.59E-02 |
| 92 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.76E-02 |
| 93 | GO:0009733: response to auxin | 3.82E-02 |
| 94 | GO:0006096: glycolytic process | 4.13E-02 |
| 95 | GO:0009734: auxin-activated signaling pathway | 4.57E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 2 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 3 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 4 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 5 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 6 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 7 | GO:0003735: structural constituent of ribosome | 6.99E-15 |
| 8 | GO:0019843: rRNA binding | 3.40E-13 |
| 9 | GO:0016851: magnesium chelatase activity | 1.85E-08 |
| 10 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.16E-08 |
| 11 | GO:0005528: FK506 binding | 3.25E-07 |
| 12 | GO:0004163: diphosphomevalonate decarboxylase activity | 1.35E-04 |
| 13 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.35E-04 |
| 14 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.11E-04 |
| 15 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 5.13E-04 |
| 16 | GO:0043023: ribosomal large subunit binding | 7.34E-04 |
| 17 | GO:0008097: 5S rRNA binding | 7.34E-04 |
| 18 | GO:0001872: (1->3)-beta-D-glucan binding | 7.34E-04 |
| 19 | GO:0004659: prenyltransferase activity | 9.73E-04 |
| 20 | GO:0010011: auxin binding | 9.73E-04 |
| 21 | GO:0004040: amidase activity | 1.23E-03 |
| 22 | GO:0004252: serine-type endopeptidase activity | 1.34E-03 |
| 23 | GO:0004130: cytochrome-c peroxidase activity | 1.51E-03 |
| 24 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.51E-03 |
| 25 | GO:0031177: phosphopantetheine binding | 1.51E-03 |
| 26 | GO:0004124: cysteine synthase activity | 1.81E-03 |
| 27 | GO:0015631: tubulin binding | 1.81E-03 |
| 28 | GO:0000035: acyl binding | 1.81E-03 |
| 29 | GO:0008236: serine-type peptidase activity | 2.03E-03 |
| 30 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 2.46E-03 |
| 31 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.46E-03 |
| 32 | GO:0031072: heat shock protein binding | 5.22E-03 |
| 33 | GO:0010329: auxin efflux transmembrane transporter activity | 5.22E-03 |
| 34 | GO:0051082: unfolded protein binding | 6.62E-03 |
| 35 | GO:0051087: chaperone binding | 7.62E-03 |
| 36 | GO:0005509: calcium ion binding | 7.79E-03 |
| 37 | GO:0004707: MAP kinase activity | 8.14E-03 |
| 38 | GO:0030570: pectate lyase activity | 9.21E-03 |
| 39 | GO:0008810: cellulase activity | 9.21E-03 |
| 40 | GO:0003756: protein disulfide isomerase activity | 9.77E-03 |
| 41 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.15E-02 |
| 42 | GO:0051015: actin filament binding | 1.46E-02 |
| 43 | GO:0016168: chlorophyll binding | 1.80E-02 |
| 44 | GO:0030247: polysaccharide binding | 1.95E-02 |
| 45 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.09E-02 |
| 46 | GO:0050661: NADP binding | 2.72E-02 |
| 47 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.72E-02 |
| 48 | GO:0004185: serine-type carboxypeptidase activity | 2.97E-02 |
| 49 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.14E-02 |
| 50 | GO:0051287: NAD binding | 3.40E-02 |
| 51 | GO:0003777: microtubule motor activity | 3.95E-02 |
| 52 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.23E-02 |
| 53 | GO:0016491: oxidoreductase activity | 4.64E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0043224: nuclear SCF ubiquitin ligase complex | 0.00E+00 |
| 3 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 4 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 5 | GO:0009570: chloroplast stroma | 2.92E-36 |
| 6 | GO:0009507: chloroplast | 4.54E-30 |
| 7 | GO:0009534: chloroplast thylakoid | 3.75E-27 |
| 8 | GO:0009941: chloroplast envelope | 3.76E-26 |
| 9 | GO:0009579: thylakoid | 1.37E-25 |
| 10 | GO:0009535: chloroplast thylakoid membrane | 1.65E-23 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 2.20E-18 |
| 12 | GO:0005840: ribosome | 3.03E-17 |
| 13 | GO:0031977: thylakoid lumen | 2.07E-15 |
| 14 | GO:0010007: magnesium chelatase complex | 3.78E-09 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 4.12E-07 |
| 16 | GO:0019898: extrinsic component of membrane | 2.25E-06 |
| 17 | GO:0030095: chloroplast photosystem II | 1.09E-05 |
| 18 | GO:0016020: membrane | 6.40E-05 |
| 19 | GO:0009538: photosystem I reaction center | 9.09E-05 |
| 20 | GO:0009295: nucleoid | 1.18E-04 |
| 21 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.35E-04 |
| 22 | GO:0009508: plastid chromosome | 3.08E-04 |
| 23 | GO:0030093: chloroplast photosystem I | 3.11E-04 |
| 24 | GO:0009509: chromoplast | 5.13E-04 |
| 25 | GO:0032432: actin filament bundle | 7.34E-04 |
| 26 | GO:0005618: cell wall | 8.29E-04 |
| 27 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.51E-03 |
| 28 | GO:0009533: chloroplast stromal thylakoid | 2.12E-03 |
| 29 | GO:0009536: plastid | 3.17E-03 |
| 30 | GO:0042644: chloroplast nucleoid | 3.17E-03 |
| 31 | GO:0005884: actin filament | 4.36E-03 |
| 32 | GO:0000311: plastid large ribosomal subunit | 4.79E-03 |
| 33 | GO:0032040: small-subunit processome | 4.79E-03 |
| 34 | GO:0010287: plastoglobule | 7.85E-03 |
| 35 | GO:0015935: small ribosomal subunit | 8.14E-03 |
| 36 | GO:0009522: photosystem I | 1.21E-02 |
| 37 | GO:0010319: stromule | 1.60E-02 |
| 38 | GO:0048046: apoplast | 2.09E-02 |
| 39 | GO:0031969: chloroplast membrane | 2.21E-02 |
| 40 | GO:0022625: cytosolic large ribosomal subunit | 2.32E-02 |
| 41 | GO:0015934: large ribosomal subunit | 2.32E-02 |
| 42 | GO:0005576: extracellular region | 3.81E-02 |
| 43 | GO:0009706: chloroplast inner membrane | 4.71E-02 |