Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G15850

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000505: regulation of energy homeostasis0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
4GO:0090071: negative regulation of ribosome biogenesis0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
9GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
10GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
11GO:0042371: vitamin K biosynthetic process0.00E+00
12GO:0015739: sialic acid transport0.00E+00
13GO:0015979: photosynthesis2.73E-11
14GO:0032544: plastid translation5.77E-11
15GO:0042254: ribosome biogenesis7.78E-10
16GO:0009773: photosynthetic electron transport in photosystem I6.05E-08
17GO:0006412: translation2.67E-07
18GO:1902326: positive regulation of chlorophyll biosynthetic process9.99E-06
19GO:0010027: thylakoid membrane organization1.61E-05
20GO:0018298: protein-chromophore linkage3.07E-05
21GO:0010206: photosystem II repair4.75E-05
22GO:0010207: photosystem II assembly1.80E-04
23GO:0031365: N-terminal protein amino acid modification1.96E-04
24GO:0016120: carotene biosynthetic process1.96E-04
25GO:0010236: plastoquinone biosynthetic process1.96E-04
26GO:0055114: oxidation-reduction process3.22E-04
27GO:0009735: response to cytokinin3.71E-04
28GO:0042372: phylloquinone biosynthetic process3.72E-04
29GO:1902458: positive regulation of stomatal opening4.76E-04
30GO:0034337: RNA folding4.76E-04
31GO:0071588: hydrogen peroxide mediated signaling pathway4.76E-04
32GO:0060627: regulation of vesicle-mediated transport4.76E-04
33GO:0051180: vitamin transport4.76E-04
34GO:0030974: thiamine pyrophosphate transport4.76E-04
35GO:0043489: RNA stabilization4.76E-04
36GO:0071277: cellular response to calcium ion4.76E-04
37GO:0000481: maturation of 5S rRNA4.76E-04
38GO:0043686: co-translational protein modification4.76E-04
39GO:0010196: nonphotochemical quenching4.78E-04
40GO:0009658: chloroplast organization4.87E-04
41GO:0008610: lipid biosynthetic process5.96E-04
42GO:0006729: tetrahydrobiopterin biosynthetic process1.02E-03
43GO:1903426: regulation of reactive oxygen species biosynthetic process1.02E-03
44GO:0030388: fructose 1,6-bisphosphate metabolic process1.02E-03
45GO:0010275: NAD(P)H dehydrogenase complex assembly1.02E-03
46GO:0080005: photosystem stoichiometry adjustment1.02E-03
47GO:0010115: regulation of abscisic acid biosynthetic process1.02E-03
48GO:0015893: drug transport1.02E-03
49GO:0034755: iron ion transmembrane transport1.02E-03
50GO:0006954: inflammatory response1.67E-03
51GO:0090391: granum assembly1.67E-03
52GO:0006000: fructose metabolic process1.67E-03
53GO:0006518: peptide metabolic process1.67E-03
54GO:0006094: gluconeogenesis1.79E-03
55GO:0006006: glucose metabolic process1.79E-03
56GO:0015995: chlorophyll biosynthetic process1.81E-03
57GO:0009409: response to cold1.91E-03
58GO:0019253: reductive pentose-phosphate cycle2.02E-03
59GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.42E-03
60GO:0006166: purine ribonucleoside salvage2.42E-03
61GO:0071484: cellular response to light intensity2.42E-03
62GO:0009152: purine ribonucleotide biosynthetic process2.42E-03
63GO:0046653: tetrahydrofolate metabolic process2.42E-03
64GO:0080170: hydrogen peroxide transmembrane transport2.42E-03
65GO:0006424: glutamyl-tRNA aminoacylation2.42E-03
66GO:1901332: negative regulation of lateral root development2.42E-03
67GO:0006168: adenine salvage2.42E-03
68GO:0055070: copper ion homeostasis2.42E-03
69GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.42E-03
70GO:0006833: water transport2.52E-03
71GO:0006636: unsaturated fatty acid biosynthetic process2.52E-03
72GO:0055085: transmembrane transport2.63E-03
73GO:0009768: photosynthesis, light harvesting in photosystem I3.09E-03
