co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G16140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0015979: photosynthesis	9.08E-06
4	GO:0015995: chlorophyll biosynthetic process	3.05E-05
5	GO:0010480: microsporocyte differentiation	5.64E-05
6	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	5.64E-05
7	GO:0010541: acropetal auxin transport	1.37E-04
8	GO:0090391: granum assembly	2.34E-04
9	GO:0045493: xylan catabolic process	2.34E-04
10	GO:0010160: formation of animal organ boundary	2.34E-04
11	GO:0048443: stamen development	2.38E-04
12	GO:0042335: cuticle development	2.80E-04
13	GO:0010306: rhamnogalacturonan II biosynthetic process	3.41E-04
14	GO:0051513: regulation of monopolar cell growth	3.41E-04
15	GO:0080170: hydrogen peroxide transmembrane transport	3.41E-04
16	GO:0043481: anthocyanin accumulation in tissues in response to UV light	3.41E-04
17	GO:0030104: water homeostasis	4.56E-04
18	GO:0016123: xanthophyll biosynthetic process	5.78E-04
19	GO:0060918: auxin transport	7.07E-04
20	GO:0009772: photosynthetic electron transport in photosystem II	9.85E-04
21	GO:0048437: floral organ development	9.85E-04
22	GO:0010196: nonphotochemical quenching	9.85E-04
23	GO:0010206: photosystem II repair	1.45E-03
24	GO:0048589: developmental growth	1.45E-03
25	GO:0009245: lipid A biosynthetic process	1.45E-03
26	GO:0010205: photoinhibition	1.62E-03
27	GO:0019684: photosynthesis, light reaction	1.97E-03
28	GO:0048229: gametophyte development	1.97E-03
29	GO:0009773: photosynthetic electron transport in photosystem I	1.97E-03
30	GO:0010152: pollen maturation	2.16E-03
31	GO:0008361: regulation of cell size	2.16E-03
32	GO:0010075: regulation of meristem growth	2.36E-03
33	GO:0010540: basipetal auxin transport	2.56E-03
34	GO:0009934: regulation of meristem structural organization	2.56E-03
35	GO:0009735: response to cytokinin	2.72E-03
36	GO:0010030: positive regulation of seed germination	2.76E-03
37	GO:0045490: pectin catabolic process	3.55E-03
38	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.10E-03
39	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.58E-03
40	GO:0034220: ion transmembrane transport	4.83E-03
41	GO:0048653: anther development	4.83E-03
42	GO:0042631: cellular response to water deprivation	4.83E-03
43	GO:0009958: positive gravitropism	5.09E-03
44	GO:0048868: pollen tube development	5.09E-03
45	GO:0000302: response to reactive oxygen species	5.88E-03
46	GO:0009639: response to red or far red light	6.71E-03
47	GO:0009828: plant-type cell wall loosening	6.71E-03
48	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.01E-03
49	GO:0042742: defense response to bacterium	7.45E-03
50	GO:0010027: thylakoid membrane organization	7.59E-03
51	GO:0009627: systemic acquired resistance	8.19E-03
52	GO:0010411: xyloglucan metabolic process	8.50E-03
53	GO:0000160: phosphorelay signal transduction system	9.45E-03
54	GO:0010218: response to far red light	9.78E-03
55	GO:0048527: lateral root development	1.01E-02
56	GO:0016051: carbohydrate biosynthetic process	1.08E-02
57	GO:0009637: response to blue light	1.08E-02
58	GO:0008152: metabolic process	1.10E-02
59	GO:0034599: cellular response to oxidative stress	1.11E-02
60	GO:0009926: auxin polar transport	1.29E-02
61	GO:0009640: photomorphogenesis	1.29E-02
62	GO:0006855: drug transmembrane transport	1.44E-02
63	GO:0009664: plant-type cell wall organization	1.51E-02
64	GO:0009736: cytokinin-activated signaling pathway	1.59E-02
65	GO:0009624: response to nematode	2.04E-02
66	GO:0042744: hydrogen peroxide catabolic process	2.63E-02
67	GO:0006633: fatty acid biosynthetic process	2.82E-02
