GO Enrichment Analysis of Co-expressed Genes with
AT3G16290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 4 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 5 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 6 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 7 | GO:0006642: triglyceride mobilization | 0.00E+00 |
| 8 | GO:0015979: photosynthesis | 5.07E-08 |
| 9 | GO:0009658: chloroplast organization | 5.06E-06 |
| 10 | GO:0042254: ribosome biogenesis | 5.35E-06 |
| 11 | GO:0009773: photosynthetic electron transport in photosystem I | 5.46E-06 |
| 12 | GO:0006412: translation | 6.06E-06 |
| 13 | GO:0015995: chlorophyll biosynthetic process | 8.43E-06 |
| 14 | GO:0019253: reductive pentose-phosphate cycle | 1.09E-05 |
| 15 | GO:0010236: plastoquinone biosynthetic process | 2.48E-05 |
| 16 | GO:0010019: chloroplast-nucleus signaling pathway | 5.23E-05 |
| 17 | GO:0048564: photosystem I assembly | 9.09E-05 |
| 18 | GO:0009735: response to cytokinin | 9.39E-05 |
| 19 | GO:0046166: glyceraldehyde-3-phosphate biosynthetic process | 1.35E-04 |
| 20 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.35E-04 |
| 21 | GO:0006426: glycyl-tRNA aminoacylation | 1.35E-04 |
| 22 | GO:1904964: positive regulation of phytol biosynthetic process | 1.35E-04 |
| 23 | GO:0042371: vitamin K biosynthetic process | 1.35E-04 |
| 24 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.35E-04 |
| 25 | GO:0006457: protein folding | 2.11E-04 |
| 26 | GO:0006094: gluconeogenesis | 3.08E-04 |
| 27 | GO:0080183: response to photooxidative stress | 3.11E-04 |
| 28 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.11E-04 |
| 29 | GO:0010270: photosystem II oxygen evolving complex assembly | 3.11E-04 |
| 30 | GO:0006695: cholesterol biosynthetic process | 3.11E-04 |
| 31 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.11E-04 |
| 32 | GO:0019563: glycerol catabolic process | 5.13E-04 |
| 33 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 5.13E-04 |
| 34 | GO:0051604: protein maturation | 5.13E-04 |
| 35 | GO:0010253: UDP-rhamnose biosynthetic process | 5.13E-04 |
| 36 | GO:0032504: multicellular organism reproduction | 5.13E-04 |
| 37 | GO:0006000: fructose metabolic process | 5.13E-04 |
| 38 | GO:0006096: glycolytic process | 7.09E-04 |
| 39 | GO:0006228: UTP biosynthetic process | 7.34E-04 |
| 40 | GO:0010088: phloem development | 7.34E-04 |
| 41 | GO:0016556: mRNA modification | 7.34E-04 |
| 42 | GO:2001141: regulation of RNA biosynthetic process | 7.34E-04 |
| 43 | GO:0051085: chaperone mediated protein folding requiring cofactor | 7.34E-04 |
| 44 | GO:0006241: CTP biosynthetic process | 7.34E-04 |
| 45 | GO:0006165: nucleoside diphosphate phosphorylation | 7.34E-04 |
| 46 | GO:0000413: protein peptidyl-prolyl isomerization | 8.75E-04 |
| 47 | GO:0006808: regulation of nitrogen utilization | 9.73E-04 |
| 48 | GO:0006183: GTP biosynthetic process | 9.73E-04 |
| 49 | GO:0015994: chlorophyll metabolic process | 9.73E-04 |
| 50 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.23E-03 |
| 51 | GO:0032973: amino acid export | 1.51E-03 |
| 52 | GO:0006014: D-ribose metabolic process | 1.51E-03 |
| 53 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.51E-03 |
| 54 | GO:0010358: leaf shaping | 1.51E-03 |
| 55 | GO:0006828: manganese ion transport | 1.51E-03 |
| 56 | GO:0010027: thylakoid membrane organization | 1.64E-03 |