74GO:0006808: regulation of nitrogen utilization3.26E-03
75GO:0015976: carbon utilization3.26E-03
76GO:0009765: photosynthesis, light harvesting3.26E-03
77GO:2000122: negative regulation of stomatal complex development3.26E-03
78GO:0045727: positive regulation of translation3.26E-03
79GO:0010037: response to carbon dioxide3.26E-03
80GO:0006633: fatty acid biosynthetic process3.61E-03
81GO:0035434: copper ion transmembrane transport4.18E-03
82GO:0006461: protein complex assembly4.18E-03
83GO:0044209: AMP salvage4.18E-03
84GO:0032543: mitochondrial translation4.18E-03
85GO:0006564: L-serine biosynthetic process4.18E-03
86GO:0045038: protein import into chloroplast thylakoid membrane4.18E-03
87GO:0009306: protein secretion4.42E-03
88GO:0048759: xylem vessel member cell differentiation5.18E-03
89GO:0010405: arabinogalactan protein metabolic process5.18E-03
90GO:0042549: photosystem II stabilization5.18E-03
91GO:0009913: epidermal cell differentiation5.18E-03
92GO:0006655: phosphatidylglycerol biosynthetic process5.18E-03
93GO:0010190: cytochrome b6f complex assembly5.18E-03
94GO:0006086: acetyl-CoA biosynthetic process from pyruvate5.18E-03
95GO:0006596: polyamine biosynthetic process5.18E-03
96GO:0032973: amino acid export5.18E-03
97GO:0042335: cuticle development5.18E-03
98GO:0018258: protein O-linked glycosylation via hydroxyproline5.18E-03
99GO:0035435: phosphate ion transmembrane transport5.18E-03
100GO:0034220: ion transmembrane transport5.18E-03
101GO:0000413: protein peptidyl-prolyl isomerization5.18E-03
102GO:0006561: proline biosynthetic process5.18E-03
103GO:0010182: sugar mediated signaling pathway5.59E-03
104GO:0006364: rRNA processing5.66E-03
105GO:0010019: chloroplast-nucleus signaling pathway6.24E-03
106GO:0009955: adaxial/abaxial pattern specification6.24E-03
107GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.24E-03
108GO:0017148: negative regulation of translation6.24E-03
109GO:1901259: chloroplast rRNA processing6.24E-03
110GO:0010189: vitamin E biosynthetic process6.24E-03
111GO:0009854: oxidative photosynthetic carbon pathway6.24E-03
112GO:0006810: transport6.33E-03
113GO:0006096: glycolytic process7.02E-03
114GO:0006401: RNA catabolic process7.39E-03
115GO:0009395: phospholipid catabolic process7.39E-03
116GO:0009772: photosynthetic electron transport in photosystem II7.39E-03
117GO:0043090: amino acid import7.39E-03
118GO:1900057: positive regulation of leaf senescence7.39E-03
119GO:0009645: response to low light intensity stimulus7.39E-03
120GO:0010444: guard mother cell differentiation7.39E-03
121GO:0006400: tRNA modification7.39E-03
122GO:0009231: riboflavin biosynthetic process8.60E-03
123GO:0048564: photosystem I assembly8.60E-03
124GO:0030091: protein repair8.60E-03
125GO:0009642: response to light intensity8.60E-03
126GO:0006605: protein targeting8.60E-03
127GO:0009704: de-etiolation8.60E-03
128GO:0032508: DNA duplex unwinding8.60E-03
129GO:2000070: regulation of response to water deprivation8.60E-03
130GO:0045010: actin nucleation8.60E-03
131GO:0017004: cytochrome complex assembly9.88E-03
132GO:0006002: fructose 6-phosphate metabolic process9.88E-03
133GO:0015996: chlorophyll catabolic process9.88E-03
134GO:0007186: G-protein coupled receptor signaling pathway9.88E-03
135GO:0009657: plastid organization9.88E-03
136GO:0006526: arginine biosynthetic process9.88E-03
137GO:0016126: sterol biosynthetic process1.00E-02
138GO:0015780: nucleotide-sugar transport1.12E-02
139GO:0009051: pentose-phosphate shunt, oxidative branch1.12E-02
140GO:0090305: nucleic acid phosphodiester bond hydrolysis1.12E-02
141GO:0080144: amino acid homeostasis1.12E-02
142GO:0006098: pentose-phosphate shunt1.12E-02
143GO:0090333: regulation of stomatal closure1.12E-02
144GO:0010205: photoinhibition1.26E-02
145GO:0009638: phototropism1.26E-02
