Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G18890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:1905421: regulation of plant organ morphogenesis0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0030155: regulation of cell adhesion0.00E+00
5GO:0045014: negative regulation of transcription by glucose0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
8GO:0090071: negative regulation of ribosome biogenesis0.00E+00
9GO:0016553: base conversion or substitution editing0.00E+00
10GO:1905499: trichome papilla formation0.00E+00
11GO:0006412: translation4.83E-14
12GO:0015979: photosynthesis7.67E-12
13GO:0042254: ribosome biogenesis2.00E-11
14GO:0015995: chlorophyll biosynthetic process1.41E-10
15GO:0032544: plastid translation1.30E-09
16GO:0009735: response to cytokinin9.54E-09
17GO:0090391: granum assembly3.35E-08
18GO:0010207: photosystem II assembly2.10E-06
19GO:0010027: thylakoid membrane organization3.32E-06
20GO:0010206: photosystem II repair1.73E-05
21GO:0009773: photosynthetic electron transport in photosystem I3.87E-05
22GO:0016024: CDP-diacylglycerol biosynthetic process4.85E-05
23GO:0006655: phosphatidylglycerol biosynthetic process1.43E-04
24GO:1901259: chloroplast rRNA processing1.95E-04
25GO:0009306: protein secretion2.30E-04
26GO:0009772: photosynthetic electron transport in photosystem II2.54E-04
27GO:0010196: nonphotochemical quenching2.54E-04
28GO:1902458: positive regulation of stomatal opening3.11E-04
29GO:0034337: RNA folding3.11E-04
30GO:0071588: hydrogen peroxide mediated signaling pathway3.11E-04
31GO:0060627: regulation of vesicle-mediated transport3.11E-04
32GO:0005980: glycogen catabolic process3.11E-04
33GO:0043489: RNA stabilization3.11E-04
34GO:1904966: positive regulation of vitamin E biosynthetic process3.11E-04
35GO:1904964: positive regulation of phytol biosynthetic process3.11E-04
36GO:0042759: long-chain fatty acid biosynthetic process3.11E-04
37GO:0042371: vitamin K biosynthetic process3.11E-04
38GO:0006779: porphyrin-containing compound biosynthetic process5.59E-04
39GO:0006782: protoporphyrinogen IX biosynthetic process6.53E-04
40GO:0009658: chloroplast organization6.66E-04
41GO:0006729: tetrahydrobiopterin biosynthetic process6.81E-04
42GO:1903426: regulation of reactive oxygen species biosynthetic process6.81E-04
43GO:0006568: tryptophan metabolic process6.81E-04
44GO:0010289: homogalacturonan biosynthetic process6.81E-04
45GO:0043255: regulation of carbohydrate biosynthetic process6.81E-04
46GO:1902326: positive regulation of chlorophyll biosynthetic process6.81E-04
47GO:0010541: acropetal auxin transport6.81E-04
48GO:0048281: inflorescence morphogenesis1.10E-03
49GO:0006518: peptide metabolic process1.10E-03
50GO:0010160: formation of animal organ boundary1.10E-03
51GO:0034599: cellular response to oxidative stress1.33E-03
52GO:0010025: wax biosynthetic process1.36E-03
53GO:0051017: actin filament bundle assembly1.50E-03
54GO:0051513: regulation of monopolar cell growth1.58E-03
55GO:0071484: cellular response to light intensity1.58E-03
56GO:0009102: biotin biosynthetic process1.58E-03
57GO:0051085: chaperone mediated protein folding requiring cofactor1.58E-03
58GO:0051639: actin filament network formation1.58E-03
59GO:0010239: chloroplast mRNA processing1.58E-03
60GO:0006241: CTP biosynthetic process1.58E-03
61GO:0043481: anthocyanin accumulation in tissues in response to UV light1.58E-03
62GO:0006165: nucleoside diphosphate phosphorylation1.58E-03
63GO:0006228: UTP biosynthetic process1.58E-03
64GO:0010148: transpiration1.58E-03
65GO:1901332: negative regulation of lateral root development1.58E-03
66GO:0006986: response to unfolded protein1.58E-03
67GO:2001141: regulation of RNA biosynthetic process1.58E-03
68GO:0016998: cell wall macromolecule catabolic process1.82E-03
69GO:0051764: actin crosslink formation2.12E-03
70GO:0006183: GTP biosynthetic process2.12E-03
71GO:0045727: positive regulation of translation2.12E-03
72GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.12E-03
73GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.17E-03
74GO:0009664: plant-type cell wall organization2.31E-03
