co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G18000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
2	GO:1904526: regulation of microtubule binding	0.00E+00
3	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
4	GO:0030155: regulation of cell adhesion	0.00E+00
5	GO:0035304: regulation of protein dephosphorylation	3.97E-08
6	GO:0010207: photosystem II assembly	1.81E-07
7	GO:0042549: photosystem II stabilization	1.99E-06
8	GO:0010205: photoinhibition	1.14E-05
9	GO:0019684: photosynthesis, light reaction	1.68E-05
10	GO:0005980: glycogen catabolic process	2.30E-05
11	GO:0010480: microsporocyte differentiation	2.30E-05
12	GO:0010028: xanthophyll cycle	2.30E-05
13	GO:0034337: RNA folding	2.30E-05
14	GO:0018026: peptidyl-lysine monomethylation	5.89E-05
15	GO:0016122: xanthophyll metabolic process	5.89E-05
16	GO:0048281: inflorescence morphogenesis	1.04E-04
17	GO:0010148: transpiration	1.55E-04
18	GO:0015994: chlorophyll metabolic process	2.12E-04
19	GO:0042938: dipeptide transport	2.12E-04
20	GO:0015979: photosynthesis	2.51E-04
21	GO:1901259: chloroplast rRNA processing	4.04E-04
22	GO:0045926: negative regulation of growth	4.04E-04
23	GO:0009664: plant-type cell wall organization	4.63E-04
24	GO:0048437: floral organ development	4.74E-04
25	GO:0070370: cellular heat acclimation	4.74E-04
26	GO:0010103: stomatal complex morphogenesis	4.74E-04
27	GO:0019827: stem cell population maintenance	5.46E-04
28	GO:0006353: DNA-templated transcription, termination	5.46E-04
29	GO:0001558: regulation of cell growth	6.21E-04
30	GO:0009735: response to cytokinin	6.51E-04
31	GO:0006535: cysteine biosynthetic process from serine	8.59E-04
32	GO:0009773: photosynthetic electron transport in photosystem I	9.42E-04
33	GO:0048229: gametophyte development	9.42E-04
34	GO:0046856: phosphatidylinositol dephosphorylation	9.42E-04
35	GO:0015706: nitrate transport	1.03E-03
36	GO:0010075: regulation of meristem growth	1.12E-03
37	GO:0009266: response to temperature stimulus	1.20E-03
38	GO:0009934: regulation of meristem structural organization	1.20E-03
39	GO:0006833: water transport	1.39E-03
40	GO:0009944: polarity specification of adaxial/abaxial axis	1.49E-03
41	GO:0019344: cysteine biosynthetic process	1.49E-03
42	GO:0051302: regulation of cell division	1.59E-03
43	GO:0016998: cell wall macromolecule catabolic process	1.70E-03
44	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.91E-03
45	GO:0001944: vasculature development	1.91E-03
46	GO:0080022: primary root development	2.24E-03
47	GO:0034220: ion transmembrane transport	2.24E-03
48	GO:0048653: anther development	2.24E-03
49	GO:0000302: response to reactive oxygen species	2.72E-03
50	GO:0009828: plant-type cell wall loosening	3.09E-03
51	GO:0009567: double fertilization forming a zygote and endosperm	3.09E-03
52	GO:0010411: xyloglucan metabolic process	3.89E-03
53	GO:0000160: phosphorelay signal transduction system	4.32E-03
54	GO:0016051: carbohydrate biosynthetic process	4.90E-03
55	GO:0034599: cellular response to oxidative stress	5.05E-03
56	GO:0006631: fatty acid metabolic process	5.52E-03
57	GO:0042546: cell wall biogenesis	6.00E-03
58	GO:0009965: leaf morphogenesis	6.33E-03
59	GO:0009736: cytokinin-activated signaling pathway	7.18E-03
60	GO:0006857: oligopeptide transport	7.52E-03
61	GO:0009624: response to nematode	9.17E-03
62	GO:0009414: response to water deprivation	1.12E-02
63	GO:0042742: defense response to bacterium	1.15E-02
64	GO:0042744: hydrogen peroxide catabolic process	1.18E-02
65	GO:0006470: protein dephosphorylation	1.48E-02
66	GO:0009826: unidimensional cell growth	1.79E-02
67	GO:0009860: pollen tube growth	1.94E-02
68	GO:0010200: response to chitin	2.19E-02
