co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G18050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0042371: vitamin K biosynthetic process	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0045014: negative regulation of transcription by glucose	0.00E+00
6	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
7	GO:0033494: ferulate metabolic process	0.00E+00
8	GO:0016553: base conversion or substitution editing	0.00E+00
9	GO:0090627: plant epidermal cell differentiation	0.00E+00
10	GO:0046620: regulation of organ growth	5.89E-08
11	GO:0006412: translation	2.99E-07
12	GO:0042254: ribosome biogenesis	6.55E-07
13	GO:0015979: photosynthesis	2.29E-06
14	GO:0009926: auxin polar transport	1.37E-05
15	GO:0009733: response to auxin	2.09E-05
16	GO:0051513: regulation of monopolar cell growth	2.72E-05
17	GO:0010027: thylakoid membrane organization	4.29E-05
18	GO:0015995: chlorophyll biosynthetic process	5.89E-05
19	GO:0006833: water transport	7.44E-05
20	GO:0009735: response to cytokinin	1.82E-04
21	GO:0009772: photosynthetic electron transport in photosystem II	2.04E-04
22	GO:0034220: ion transmembrane transport	2.15E-04
23	GO:0042335: cuticle development	2.15E-04
24	GO:0009958: positive gravitropism	2.39E-04
25	GO:0000481: maturation of 5S rRNA	2.70E-04
26	GO:0042759: long-chain fatty acid biosynthetic process	2.70E-04
27	GO:2000021: regulation of ion homeostasis	2.70E-04
28	GO:0034337: RNA folding	2.70E-04
29	GO:0071588: hydrogen peroxide mediated signaling pathway	2.70E-04
30	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.70E-04
31	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.70E-04
32	GO:0043489: RNA stabilization	2.70E-04
33	GO:0043266: regulation of potassium ion transport	2.70E-04
34	GO:0032544: plastid translation	3.19E-04
35	GO:0010206: photosystem II repair	3.84E-04
36	GO:0001736: establishment of planar polarity	5.94E-04
37	GO:0043255: regulation of carbohydrate biosynthetic process	5.94E-04
38	GO:0010541: acropetal auxin transport	5.94E-04
39	GO:0009734: auxin-activated signaling pathway	5.98E-04
40	GO:0009773: photosynthetic electron transport in photosystem I	6.14E-04
41	GO:0016024: CDP-diacylglycerol biosynthetic process	7.02E-04
42	GO:0006006: glucose metabolic process	7.96E-04
43	GO:0010143: cutin biosynthetic process	8.95E-04
44	GO:0010207: photosystem II assembly	8.95E-04
45	GO:0045493: xylan catabolic process	9.62E-04
46	GO:0010160: formation of animal organ boundary	9.62E-04
47	GO:0015840: urea transport	9.62E-04
48	GO:0090391: granum assembly	9.62E-04
49	GO:0006518: peptide metabolic process	9.62E-04
50	GO:0080055: low-affinity nitrate transport	9.62E-04
51	GO:0045490: pectin catabolic process	1.15E-03
52	GO:0016042: lipid catabolic process	1.25E-03
53	GO:0051639: actin filament network formation	1.38E-03
54	GO:0080170: hydrogen peroxide transmembrane transport	1.38E-03
55	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.38E-03
56	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.38E-03
57	GO:0009650: UV protection	1.38E-03
58	GO:0010306: rhamnogalacturonan II biosynthetic process	1.38E-03
59	GO:1901332: negative regulation of lateral root development	1.38E-03
60	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.76E-03
61	GO:0009664: plant-type cell wall organization	1.77E-03
62	GO:0051764: actin crosslink formation	1.84E-03
63	GO:0006183: GTP biosynthetic process	1.84E-03
64	GO:0022622: root system development	1.84E-03
65	GO:0030104: water homeostasis	1.84E-03
66	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.84E-03
67	GO:0009306: protein secretion	1.92E-03
68	GO:0048443: stamen development	1.92E-03
69	GO:0000413: protein peptidyl-prolyl isomerization	2.24E-03