68	GO:0009739: response to gibberellin	3.27E-02
69	GO:0010468: regulation of gene expression	3.42E-02
70	GO:0071555: cell wall organization	3.61E-02
71	GO:0009826: unidimensional cell growth	4.01E-02
72	GO:0009733: response to auxin	4.04E-02
73	GO:0009860: pollen tube growth	4.34E-02
74	GO:0080167: response to karrikin	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0016851: magnesium chelatase activity	1.75E-06
6	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	5.64E-05
7	GO:0030570: pectate lyase activity	2.18E-04
8	GO:0016829: lyase activity	2.95E-04
9	GO:0009044: xylan 1,4-beta-xylosidase activity	4.56E-04
10	GO:0046556: alpha-L-arabinofuranosidase activity	4.56E-04
11	GO:0010011: auxin binding	4.56E-04
12	GO:0031177: phosphopantetheine binding	7.07E-04
13	GO:0004130: cytochrome-c peroxidase activity	7.07E-04
14	GO:0004017: adenylate kinase activity	8.44E-04
15	GO:0000035: acyl binding	8.44E-04
16	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.13E-03
17	GO:0015020: glucuronosyltransferase activity	1.79E-03
18	GO:0031072: heat shock protein binding	2.36E-03
19	GO:0010329: auxin efflux transmembrane transporter activity	2.36E-03
20	GO:0008266: poly(U) RNA binding	2.56E-03
21	GO:0005528: FK506 binding	3.18E-03
22	GO:0033612: receptor serine/threonine kinase binding	3.63E-03
23	GO:0004707: MAP kinase activity	3.63E-03
24	GO:0003756: protein disulfide isomerase activity	4.34E-03
25	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.50E-03
26	GO:0000156: phosphorelay response regulator activity	6.43E-03
27	GO:0015250: water channel activity	7.59E-03
28	GO:0008375: acetylglucosaminyltransferase activity	8.19E-03
29	GO:0008236: serine-type peptidase activity	8.81E-03
30	GO:0030145: manganese ion binding	1.01E-02
31	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.44E-02
32	GO:0003777: microtubule motor activity	1.71E-02
33	GO:0004650: polygalacturonase activity	1.92E-02
34	GO:0051082: unfolded protein binding	2.04E-02
35	GO:0019843: rRNA binding	2.40E-02
36	GO:0005515: protein binding	2.42E-02
37	GO:0004252: serine-type endopeptidase activity	2.58E-02
38	GO:0005516: calmodulin binding	2.68E-02
39	GO:0004601: peroxidase activity	4.12E-02
40	GO:0016788: hydrolase activity, acting on ester bonds	4.17E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009534: chloroplast thylakoid	9.26E-16
3	GO:0009535: chloroplast thylakoid membrane	3.96E-12
4	GO:0009507: chloroplast	1.07E-08
5	GO:0009570: chloroplast stroma	3.15E-08
6	GO:0009543: chloroplast thylakoid lumen	5.18E-07
7	GO:0009941: chloroplast envelope	7.06E-07
8	GO:0010007: magnesium chelatase complex	7.23E-07
9	GO:0030095: chloroplast photosystem II	1.42E-06
10	GO:0031977: thylakoid lumen	2.05E-06
11	GO:0009515: granal stacked thylakoid	5.64E-05
12	GO:0043674: columella	5.64E-05
13	GO:0009579: thylakoid	9.27E-05
14	GO:0030093: chloroplast photosystem I	1.37E-04
15	GO:0009523: photosystem II	3.49E-04
16	GO:0005618: cell wall	7.71E-04
17	GO:0042807: central vacuole	9.85E-04
18	GO:0009533: chloroplast stromal thylakoid	9.85E-04
19	GO:0009508: plastid chromosome	2.36E-03
20	GO:0009654: photosystem II oxygen evolving complex	3.40E-03
21	GO:0009522: photosystem I	5.35E-03
22	GO:0019898: extrinsic component of membrane	5.61E-03
23	GO:0009295: nucleoid	7.00E-03
24	GO:0009505: plant-type cell wall	9.93E-03
25	GO:0005576: extracellular region	1.11E-02
26	GO:0009706: chloroplast inner membrane	2.04E-02
27	GO:0031225: anchored component of membrane	2.78E-02
28	GO:0009705: plant-type vacuole membrane	3.02E-02
29	GO:0048046: apoplast	3.79E-02
30	GO:0031969: chloroplast membrane	4.80E-02
31	GO:0016020: membrane	4.88E-02