146GO:0009688: abscisic acid biosynthetic process1.41E-02
147GO:0043069: negative regulation of programmed cell death1.41E-02
148GO:0009631: cold acclimation1.52E-02
149GO:0000038: very long-chain fatty acid metabolic process1.56E-02
150GO:0019684: photosynthesis, light reaction1.56E-02
151GO:0009089: lysine biosynthetic process via diaminopimelate1.56E-02
152GO:0043085: positive regulation of catalytic activity1.56E-02
153GO:0006879: cellular iron ion homeostasis1.56E-02
154GO:0006415: translational termination1.56E-02
155GO:0009750: response to fructose1.56E-02
156GO:0018119: peptidyl-cysteine S-nitrosylation1.56E-02
157GO:0009853: photorespiration1.67E-02
158GO:0016024: CDP-diacylglycerol biosynthetic process1.72E-02
159GO:0045037: protein import into chloroplast stroma1.72E-02
160GO:0034599: cellular response to oxidative stress1.75E-02
161GO:0030036: actin cytoskeleton organization1.88E-02
162GO:0009718: anthocyanin-containing compound biosynthetic process1.88E-02
163GO:0009725: response to hormone1.88E-02
164GO:0009767: photosynthetic electron transport chain1.88E-02
165GO:0005986: sucrose biosynthetic process1.88E-02
166GO:0010628: positive regulation of gene expression1.88E-02
167GO:0005985: sucrose metabolic process2.23E-02
168GO:0009644: response to high light intensity2.33E-02
169GO:0008643: carbohydrate transport2.33E-02
170GO:0000027: ribosomal large subunit assembly2.59E-02
171GO:0042538: hyperosmotic salinity response2.71E-02
172GO:0007017: microtubule-based process2.78E-02
173GO:0009826: unidimensional cell growth2.95E-02
174GO:0061077: chaperone-mediated protein folding2.97E-02
175GO:0006817: phosphate ion transport3.58E-02
176GO:0042127: regulation of cell proliferation3.58E-02
177GO:0016117: carotenoid biosynthetic process3.79E-02
178GO:0010087: phloem or xylem histogenesis4.01E-02
179GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.21E-02
180GO:0006520: cellular amino acid metabolic process4.23E-02
181GO:0006662: glycerol ether metabolic process4.23E-02
182GO:0009416: response to light stimulus4.68E-02
183GO:0016132: brassinosteroid biosynthetic process4.91E-02
184GO:0071554: cell wall organization or biogenesis4.91E-02
185GO:0000302: response to reactive oxygen species4.91E-02
186GO:0009414: response to water deprivation4.95E-02
RankGO TermAdjusted P value
1GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
2GO:0045436: lycopene beta cyclase activity0.00E+00
3GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity0.00E+00
4GO:0008859: exoribonuclease II activity0.00E+00
5GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
6GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
7GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
8GO:0008887: glycerate kinase activity0.00E+00
9GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
10GO:0010301: xanthoxin dehydrogenase activity0.00E+00
11GO:0015136: sialic acid transmembrane transporter activity0.00E+00
12GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
13GO:0010487: thermospermine synthase activity0.00E+00
14GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
15GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
16GO:0019843: rRNA binding7.62E-12
17GO:0003735: structural constituent of ribosome2.52E-08
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.46E-08
19GO:0005528: FK506 binding5.14E-07
20GO:0016168: chlorophyll binding1.85E-05
21GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor3.40E-05
22GO:0043023: ribosomal large subunit binding7.31E-05
23GO:0043495: protein anchor1.27E-04
24GO:0022891: substrate-specific transmembrane transporter activity4.71E-04
25GO:0000248: C-5 sterol desaturase activity4.76E-04
26GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity4.76E-04
27GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.76E-04
28GO:0090422: thiamine pyrophosphate transporter activity4.76E-04
29GO:0080132: fatty acid alpha-hydroxylase activity4.76E-04
30GO:0005080: protein kinase C binding4.76E-04
31GO:0016768: spermine synthase activity4.76E-04
32GO:0042586: peptide deformylase activity4.76E-04
33GO:0045485: omega-6 fatty acid desaturase activity4.76E-04
34GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.76E-04
35GO:0004328: formamidase activity4.76E-04
36GO:0019899: enzyme binding4.78E-04
37GO:0016491: oxidoreductase activity6.31E-04
38GO:0042389: omega-3 fatty acid desaturase activity1.02E-03
39GO:0004617: phosphoglycerate dehydrogenase activity1.02E-03
40GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity1.02E-03
41GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.02E-03
42GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.02E-03
43GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.02E-03
44GO:0008967: phosphoglycolate phosphatase activity1.02E-03
45GO:0008864: formyltetrahydrofolate deformylase activity1.67E-03
46GO:0016531: copper chaperone activity1.67E-03
47GO:0019829: cation-transporting ATPase activity1.67E-03
48GO:0017150: tRNA dihydrouridine synthase activity1.67E-03
49GO:0003935: GTP cyclohydrolase II activity1.67E-03
50GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.67E-03
51GO:0004022: alcohol dehydrogenase (NAD) activity1.79E-03
52GO:0008266: poly(U) RNA binding2.02E-03
53GO:0008097: 5S rRNA binding2.42E-03
54GO:0001872: (1->3)-beta-D-glucan binding2.42E-03
55GO:0003999: adenine phosphoribosyltransferase activity2.42E-03
56GO:0016149: translation release factor activity, codon specific2.42E-03
57GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.42E-03
58GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.42E-03
59GO:0016851: magnesium chelatase activity2.42E-03
60GO:0031409: pigment binding2.52E-03
61GO:0004659: prenyltransferase activity3.26E-03
62GO:0004345: glucose-6-phosphate dehydrogenase activity3.26E-03
63GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.26E-03
64GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity3.26E-03
65GO:0052793: pectin acetylesterase activity3.26E-03
66GO:0004506: squalene monooxygenase activity3.26E-03
67GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.26E-03
68GO:0004040: amidase activity4.18E-03
69GO:0051287: NAD binding4.94E-03
70GO:1990714: hydroxyproline O-galactosyltransferase activity5.18E-03
71GO:0004332: fructose-bisphosphate aldolase activity5.18E-03
72GO:0016208: AMP binding5.18E-03
73GO:0004130: cytochrome-c peroxidase activity5.18E-03
74GO:0016688: L-ascorbate peroxidase activity5.18E-03
75GO:0016787: hydrolase activity6.17E-03
76GO:0004017: adenylate kinase activity6.24E-03
77GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.24E-03
78GO:0005338: nucleotide-sugar transmembrane transporter activity7.39E-03
79GO:0008235: metalloexopeptidase activity7.39E-03
80GO:0004620: phospholipase activity7.39E-03
81GO:0016788: hydrolase activity, acting on ester bonds8.35E-03
82GO:0043022: ribosome binding8.60E-03
83GO:0004033: aldo-keto reductase (NADP) activity8.60E-03
84GO:0005215: transporter activity9.01E-03
85GO:0005375: copper ion transmembrane transporter activity9.88E-03
86GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.88E-03
87GO:0015250: water channel activity1.00E-02
88GO:0003747: translation release factor activity1.12E-02
89GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors1.12E-02
90GO:0008236: serine-type peptidase activity1.25E-02
91GO:0005381: iron ion transmembrane transporter activity1.26E-02
92GO:0052689: carboxylic ester hydrolase activity1.31E-02
93GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.31E-02
94GO:0008047: enzyme activator activity1.41E-02