70	GO:0010236: plastoquinone biosynthetic process	2.35E-03
71	GO:0006751: glutathione catabolic process	2.90E-03
72	GO:0042549: photosystem II stabilization	2.90E-03
73	GO:0009913: epidermal cell differentiation	2.90E-03
74	GO:0006655: phosphatidylglycerol biosynthetic process	2.90E-03
75	GO:0060918: auxin transport	2.90E-03
76	GO:0010337: regulation of salicylic acid metabolic process	2.90E-03
77	GO:0010019: chloroplast-nucleus signaling pathway	3.49E-03
78	GO:0042372: phylloquinone biosynthetic process	3.49E-03
79	GO:0009828: plant-type cell wall loosening	3.61E-03
80	GO:0032880: regulation of protein localization	4.12E-03
81	GO:0009610: response to symbiotic fungus	4.12E-03
82	GO:1900056: negative regulation of leaf senescence	4.12E-03
83	GO:0010196: nonphotochemical quenching	4.12E-03
84	GO:1900057: positive regulation of leaf senescence	4.12E-03
85	GO:0008610: lipid biosynthetic process	4.77E-03
86	GO:0030091: protein repair	4.77E-03
87	GO:0006605: protein targeting	4.77E-03
88	GO:0032508: DNA duplex unwinding	4.77E-03
89	GO:0010311: lateral root formation	5.89E-03
90	GO:0048589: developmental growth	6.20E-03
91	GO:0009051: pentose-phosphate shunt, oxidative branch	6.20E-03
92	GO:0009245: lipid A biosynthetic process	6.20E-03
93	GO:0048527: lateral root development	6.49E-03
94	GO:0009631: cold acclimation	6.49E-03
95	GO:0048829: root cap development	7.75E-03
96	GO:0006949: syncytium formation	7.75E-03
97	GO:0006032: chitin catabolic process	7.75E-03
98	GO:0030001: metal ion transport	8.11E-03
99	GO:0018119: peptidyl-cysteine S-nitrosylation	8.58E-03
100	GO:0048765: root hair cell differentiation	8.58E-03
101	GO:0010015: root morphogenesis	8.58E-03
102	GO:0008361: regulation of cell size	9.44E-03
103	GO:0010152: pollen maturation	9.44E-03
104	GO:0009718: anthocyanin-containing compound biosynthetic process	1.03E-02
105	GO:0010588: cotyledon vascular tissue pattern formation	1.03E-02
106	GO:2000012: regulation of auxin polar transport	1.03E-02
107	GO:0009658: chloroplast organization	1.06E-02
108	GO:0010540: basipetal auxin transport	1.12E-02
109	GO:0019253: reductive pentose-phosphate cycle	1.12E-02
110	GO:0010030: positive regulation of seed germination	1.22E-02
111	GO:0010053: root epidermal cell differentiation	1.22E-02
112	GO:0009825: multidimensional cell growth	1.22E-02
113	GO:0010167: response to nitrate	1.22E-02
114	GO:0071555: cell wall organization	1.24E-02
115	GO:0010025: wax biosynthetic process	1.32E-02
116	GO:0009416: response to light stimulus	1.34E-02
117	GO:0000027: ribosomal large subunit assembly	1.42E-02
118	GO:0051017: actin filament bundle assembly	1.42E-02
119	GO:0016998: cell wall macromolecule catabolic process	1.62E-02
120	GO:0048511: rhythmic process	1.62E-02
121	GO:0003333: amino acid transmembrane transport	1.62E-02
122	GO:0009624: response to nematode	1.77E-02
123	GO:0009411: response to UV	1.84E-02
124	GO:0055085: transmembrane transport	1.92E-02
125	GO:0006869: lipid transport	1.97E-02
126	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.07E-02
127	GO:0008284: positive regulation of cell proliferation	2.07E-02
128	GO:0010087: phloem or xylem histogenesis	2.19E-02
129	GO:0042631: cellular response to water deprivation	2.19E-02
130	GO:0080022: primary root development	2.19E-02
131	GO:0048868: pollen tube development	2.31E-02
132	GO:0010305: leaf vascular tissue pattern formation	2.31E-02
133	GO:0015986: ATP synthesis coupled proton transport	2.43E-02
134	GO:0042752: regulation of circadian rhythm	2.43E-02
135	GO:0048825: cotyledon development	2.55E-02
136	GO:0009790: embryo development	2.59E-02
137	GO:0071554: cell wall organization or biogenesis	2.68E-02
138	GO:0002229: defense response to oomycetes	2.68E-02