| 57 | GO:0055114: oxidation-reduction process | 1.76E-03 |
| 58 | GO:0042372: phylloquinone biosynthetic process | 1.81E-03 |
| 59 | GO:0010189: vitamin E biosynthetic process | 1.81E-03 |
| 60 | GO:0009854: oxidative photosynthetic carbon pathway | 1.81E-03 |
| 61 | GO:0010555: response to mannitol | 1.81E-03 |
| 62 | GO:0042026: protein refolding | 1.81E-03 |
| 63 | GO:0006400: tRNA modification | 2.12E-03 |
| 64 | GO:0045995: regulation of embryonic development | 2.12E-03 |
| 65 | GO:0009772: photosynthetic electron transport in photosystem II | 2.12E-03 |
| 66 | GO:0043090: amino acid import | 2.12E-03 |
| 67 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.12E-03 |
| 68 | GO:0018298: protein-chromophore linkage | 2.14E-03 |
| 69 | GO:0045292: mRNA cis splicing, via spliceosome | 2.46E-03 |
| 70 | GO:0009819: drought recovery | 2.46E-03 |
| 71 | GO:0009642: response to light intensity | 2.46E-03 |
| 72 | GO:0009637: response to blue light | 2.70E-03 |
| 73 | GO:0009657: plastid organization | 2.81E-03 |
| 74 | GO:0032544: plastid translation | 2.81E-03 |
| 75 | GO:0006002: fructose 6-phosphate metabolic process | 2.81E-03 |
| 76 | GO:0071482: cellular response to light stimulus | 2.81E-03 |
| 77 | GO:0034599: cellular response to oxidative stress | 2.82E-03 |
| 78 | GO:0009793: embryo development ending in seed dormancy | 2.84E-03 |
| 79 | GO:0080144: amino acid homeostasis | 3.17E-03 |
| 80 | GO:0033384: geranyl diphosphate biosynthetic process | 3.17E-03 |
| 81 | GO:0000373: Group II intron splicing | 3.17E-03 |
| 82 | GO:0045337: farnesyl diphosphate biosynthetic process | 3.17E-03 |
| 83 | GO:0010114: response to red light | 3.47E-03 |
| 84 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.55E-03 |
| 85 | GO:0045036: protein targeting to chloroplast | 3.95E-03 |
| 86 | GO:0010192: mucilage biosynthetic process | 3.95E-03 |
| 87 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.95E-03 |
| 88 | GO:0006415: translational termination | 4.36E-03 |
| 89 | GO:0009073: aromatic amino acid family biosynthetic process | 4.36E-03 |
| 90 | GO:0043085: positive regulation of catalytic activity | 4.36E-03 |
| 91 | GO:0006352: DNA-templated transcription, initiation | 4.36E-03 |
| 92 | GO:0006816: calcium ion transport | 4.36E-03 |
| 93 | GO:0045454: cell redox homeostasis | 5.04E-03 |
| 94 | GO:0006006: glucose metabolic process | 5.22E-03 |
| 95 | GO:0005986: sucrose biosynthetic process | 5.22E-03 |
| 96 | GO:0010020: chloroplast fission | 5.68E-03 |
| 97 | GO:0005985: sucrose metabolic process | 6.14E-03 |
| 98 | GO:0019344: cysteine biosynthetic process | 7.11E-03 |
| 99 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.62E-03 |
| 100 | GO:0008299: isoprenoid biosynthetic process | 7.62E-03 |
| 101 | GO:0016575: histone deacetylation | 7.62E-03 |
| 102 | GO:0006418: tRNA aminoacylation for protein translation | 7.62E-03 |
| 103 | GO:0016114: terpenoid biosynthetic process | 8.14E-03 |
| 104 | GO:0061077: chaperone-mediated protein folding | 8.14E-03 |
| 105 | GO:0016226: iron-sulfur cluster assembly | 8.67E-03 |
| 106 | GO:0007005: mitochondrion organization | 8.67E-03 |
| 107 | GO:0009411: response to UV | 9.21E-03 |
| 108 | GO:0010214: seed coat development | 9.77E-03 |
| 109 | GO:0080022: primary root development | 1.09E-02 |
| 110 | GO:0006662: glycerol ether metabolic process | 1.15E-02 |
| 111 | GO:0009741: response to brassinosteroid | 1.15E-02 |