95GO:0004177: aminopeptidase activity1.56E-02
96GO:0015386: potassium:proton antiporter activity1.56E-02
97GO:0005509: calcium ion binding1.71E-02
98GO:0003993: acid phosphatase activity1.75E-02
99GO:0004089: carbonate dehydratase activity1.88E-02
100GO:0031072: heat shock protein binding1.88E-02
101GO:0015114: phosphate ion transmembrane transporter activity1.88E-02
102GO:0000175: 3'-5'-exoribonuclease activity1.88E-02
103GO:0004565: beta-galactosidase activity1.88E-02
104GO:0008081: phosphoric diester hydrolase activity1.88E-02
105GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.88E-02
106GO:0005315: inorganic phosphate transmembrane transporter activity1.88E-02
107GO:0050661: NADP binding1.90E-02
108GO:0008146: sulfotransferase activity2.23E-02
109GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.41E-02
110GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.41E-02
111GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.41E-02
112GO:0015293: symporter activity2.42E-02
113GO:0042802: identical protein binding2.42E-02
114GO:0043424: protein histidine kinase binding2.78E-02
115GO:0015079: potassium ion transmembrane transporter activity2.78E-02
116GO:0004540: ribonuclease activity2.97E-02
117GO:0004176: ATP-dependent peptidase activity2.97E-02
118GO:0008514: organic anion transmembrane transporter activity3.58E-02
119GO:0047134: protein-disulfide reductase activity3.79E-02
120GO:0003729: mRNA binding4.16E-02
121GO:0008080: N-acetyltransferase activity4.23E-02
122GO:0016746: transferase activity, transferring acyl groups4.25E-02
123GO:0004791: thioredoxin-disulfide reductase activity4.45E-02
124GO:0050662: coenzyme binding4.45E-02
125GO:0004872: receptor activity4.68E-02
126GO:0048038: quinone binding4.91E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009507: chloroplast5.52E-74
4GO:0009535: chloroplast thylakoid membrane1.05E-38
5GO:0009570: chloroplast stroma2.85E-36
6GO:0009941: chloroplast envelope9.64E-32
7GO:0009579: thylakoid1.06E-25
8GO:0009543: chloroplast thylakoid lumen1.77E-25
9GO:0031977: thylakoid lumen3.66E-21
10GO:0009534: chloroplast thylakoid6.14E-17
11GO:0005840: ribosome1.53E-09
12GO:0009654: photosystem II oxygen evolving complex1.56E-08
13GO:0019898: extrinsic component of membrane1.92E-07
14GO:0030095: chloroplast photosystem II1.96E-07
15GO:0031969: chloroplast membrane3.55E-06
16GO:0009533: chloroplast stromal thylakoid1.67E-05
17GO:0042651: thylakoid membrane2.07E-05
18GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.75E-05
19GO:0016021: integral component of membrane5.37E-05
20GO:0009523: photosystem II8.96E-05
21GO:0009706: chloroplast inner membrane3.50E-04
22GO:0009782: photosystem I antenna complex4.76E-04
23GO:0009515: granal stacked thylakoid4.76E-04
24GO:0042170: plastid membrane1.02E-03
25GO:0009528: plastid inner membrane1.67E-03
26GO:0010007: magnesium chelatase complex1.67E-03
27GO:0030076: light-harvesting complex2.26E-03
28GO:0015934: large ribosomal subunit2.49E-03
29GO:0016020: membrane3.13E-03
30GO:0009527: plastid outer membrane3.26E-03
31GO:0015935: small ribosomal subunit3.40E-03
32GO:0000178: exosome (RNase complex)4.18E-03
33GO:0031209: SCAR complex5.18E-03
34GO:0046658: anchored component of plasma membrane6.40E-03
35GO:0010319: stromule8.92E-03
36GO:0010287: plastoglobule1.11E-02
37GO:0005763: mitochondrial small ribosomal subunit1.12E-02
38GO:0009536: plastid1.12E-02
39GO:0008180: COP9 signalosome1.12E-02
40GO:0045298: tubulin complex1.12E-02
41GO:0032040: small-subunit processome1.72E-02
42GO:0000312: plastid small ribosomal subunit2.05E-02
43GO:0009532: plastid stroma2.97E-02
44GO:0031225: anchored component of membrane3.36E-02
45GO:0009522: photosystem I4.45E-02
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Gene type



Gene DE type