139	GO:0000302: response to reactive oxygen species	2.68E-02
140	GO:0030163: protein catabolic process	2.94E-02
141	GO:0009639: response to red or far red light	3.07E-02
142	GO:0009739: response to gibberellin	3.42E-02
143	GO:0016126: sterol biosynthetic process	3.48E-02
144	GO:0009627: systemic acquired resistance	3.77E-02
145	GO:0042742: defense response to bacterium	3.80E-02
146	GO:0010411: xyloglucan metabolic process	3.91E-02
147	GO:0016311: dephosphorylation	4.06E-02
148	GO:0009817: defense response to fungus, incompatible interaction	4.21E-02
149	GO:0030244: cellulose biosynthetic process	4.21E-02
150	GO:0010218: response to far red light	4.51E-02
151	GO:0009826: unidimensional cell growth	4.54E-02
152	GO:0007568: aging	4.66E-02
153	GO:0006865: amino acid transport	4.82E-02
154	GO:0009637: response to blue light	4.97E-02
155	GO:0045087: innate immune response	4.97E-02
156	GO:0016051: carbohydrate biosynthetic process	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
7	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
8	GO:0005528: FK506 binding	7.38E-10
9	GO:0019843: rRNA binding	1.28E-09
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.48E-09
11	GO:0003735: structural constituent of ribosome	2.22E-08
12	GO:0052689: carboxylic ester hydrolase activity	2.09E-05
13	GO:0016851: magnesium chelatase activity	2.72E-05
14	GO:0015250: water channel activity	4.29E-05
15	GO:0010011: auxin binding	4.90E-05
16	GO:0030570: pectate lyase activity	1.52E-04
17	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.70E-04
18	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.70E-04
19	GO:0015200: methylammonium transmembrane transporter activity	2.70E-04
20	GO:0004163: diphosphomevalonate decarboxylase activity	2.70E-04
21	GO:0016788: hydrolase activity, acting on ester bonds	4.71E-04
22	GO:0003839: gamma-glutamylcyclotransferase activity	5.94E-04
23	GO:0003938: IMP dehydrogenase activity	5.94E-04
24	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.94E-04
25	GO:0016829: lyase activity	8.00E-04
26	GO:0008266: poly(U) RNA binding	8.95E-04
27	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.62E-04
28	GO:0080054: low-affinity nitrate transmembrane transporter activity	9.62E-04
29	GO:0050734: hydroxycinnamoyltransferase activity	9.62E-04
30	GO:0043023: ribosomal large subunit binding	1.38E-03
31	GO:0008097: 5S rRNA binding	1.38E-03
32	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.84E-03
33	GO:0046556: alpha-L-arabinofuranosidase activity	1.84E-03
34	GO:0015204: urea transmembrane transporter activity	1.84E-03
35	GO:0004659: prenyltransferase activity	1.84E-03
36	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.84E-03
37	GO:0010328: auxin influx transmembrane transporter activity	1.84E-03
38	GO:0052793: pectin acetylesterase activity	1.84E-03
39	GO:0009044: xylan 1,4-beta-xylosidase activity	1.84E-03
40	GO:0004040: amidase activity	2.35E-03
41	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.90E-03
42	GO:0008519: ammonium transmembrane transporter activity	2.90E-03
43	GO:0004130: cytochrome-c peroxidase activity	2.90E-03
44	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.90E-03
45	GO:0031177: phosphopantetheine binding	2.90E-03
46	GO:0016688: L-ascorbate peroxidase activity	2.90E-03
47	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.49E-03
48	GO:0004017: adenylate kinase activity	3.49E-03
49	GO:0000035: acyl binding	3.49E-03
50	GO:0016791: phosphatase activity	3.61E-03
51	GO:0004252: serine-type endopeptidase activity	4.61E-03
52	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	4.77E-03
53	GO:0008236: serine-type peptidase activity	5.33E-03
