Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G17390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031508: pericentric heterochromatin assembly0.00E+00
2GO:0080164: regulation of nitric oxide metabolic process2.30E-05
3GO:0019354: siroheme biosynthetic process2.30E-05
4GO:0090309: positive regulation of methylation-dependent chromatin silencing5.89E-05
5GO:0071497: cellular response to freezing5.89E-05
6GO:0051592: response to calcium ion5.89E-05
7GO:0010424: DNA methylation on cytosine within a CG sequence5.89E-05
8GO:0019722: calcium-mediated signaling6.90E-05
9GO:0000271: polysaccharide biosynthetic process8.26E-05
10GO:0045489: pectin biosynthetic process9.01E-05
11GO:0032776: DNA methylation on cytosine1.04E-04
12GO:0007267: cell-cell signaling1.50E-04
13GO:0046345: abscisic acid catabolic process2.12E-04
14GO:0016051: carbohydrate biosynthetic process2.87E-04
15GO:0009612: response to mechanical stimulus4.04E-04
16GO:0051510: regulation of unidimensional cell growth4.74E-04
17GO:0010038: response to metal ion4.74E-04
18GO:0048574: long-day photoperiodism, flowering6.21E-04
19GO:0006779: porphyrin-containing compound biosynthetic process7.77E-04
20GO:0043069: negative regulation of programmed cell death8.59E-04
21GO:0006325: chromatin organization8.59E-04
22GO:0010216: maintenance of DNA methylation9.42E-04
23GO:0000038: very long-chain fatty acid metabolic process9.42E-04
24GO:0009698: phenylpropanoid metabolic process9.42E-04
25GO:0016024: CDP-diacylglycerol biosynthetic process1.03E-03
26GO:0018107: peptidyl-threonine phosphorylation1.12E-03
27GO:0034605: cellular response to heat1.20E-03
28GO:0010143: cutin biosynthetic process1.20E-03
29GO:0009826: unidimensional cell growth1.71E-03
30GO:0009411: response to UV1.91E-03
31GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.91E-03
32GO:0010584: pollen exine formation2.02E-03
33GO:0009741: response to brassinosteroid2.36E-03
34GO:0010268: brassinosteroid homeostasis2.36E-03
35GO:0009646: response to absence of light2.48E-03
36GO:0009791: post-embryonic development2.60E-03
37GO:0016132: brassinosteroid biosynthetic process2.72E-03
38GO:0009639: response to red or far red light3.09E-03
39GO:0009828: plant-type cell wall loosening3.09E-03
40GO:0016125: sterol metabolic process3.09E-03
41GO:0009751: response to salicylic acid3.17E-03
42GO:0006629: lipid metabolic process3.21E-03
43GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.62E-03
44GO:0010411: xyloglucan metabolic process3.89E-03
45GO:0016311: dephosphorylation4.03E-03
46GO:0048527: lateral root development4.60E-03
47GO:0045087: innate immune response4.90E-03
48GO:0009637: response to blue light4.90E-03
49GO:0042542: response to hydrogen peroxide5.68E-03
50GO:0042546: cell wall biogenesis6.00E-03
51GO:0031347: regulation of defense response6.66E-03
52GO:0009909: regulation of flower development7.70E-03
53GO:0016569: covalent chromatin modification8.79E-03
54GO:0018105: peptidyl-serine phosphorylation9.36E-03
55GO:0009742: brassinosteroid mediated signaling pathway9.56E-03
56GO:0071555: cell wall organization1.15E-02
57GO:0006633: fatty acid biosynthetic process1.26E-02
58GO:0040008: regulation of growth1.30E-02
59GO:0006470: protein dephosphorylation1.48E-02
60GO:0009860: pollen tube growth1.94E-02
61GO:0009723: response to ethylene2.04E-02
62GO:0010200: response to chitin2.19E-02
63GO:0046777: protein autophosphorylation2.25E-02
64GO:0045454: cell redox homeostasis2.43E-02
65GO:0032259: methylation2.74E-02
66GO:0009408: response to heat2.83E-02
67GO:0009753: response to jasmonic acid2.97E-02
68GO:0008152: metabolic process3.03E-02
69GO:0009873: ethylene-activated signaling pathway3.39E-02
70GO:0006357: regulation of transcription from RNA polymerase II promoter3.45E-02
71GO:0016567: protein ubiquitination3.51E-02
72GO:0009738: abscisic acid-activated signaling pathway4.15E-02
73GO:0035556: intracellular signal transduction4.42E-02
74GO:0051301: cell division4.52E-02
75GO:0045893: positive regulation of transcription, DNA-templated4.69E-02
RankGO TermAdjusted P value
1GO:0004851: uroporphyrin-III C-methyltransferase activity0.00E+00
2GO:0080132: fatty acid alpha-hydroxylase activity2.30E-05
3GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity5.66E-05
4GO:0010295: (+)-abscisic acid 8'-hydroxylase activity1.04E-04
5GO:0010429: methyl-CpNpN binding1.04E-04
6GO:0010428: methyl-CpNpG binding1.04E-04
7GO:0010385: double-stranded methylated DNA binding2.12E-04
8GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.37E-04
9GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.37E-04
10GO:0016207: 4-coumarate-CoA ligase activity6.98E-04
11GO:0016758: transferase activity, transferring hexosyl groups8.40E-04
12GO:0008327: methyl-CpG binding9.42E-04
13GO:0016762: xyloglucan:xyloglucosyl transferase activity2.72E-03
14GO:0004871: signal transducer activity2.74E-03
15GO:0016791: phosphatase activity3.09E-03
16GO:0016798: hydrolase activity, acting on glycosyl bonds3.89E-03
17GO:0004806: triglyceride lipase activity3.89E-03
18GO:0042393: histone binding5.36E-03
19GO:0003677: DNA binding5.87E-03
20GO:0016298: lipase activity7.35E-03
21GO:0005516: calmodulin binding8.53E-03
22GO:0016874: ligase activity8.79E-03
23GO:0015035: protein disulfide oxidoreductase activity9.36E-03
24GO:0016746: transferase activity, transferring acyl groups9.36E-03
25GO:0005506: iron ion binding1.13E-02
26GO:0044212: transcription regulatory region DNA binding1.15E-02
27GO:0004672: protein kinase activity1.69E-02
28GO:0008168: methyltransferase activity1.79E-02
29GO:0003682: chromatin binding1.91E-02
30GO:0061630: ubiquitin protein ligase activity2.22E-02
31GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting2.43E-02
32GO:0004722: protein serine/threonine phosphatase activity2.60E-02
33GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding2.63E-02
34GO:0009055: electron carrier activity2.97E-02
35GO:0016757: transferase activity, transferring glycosyl groups3.92E-02
RankGO TermAdjusted P value
1GO:0010369: chromocenter4.04E-04
2GO:0005720: nuclear heterochromatin6.98E-04
3GO:0048046: apoplast1.76E-03
4GO:0015629: actin cytoskeleton1.91E-03
5GO:0009506: plasmodesma3.22E-03
6GO:0031225: anchored component of membrane8.84E-03
7GO:0009505: plant-type cell wall1.44E-02
8GO:0005615: extracellular space1.46E-02
9GO:0000139: Golgi membrane1.56E-02
10GO:0005794: Golgi apparatus1.97E-02
11GO:0016021: integral component of membrane2.07E-02
12GO:0005576: extracellular region3.46E-02
13GO:0005887: integral component of plasma membrane3.51E-02
14GO:0005618: cell wall4.55E-02
15GO:0009579: thylakoid4.83E-02
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Gene type



Gene DE type