| 112 | GO:0010268: brassinosteroid homeostasis | 1.15E-02 |
| 113 | GO:0009451: RNA modification | 1.17E-02 |
| 114 | GO:0007018: microtubule-based movement | 1.21E-02 |
| 115 | GO:0019252: starch biosynthetic process | 1.27E-02 |
| 116 | GO:0000302: response to reactive oxygen species | 1.34E-02 |
| 117 | GO:0016132: brassinosteroid biosynthetic process | 1.34E-02 |
| 118 | GO:0016032: viral process | 1.40E-02 |
| 119 | GO:0016125: sterol metabolic process | 1.53E-02 |
| 120 | GO:0010286: heat acclimation | 1.60E-02 |
| 121 | GO:0071805: potassium ion transmembrane transport | 1.60E-02 |
| 122 | GO:0009627: systemic acquired resistance | 1.88E-02 |
| 123 | GO:0048481: plant ovule development | 2.09E-02 |
| 124 | GO:0008219: cell death | 2.09E-02 |
| 125 | GO:0048366: leaf development | 2.09E-02 |
| 126 | GO:0010218: response to far red light | 2.24E-02 |
| 127 | GO:0009631: cold acclimation | 2.32E-02 |
| 128 | GO:0009867: jasmonic acid mediated signaling pathway | 2.48E-02 |
| 129 | GO:0016051: carbohydrate biosynthetic process | 2.48E-02 |
| 130 | GO:0009853: photorespiration | 2.48E-02 |
| 131 | GO:0042542: response to hydrogen peroxide | 2.88E-02 |
| 132 | GO:0042538: hyperosmotic salinity response | 3.49E-02 |
| 133 | GO:0009585: red, far-red light phototransduction | 3.67E-02 |
| 134 | GO:0006813: potassium ion transport | 3.67E-02 |
| 135 | GO:0009409: response to cold | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 2 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 3 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 4 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 5 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 6 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 7 | GO:0005048: signal sequence binding | 0.00E+00 |
| 8 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 9 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 10 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 11 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 12 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 13 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 14 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 15 | GO:0019843: rRNA binding | 5.55E-10 |
| 16 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.72E-06 |
| 17 | GO:0003735: structural constituent of ribosome | 3.59E-06 |
| 18 | GO:0010490: UDP-4-keto-rhamnose-4-keto-reductase activity | 1.35E-04 |
| 19 | GO:0004820: glycine-tRNA ligase activity | 1.35E-04 |
| 20 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.35E-04 |
| 21 | GO:0010012: steroid 22-alpha hydroxylase activity | 1.35E-04 |
| 22 | GO:0010489: UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity | 1.35E-04 |
| 23 | GO:0004807: triose-phosphate isomerase activity | 1.35E-04 |
| 24 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.35E-04 |
| 25 | GO:0050377: UDP-glucose 4,6-dehydratase activity | 3.11E-04 |
| 26 | GO:0016630: protochlorophyllide reductase activity | 3.11E-04 |
| 27 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.11E-04 |
| 28 | GO:0047746: chlorophyllase activity | 3.11E-04 |
| 29 | GO:0008460: dTDP-glucose 4,6-dehydratase activity | 3.11E-04 |
| 30 | GO:0010280: UDP-L-rhamnose synthase activity | 3.11E-04 |
| 31 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.11E-04 |
| 32 | GO:0043621: protein self-association | 4.34E-04 |