54	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.61E-03
55	GO:0003993: acid phosphatase activity	7.44E-03
56	GO:0004568: chitinase activity	7.75E-03
57	GO:0015020: glucuronosyltransferase activity	7.75E-03
58	GO:0050661: NADP binding	8.11E-03
59	GO:0008289: lipid binding	9.27E-03
60	GO:0031072: heat shock protein binding	1.03E-02
61	GO:0010329: auxin efflux transmembrane transporter activity	1.03E-02
62	GO:0008083: growth factor activity	1.12E-02
63	GO:0004707: MAP kinase activity	1.62E-02
64	GO:0004650: polygalacturonase activity	1.62E-02
65	GO:0016746: transferase activity, transferring acyl groups	1.82E-02
66	GO:0003756: protein disulfide isomerase activity	1.95E-02
67	GO:0004722: protein serine/threonine phosphatase activity	1.97E-02
68	GO:0008080: N-acetyltransferase activity	2.31E-02
69	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.31E-02
70	GO:0051015: actin filament binding	2.94E-02
71	GO:0016413: O-acetyltransferase activity	3.34E-02
72	GO:0016168: chlorophyll binding	3.63E-02
73	GO:0008375: acetylglucosaminyltransferase activity	3.77E-02
74	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.88E-02
75	GO:0042802: identical protein binding	3.88E-02
76	GO:0030247: polysaccharide binding	3.91E-02
77	GO:0005096: GTPase activator activity	4.36E-02
78	GO:0004222: metalloendopeptidase activity	4.51E-02
79	GO:0003746: translation elongation factor activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0044391: ribosomal subunit	0.00E+00
4	GO:0009570: chloroplast stroma	5.00E-22
5	GO:0009535: chloroplast thylakoid membrane	9.71E-22
6	GO:0009507: chloroplast	9.75E-22
7	GO:0009579: thylakoid	1.63E-19
8	GO:0009534: chloroplast thylakoid	1.80E-19
9	GO:0009543: chloroplast thylakoid lumen	3.56E-17
10	GO:0009941: chloroplast envelope	1.23E-15
11	GO:0031977: thylakoid lumen	3.16E-13
12	GO:0005840: ribosome	3.25E-08
13	GO:0016020: membrane	1.35E-06
14	GO:0010007: magnesium chelatase complex	1.21E-05
15	GO:0005576: extracellular region	8.12E-05
16	GO:0005618: cell wall	1.44E-04
17	GO:0009505: plant-type cell wall	1.52E-04
18	GO:0042807: central vacuole	2.04E-04
19	GO:0009547: plastid ribosome	2.70E-04
20	GO:0043674: columella	2.70E-04
21	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.70E-04
22	GO:0009515: granal stacked thylakoid	2.70E-04
23	GO:0030093: chloroplast photosystem I	5.94E-04
24	GO:0009508: plastid chromosome	7.96E-04
25	GO:0030095: chloroplast photosystem II	8.95E-04
26	GO:0009654: photosystem II oxygen evolving complex	1.35E-03
27	GO:0009531: secondary cell wall	1.38E-03
28	GO:0032432: actin filament bundle	1.38E-03
29	GO:0019898: extrinsic component of membrane	2.79E-03
30	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.90E-03
31	GO:0009295: nucleoid	3.83E-03
32	GO:0009986: cell surface	4.12E-03
33	GO:0009533: chloroplast stromal thylakoid	4.12E-03
34	GO:0009538: photosystem I reaction center	4.77E-03
35	GO:0000326: protein storage vacuole	5.47E-03
36	GO:0009705: plant-type vacuole membrane	6.08E-03
37	GO:0042644: chloroplast nucleoid	6.20E-03
38	GO:0008180: COP9 signalosome	6.20E-03
39	GO:0005884: actin filament	8.58E-03
40	GO:0005887: integral component of plasma membrane	8.93E-03
41	GO:0000311: plastid large ribosomal subunit	9.44E-03
42	GO:0032040: small-subunit processome	9.44E-03
43	GO:0005886: plasma membrane	1.28E-02
44	GO:0031969: chloroplast membrane	1.40E-02
45	GO:0015935: small ribosomal subunit	1.62E-02
46	GO:0048046: apoplast	1.84E-02
47	GO:0009522: photosystem I	2.43E-02
48	GO:0009523: photosystem II	2.55E-02
49	GO:0010319: stromule	3.21E-02
50	GO:0030529: intracellular ribonucleoprotein complex	3.48E-02
51	GO:0019005: SCF ubiquitin ligase complex	4.21E-02
52	GO:0022626: cytosolic ribosome	4.40E-02