75GO:0048443: stamen development2.36E-03
76GO:0006665: sphingolipid metabolic process2.71E-03
77GO:0010236: plastoquinone biosynthetic process2.71E-03
78GO:0045038: protein import into chloroplast thylakoid membrane2.71E-03
79GO:0042335: cuticle development2.76E-03
80GO:0000413: protein peptidyl-prolyl isomerization2.76E-03
81GO:0042549: photosystem II stabilization3.35E-03
82GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.35E-03
83GO:0060918: auxin transport3.35E-03
84GO:0010337: regulation of salicylic acid metabolic process3.35E-03
85GO:0000302: response to reactive oxygen species3.68E-03
86GO:0010019: chloroplast-nucleus signaling pathway4.03E-03
87GO:0042372: phylloquinone biosynthetic process4.03E-03
88GO:0009082: branched-chain amino acid biosynthetic process4.03E-03
89GO:0017148: negative regulation of translation4.03E-03
90GO:0009099: valine biosynthetic process4.03E-03
91GO:0009828: plant-type cell wall loosening4.45E-03
92GO:0010103: stomatal complex morphogenesis4.76E-03
93GO:0070370: cellular heat acclimation4.76E-03
94GO:0048564: photosystem I assembly5.53E-03
95GO:0008610: lipid biosynthetic process5.53E-03
96GO:0006353: DNA-templated transcription, termination5.53E-03
97GO:0006605: protein targeting5.53E-03
98GO:2000070: regulation of response to water deprivation5.53E-03
99GO:0010492: maintenance of shoot apical meristem identity5.53E-03
100GO:0071482: cellular response to light stimulus6.33E-03
101GO:0001558: regulation of cell growth6.33E-03
102GO:0009097: isoleucine biosynthetic process6.33E-03
103GO:0048507: meristem development7.19E-03
104GO:0048589: developmental growth7.19E-03
105GO:0009631: cold acclimation8.02E-03
106GO:0010205: photoinhibition8.07E-03
107GO:0009098: leucine biosynthetic process8.07E-03
108GO:0042761: very long-chain fatty acid biosynthetic process8.07E-03
109GO:0009637: response to blue light8.80E-03
110GO:0016051: carbohydrate biosynthetic process8.80E-03
111GO:0006949: syncytium formation9.00E-03
112GO:0006535: cysteine biosynthetic process from serine9.00E-03
113GO:0006032: chitin catabolic process9.00E-03
114GO:0009073: aromatic amino acid family biosynthetic process9.96E-03
115GO:0043085: positive regulation of catalytic activity9.96E-03
116GO:0006352: DNA-templated transcription, initiation9.96E-03
117GO:0018119: peptidyl-cysteine S-nitrosylation9.96E-03
118GO:0030001: metal ion transport1.00E-02
119GO:0008361: regulation of cell size1.10E-02
120GO:0010152: pollen maturation1.10E-02
121GO:0010114: response to red light1.14E-02
122GO:0010102: lateral root morphogenesis1.20E-02
123GO:0006006: glucose metabolic process1.20E-02
124GO:0010540: basipetal auxin transport1.31E-02
125GO:0009266: response to temperature stimulus1.31E-02
126GO:0010143: cutin biosynthetic process1.31E-02
127GO:0019253: reductive pentose-phosphate cycle1.31E-02
128GO:0010053: root epidermal cell differentiation1.42E-02
129GO:0009825: multidimensional cell growth1.42E-02
130GO:0010167: response to nitrate1.42E-02
131GO:0006636: unsaturated fatty acid biosynthetic process1.53E-02
132GO:0019344: cysteine biosynthetic process1.65E-02
133GO:0009944: polarity specification of adaxial/abaxial axis1.65E-02
134GO:0000027: ribosomal large subunit assembly1.65E-02
135GO:0051302: regulation of cell division1.77E-02
136GO:0016114: terpenoid biosynthetic process1.89E-02
137GO:0030245: cellulose catabolic process2.01E-02
138GO:0009411: response to UV2.14E-02
139GO:0001944: vasculature development2.14E-02
140GO:0010091: trichome branching2.27E-02
141GO:0045454: cell redox homeostasis2.29E-02
142GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.41E-02
143GO:0080022: primary root development2.55E-02
144GO:0009958: positive gravitropism2.68E-02
145GO:0006662: glycerol ether metabolic process2.68E-02
146GO:0006457: protein folding2.70E-02
147GO:0015986: ATP synthesis coupled proton transport2.83E-02
148GO:0042744: hydrogen peroxide catabolic process3.12E-02
149GO:0009790: embryo development3.20E-02
150GO:0030163: protein catabolic process3.42E-02
151GO:0009567: double fertilization forming a zygote and endosperm3.58E-02
152GO:0009639: response to red or far red light3.58E-02