| 33 | GO:0005528: FK506 binding | 4.84E-04 |
| 34 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 5.13E-04 |
| 35 | GO:0017150: tRNA dihydrouridine synthase activity | 5.13E-04 |
| 36 | GO:0002161: aminoacyl-tRNA editing activity | 5.13E-04 |
| 37 | GO:0048487: beta-tubulin binding | 7.34E-04 |
| 38 | GO:0016149: translation release factor activity, codon specific | 7.34E-04 |
| 39 | GO:0004550: nucleoside diphosphate kinase activity | 7.34E-04 |
| 40 | GO:0008097: 5S rRNA binding | 7.34E-04 |
| 41 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 7.34E-04 |
| 42 | GO:0051082: unfolded protein binding | 8.92E-04 |
| 43 | GO:0043495: protein anchor | 9.73E-04 |
| 44 | GO:0004659: prenyltransferase activity | 9.73E-04 |
| 45 | GO:0001053: plastid sigma factor activity | 9.73E-04 |
| 46 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 9.73E-04 |
| 47 | GO:0016987: sigma factor activity | 9.73E-04 |
| 48 | GO:1990137: plant seed peroxidase activity | 9.73E-04 |
| 49 | GO:0003959: NADPH dehydrogenase activity | 1.23E-03 |
| 50 | GO:0004040: amidase activity | 1.23E-03 |
| 51 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.23E-03 |
| 52 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.30E-03 |
| 53 | GO:0016688: L-ascorbate peroxidase activity | 1.51E-03 |
| 54 | GO:0004130: cytochrome-c peroxidase activity | 1.51E-03 |
| 55 | GO:0016168: chlorophyll binding | 1.74E-03 |
| 56 | GO:0004747: ribokinase activity | 1.81E-03 |
| 57 | GO:0051920: peroxiredoxin activity | 1.81E-03 |
| 58 | GO:0015631: tubulin binding | 1.81E-03 |
| 59 | GO:0019899: enzyme binding | 2.12E-03 |
| 60 | GO:0016831: carboxy-lyase activity | 2.12E-03 |
| 61 | GO:0004033: aldo-keto reductase (NADP) activity | 2.46E-03 |
| 62 | GO:0008865: fructokinase activity | 2.46E-03 |
| 63 | GO:0016209: antioxidant activity | 2.46E-03 |
| 64 | GO:0008312: 7S RNA binding | 2.46E-03 |
| 65 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 2.81E-03 |
| 66 | GO:0003747: translation release factor activity | 3.17E-03 |
| 67 | GO:0004337: geranyltranstransferase activity | 3.17E-03 |
| 68 | GO:0005384: manganese ion transmembrane transporter activity | 3.55E-03 |
| 69 | GO:0008047: enzyme activator activity | 3.95E-03 |
| 70 | GO:0044183: protein binding involved in protein folding | 4.36E-03 |
| 71 | GO:0004161: dimethylallyltranstransferase activity | 4.36E-03 |
| 72 | GO:0000049: tRNA binding | 4.79E-03 |
| 73 | GO:0015095: magnesium ion transmembrane transporter activity | 5.22E-03 |
| 74 | GO:0031072: heat shock protein binding | 5.22E-03 |
| 75 | GO:0008266: poly(U) RNA binding | 5.68E-03 |
| 76 | GO:0031409: pigment binding | 6.62E-03 |
| 77 | GO:0051536: iron-sulfur cluster binding | 7.11E-03 |
| 78 | GO:0004407: histone deacetylase activity | 7.11E-03 |
| 79 | GO:0004519: endonuclease activity | 7.32E-03 |
| 80 | GO:0015079: potassium ion transmembrane transporter activity | 7.62E-03 |
| 81 | GO:0005509: calcium ion binding | 7.79E-03 |
| 82 | GO:0004176: ATP-dependent peptidase activity | 8.14E-03 |
| 83 | GO:0022891: substrate-specific transmembrane transporter activity | 9.21E-03 |
| 84 | GO:0047134: protein-disulfide reductase activity | 1.03E-02 |
| 85 | GO:0004812: aminoacyl-tRNA ligase activity | 1.03E-02 |
| 86 | GO:0004791: thioredoxin-disulfide reductase activity | 1.21E-02 |
| 87 | GO:0016491: oxidoreductase activity | 1.33E-02 |
| 88 | GO:0042802: identical protein binding | 1.46E-02 |