69	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.19E-02
70	GO:0006468: protein phosphorylation	2.31E-02
71	GO:0032259: methylation	2.74E-02
72	GO:0016042: lipid catabolic process	2.77E-02
73	GO:0006629: lipid metabolic process	2.83E-02
74	GO:0009408: response to heat	2.83E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0010242: oxygen evolving activity	0.00E+00
3	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	2.30E-05
4	GO:0004645: phosphorylase activity	2.30E-05
5	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.30E-05
6	GO:0008184: glycogen phosphorylase activity	2.30E-05
7	GO:0008266: poly(U) RNA binding	2.72E-05
8	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.55E-04
9	GO:0019199: transmembrane receptor protein kinase activity	2.12E-04
10	GO:0042277: peptide binding	2.12E-04
11	GO:0016279: protein-lysine N-methyltransferase activity	2.12E-04
12	GO:0042936: dipeptide transporter activity	2.12E-04
13	GO:0004130: cytochrome-c peroxidase activity	3.37E-04
14	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	3.37E-04
15	GO:0004124: cysteine synthase activity	4.04E-04
16	GO:0015020: glucuronosyltransferase activity	8.59E-04
17	GO:0047372: acylglycerol lipase activity	9.42E-04
18	GO:0030170: pyridoxal phosphate binding	9.50E-04
19	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.03E-03
20	GO:0033612: receptor serine/threonine kinase binding	1.70E-03
21	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.72E-03
22	GO:0000156: phosphorelay response regulator activity	2.96E-03
23	GO:0015250: water channel activity	3.48E-03
24	GO:0016168: chlorophyll binding	3.62E-03
25	GO:0008375: acetylglucosaminyltransferase activity	3.75E-03
26	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.89E-03
27	GO:0016787: hydrolase activity	4.54E-03
28	GO:0008026: ATP-dependent helicase activity	9.56E-03
29	GO:0005509: calcium ion binding	1.06E-02
30	GO:0019843: rRNA binding	1.07E-02
31	GO:0003743: translation initiation factor activity	1.50E-02
32	GO:0003729: mRNA binding	1.71E-02
33	GO:0008168: methyltransferase activity	1.79E-02
34	GO:0004601: peroxidase activity	1.84E-02
35	GO:0016788: hydrolase activity, acting on ester bonds	1.86E-02
36	GO:0005515: protein binding	1.94E-02
37	GO:0052689: carboxylic ester hydrolase activity	2.30E-02
38	GO:0003723: RNA binding	2.34E-02
39	GO:0004722: protein serine/threonine phosphatase activity	2.60E-02
40	GO:0016757: transferase activity, transferring glycosyl groups	3.92E-02
41	GO:0016740: transferase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	4.07E-12
2	GO:0009535: chloroplast thylakoid membrane	1.57E-09
3	GO:0009543: chloroplast thylakoid lumen	2.21E-08
4	GO:0009507: chloroplast	2.76E-08
5	GO:0031977: thylakoid lumen	1.56E-07
6	GO:0030095: chloroplast photosystem II	1.81E-07
7	GO:0009579: thylakoid	2.36E-07
8	GO:0009570: chloroplast stroma	2.49E-05
9	GO:0009654: photosystem II oxygen evolving complex	4.55E-05
10	GO:0010287: plastoglobule	4.71E-05
11	GO:0030093: chloroplast photosystem I	5.89E-05
12	GO:0009522: photosystem I	9.77E-05
13	GO:0009509: chromoplast	1.04E-04
14	GO:0019898: extrinsic component of membrane	1.06E-04
15	GO:0042646: plastid nucleoid	1.55E-04
16	GO:0055035: plastid thylakoid membrane	2.73E-04
17	GO:0016363: nuclear matrix	4.04E-04
18	GO:0009538: photosystem I reaction center	5.46E-04
19	GO:0032040: small-subunit processome	1.03E-03
20	GO:0016020: membrane	3.98E-03
21	GO:0048046: apoplast	8.89E-03
22	GO:0009941: chloroplast envelope	1.23E-02
23	GO:0009536: plastid	1.41E-02
24	GO:0005887: integral component of plasma membrane	3.51E-02
25	GO:0016021: integral component of membrane	4.46E-02
26	GO:0005618: cell wall	4.55E-02