153GO:0045490: pectin catabolic process3.78E-02
154GO:0009451: RNA modification3.87E-02
155GO:0016126: sterol biosynthetic process4.05E-02
156GO:0009739: response to gibberellin4.23E-02
157GO:0009627: systemic acquired resistance4.38E-02
158GO:0009734: auxin-activated signaling pathway4.54E-02
159GO:0010411: xyloglucan metabolic process4.55E-02
160GO:0009817: defense response to fungus, incompatible interaction4.89E-02
161GO:0030244: cellulose biosynthetic process4.89E-02
162GO:0018298: protein-chromophore linkage4.89E-02
RankGO TermAdjusted P value
1GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
2GO:0004076: biotin synthase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
5GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
6GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
7GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
8GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
9GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
10GO:0019843: rRNA binding2.11E-21
11GO:0003735: structural constituent of ribosome1.52E-15
12GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.51E-09
13GO:0005528: FK506 binding9.38E-08
14GO:0016851: magnesium chelatase activity1.62E-07
15GO:0043023: ribosomal large subunit binding3.50E-05
16GO:0008266: poly(U) RNA binding7.21E-05
17GO:0004130: cytochrome-c peroxidase activity1.43E-04
18GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.43E-04
19GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.11E-04
20GO:0004425: indole-3-glycerol-phosphate synthase activity3.11E-04
21GO:0008184: glycogen phosphorylase activity3.11E-04
22GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.11E-04
23GO:0004645: phosphorylase activity3.11E-04
24GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity3.11E-04
25GO:0045485: omega-6 fatty acid desaturase activity3.11E-04
26GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.11E-04
27GO:0004163: diphosphomevalonate decarboxylase activity3.11E-04
28GO:0009977: proton motive force dependent protein transmembrane transporter activity6.81E-04
29GO:0016630: protochlorophyllide reductase activity6.81E-04
30GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.81E-04
31GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.10E-03
32GO:0008097: 5S rRNA binding1.58E-03
33GO:0052655: L-valine transaminase activity1.58E-03
34GO:0001872: (1->3)-beta-D-glucan binding1.58E-03
35GO:0052656: L-isoleucine transaminase activity1.58E-03
36GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.58E-03
37GO:0004550: nucleoside diphosphate kinase activity1.58E-03
38GO:0052654: L-leucine transaminase activity1.58E-03
39GO:0004659: prenyltransferase activity2.12E-03
40GO:0001053: plastid sigma factor activity2.12E-03
41GO:0010011: auxin binding2.12E-03
42GO:0016987: sigma factor activity2.12E-03
43GO:0052793: pectin acetylesterase activity2.12E-03
44GO:0004084: branched-chain-amino-acid transaminase activity2.12E-03
45GO:0019199: transmembrane receptor protein kinase activity2.12E-03
46GO:0043495: protein anchor2.12E-03
47GO:0042277: peptide binding2.12E-03
48GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.12E-03
49GO:0009922: fatty acid elongase activity2.71E-03
50GO:0003959: NADPH dehydrogenase activity2.71E-03
51GO:0004040: amidase activity2.71E-03
52GO:0016491: oxidoreductase activity3.31E-03
53GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.35E-03
54GO:0016688: L-ascorbate peroxidase activity3.35E-03
55GO:0004124: cysteine synthase activity4.03E-03
56GO:0051920: peroxiredoxin activity4.03E-03
57GO:0015631: tubulin binding4.03E-03
58GO:0051015: actin filament binding4.19E-03
59GO:0019899: enzyme binding4.76E-03
60GO:0004714: transmembrane receptor protein tyrosine kinase activity5.53E-03
61GO:0016209: antioxidant activity5.53E-03
62GO:0016168: chlorophyll binding5.62E-03
63GO:0004252: serine-type endopeptidase activity6.03E-03
64GO:0030170: pyridoxal phosphate binding6.03E-03
65GO:0030247: polysaccharide binding6.26E-03
66GO:0008236: serine-type peptidase activity6.59E-03
67GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity6.93E-03
68GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.19E-03
69GO:0004568: chitinase activity9.00E-03
70GO:0008047: enzyme activator activity9.00E-03
71GO:0015020: glucuronosyltransferase activity9.00E-03
72GO:0031072: heat shock protein binding1.20E-02
73GO:0009982: pseudouridine synthase activity1.20E-02
74GO:0004565: beta-galactosidase activity1.20E-02
75GO:0010329: auxin efflux transmembrane transporter activity1.20E-02
76GO:0016788: hydrolase activity, acting on ester bonds1.42E-02
77GO:0051087: chaperone binding1.77E-02
78GO:0004707: MAP kinase activity1.89E-02
79GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.01E-02
80GO:0052689: carboxylic ester hydrolase activity2.07E-02
81GO:0022891: substrate-specific transmembrane transporter activity2.14E-02
82GO:0030570: pectate lyase activity2.14E-02
83GO:0008810: cellulase activity2.14E-02
84GO:0051082: unfolded protein binding2.19E-02
85GO:0016746: transferase activity, transferring acyl groups2.26E-02
86GO:0003756: protein disulfide isomerase activity2.27E-02
87GO:0047134: protein-disulfide reductase activity2.41E-02
88GO:0008080: N-acetyltransferase activity2.68E-02
89GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.68E-02
90GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.78E-02
91GO:0004791: thioredoxin-disulfide reductase activity2.83E-02
92GO:0050662: coenzyme binding2.83E-02
93GO:0016762: xyloglucan:xyloglucosyl transferase activity3.12E-02
94GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.42E-02
95GO:0003729: mRNA binding3.48E-02
96GO:0016791: phosphatase activity3.58E-02
97GO:0008483: transaminase activity3.73E-02
98GO:0008375: acetylglucosaminyltransferase activity4.38E-02
99GO:0016798: hydrolase activity, acting on glycosyl bonds4.55E-02
100GO:0005509: calcium ion binding4.60E-02
101GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.79E-02
102GO:0042802: identical protein binding4.79E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
3GO:0009515: granal stacked thylakoid0.00E+00
4GO:0009507: chloroplast2.95E-52
5GO:0009570: chloroplast stroma5.38E-49
6GO:0009941: chloroplast envelope2.07E-39
7GO:0009579: thylakoid4.36E-34
8GO:0009535: chloroplast thylakoid membrane1.60E-31
9GO:0009534: chloroplast thylakoid5.08E-31
10GO:0009543: chloroplast thylakoid lumen4.29E-23
11GO:0005840: ribosome1.75E-18
12GO:0031977: thylakoid lumen4.10E-16
13GO:0010007: magnesium chelatase complex3.35E-08
14GO:0030095: chloroplast photosystem II2.10E-06
15GO:0009654: photosystem II oxygen evolving complex5.59E-06
16GO:0019898: extrinsic component of membrane2.70E-05
17GO:0000311: plastid large ribosomal subunit4.85E-05
18GO:0009533: chloroplast stromal thylakoid2.54E-04
19GO:0009547: plastid ribosome3.11E-04
20GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.11E-04
21GO:0009923: fatty acid elongase complex3.11E-04
22GO:0005618: cell wall3.13E-04
23GO:0009538: photosystem I reaction center3.21E-04
24GO:0009295: nucleoid5.79E-04
25GO:0030093: chloroplast photosystem I6.81E-04
26GO:0010287: plastoglobule8.99E-04
27GO:0009536: plastid9.03E-04
28GO:0009508: plastid chromosome9.73E-04
29GO:0033281: TAT protein transport complex1.10E-03
30GO:0009509: chromoplast1.10E-03
31GO:0016020: membrane1.34E-03
32GO:0032432: actin filament bundle1.58E-03
33GO:0015935: small ribosomal subunit1.82E-03
34GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.35E-03
35GO:0009523: photosystem II3.43E-03
36GO:0031969: chloroplast membrane4.29E-03
37GO:0048046: apoplast4.65E-03
38GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.19E-03
39GO:0042644: chloroplast nucleoid7.19E-03
40GO:0015934: large ribosomal subunit8.02E-03
41GO:0009505: plant-type cell wall9.01E-03
42GO:0005884: actin filament9.96E-03
43GO:0032040: small-subunit processome1.10E-02
44GO:0042651: thylakoid membrane1.77E-02
45GO:0015629: actin cytoskeleton2.14E-02
46GO:0009522: photosystem I2.83E-02
47GO:0005802: trans-Golgi network3.69E-02
48GO:0010319: stromule3.73E-02
49GO:0030529: intracellular ribonucleoprotein complex4.05E-02
50GO:0005768: endosome4.44E-02
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Gene type



Gene DE type