| 89 | GO:0046872: metal ion binding | 1.52E-02 |
| 90 | GO:0008237: metallopeptidase activity | 1.60E-02 |
| 91 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.02E-02 |
| 92 | GO:0008236: serine-type peptidase activity | 2.02E-02 |
| 93 | GO:0005524: ATP binding | 2.09E-02 |
| 94 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.64E-02 |
| 95 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.72E-02 |
| 96 | GO:0050661: NADP binding | 2.72E-02 |
| 97 | GO:0003723: RNA binding | 2.97E-02 |
| 98 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.14E-02 |
| 99 | GO:0005198: structural molecule activity | 3.23E-02 |
| 100 | GO:0003924: GTPase activity | 3.26E-02 |
| 101 | GO:0051287: NAD binding | 3.40E-02 |
| 102 | GO:0009055: electron carrier activity | 3.49E-02 |
| 103 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.67E-02 |
| 104 | GO:0003777: microtubule motor activity | 3.95E-02 |
| 105 | GO:0015171: amino acid transmembrane transporter activity | 3.95E-02 |
| 106 | GO:0015035: protein disulfide oxidoreductase activity | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 5.32E-56 |
| 2 | GO:0009570: chloroplast stroma | 4.68E-32 |
| 3 | GO:0009941: chloroplast envelope | 7.53E-29 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.78E-19 |
| 5 | GO:0009579: thylakoid | 2.07E-19 |
| 6 | GO:0031977: thylakoid lumen | 9.47E-12 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 1.46E-11 |
| 8 | GO:0009534: chloroplast thylakoid | 1.43E-08 |
| 9 | GO:0005840: ribosome | 1.65E-08 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 2.26E-05 |
| 11 | GO:0019898: extrinsic component of membrane | 7.28E-05 |
| 12 | GO:0031969: chloroplast membrane | 1.02E-04 |
| 13 | GO:0009547: plastid ribosome | 1.35E-04 |
| 14 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.35E-04 |
| 15 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.40E-04 |
| 16 | GO:0000311: plastid large ribosomal subunit | 2.70E-04 |
| 17 | GO:0080085: signal recognition particle, chloroplast targeting | 3.11E-04 |
| 18 | GO:0042651: thylakoid membrane | 5.33E-04 |
| 19 | GO:0009532: plastid stroma | 5.84E-04 |
| 20 | GO:0022626: cytosolic ribosome | 5.99E-04 |
| 21 | GO:0009526: plastid envelope | 9.73E-04 |
| 22 | GO:0010287: plastoglobule | 1.10E-03 |
| 23 | GO:0055035: plastid thylakoid membrane | 1.23E-03 |
| 24 | GO:0010319: stromule | 1.47E-03 |
| 25 | GO:0009533: chloroplast stromal thylakoid | 2.12E-03 |
| 26 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.81E-03 |
| 27 | GO:0005811: lipid particle | 2.81E-03 |
| 28 | GO:0000312: plastid small ribosomal subunit | 5.68E-03 |
| 29 | GO:0030095: chloroplast photosystem II | 5.68E-03 |
| 30 | GO:0030076: light-harvesting complex | 6.14E-03 |
| 31 | GO:0043231: intracellular membrane-bounded organelle | 7.45E-03 |
| 32 | GO:0015935: small ribosomal subunit | 8.14E-03 |
| 33 | GO:0005871: kinesin complex | 1.03E-02 |
| 34 | GO:0009522: photosystem I | 1.21E-02 |
| 35 | GO:0009523: photosystem II | 1.27E-02 |
| 36 | GO:0009295: nucleoid | 1.60E-02 |
| 37 | GO:0009707: chloroplast outer membrane | 2.09E-02 |
| 38 | GO:0048046: apoplast | 2.09E-02 |
| 39 | GO:0005874: microtubule | 2.13E-02 |
| 40 | GO:0015934: large ribosomal subunit | 2.32E-02 |
| 41 | GO:0016020: membrane | 4.15E-02 |
| 42 | GO:0009536: plastid | 4.25E-02 |
| 43 | GO:0009706: chloroplast inner membrane | 4.71E-02 |