GO Enrichment Analysis of Co-expressed Genes with
AT3G13910
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 2 | GO:0042430: indole-containing compound metabolic process | 0.00E+00 |
| 3 | GO:0045747: positive regulation of Notch signaling pathway | 0.00E+00 |
| 4 | GO:0030149: sphingolipid catabolic process | 0.00E+00 |
| 5 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 6 | GO:0046686: response to cadmium ion | 3.27E-12 |
| 7 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 8.68E-05 |
| 8 | GO:1990022: RNA polymerase III complex localization to nucleus | 1.31E-04 |
| 9 | GO:0044376: RNA polymerase II complex import to nucleus | 1.31E-04 |
| 10 | GO:0048448: stamen morphogenesis | 1.31E-04 |
| 11 | GO:0010450: inflorescence meristem growth | 1.31E-04 |
| 12 | GO:0006189: 'de novo' IMP biosynthetic process | 1.34E-04 |
| 13 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.03E-04 |
| 14 | GO:0019752: carboxylic acid metabolic process | 3.03E-04 |
| 15 | GO:0031648: protein destabilization | 3.03E-04 |
| 16 | GO:0071395: cellular response to jasmonic acid stimulus | 3.03E-04 |
| 17 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 3.03E-04 |
| 18 | GO:0048833: specification of floral organ number | 3.03E-04 |
| 19 | GO:0010167: response to nitrate | 3.75E-04 |
| 20 | GO:0009410: response to xenobiotic stimulus | 4.99E-04 |
| 21 | GO:0045039: protein import into mitochondrial inner membrane | 4.99E-04 |
| 22 | GO:0009814: defense response, incompatible interaction | 6.13E-04 |
| 23 | GO:0006164: purine nucleotide biosynthetic process | 7.14E-04 |
| 24 | GO:0009113: purine nucleobase biosynthetic process | 7.14E-04 |
| 25 | GO:0001676: long-chain fatty acid metabolic process | 7.14E-04 |
| 26 | GO:0006621: protein retention in ER lumen | 9.47E-04 |
| 27 | GO:0006221: pyrimidine nucleotide biosynthetic process | 9.47E-04 |
| 28 | GO:0000956: nuclear-transcribed mRNA catabolic process | 9.47E-04 |
| 29 | GO:0000460: maturation of 5.8S rRNA | 9.47E-04 |
| 30 | GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA | 9.47E-04 |
| 31 | GO:0010188: response to microbial phytotoxin | 9.47E-04 |
| 32 | GO:0006511: ubiquitin-dependent protein catabolic process | 1.02E-03 |
| 33 | GO:0006564: L-serine biosynthetic process | 1.20E-03 |
| 34 | GO:0030163: protein catabolic process | 1.25E-03 |
| 35 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.47E-03 |
| 36 | GO:0010405: arabinogalactan protein metabolic process | 1.47E-03 |
| 37 | GO:0000470: maturation of LSU-rRNA | 1.47E-03 |
| 38 | GO:0043248: proteasome assembly | 1.47E-03 |
| 39 | GO:0071446: cellular response to salicylic acid stimulus | 2.06E-03 |
| 40 | GO:1900056: negative regulation of leaf senescence | 2.06E-03 |
| 41 | GO:0006979: response to oxidative stress | 2.09E-03 |
| 42 | GO:0009699: phenylpropanoid biosynthetic process | 2.73E-03 |
| 43 | GO:0009880: embryonic pattern specification | 2.73E-03 |
| 44 | GO:0006098: pentose-phosphate shunt | 3.08E-03 |
| 45 | GO:0009056: catabolic process | 3.08E-03 |
| 46 | GO:0046685: response to arsenic-containing substance | 3.08E-03 |
| 47 | GO:0009051: pentose-phosphate shunt, oxidative branch | 3.08E-03 |
| 48 | GO:0015031: protein transport | 3.14E-03 |
| 49 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 3.46E-03 |
| 50 | GO:0030042: actin filament depolymerization | 3.46E-03 |
| 51 | GO:0055114: oxidation-reduction process | 3.60E-03 |
| 52 | GO:0016192: vesicle-mediated transport | 4.06E-03 |
| 53 | GO:0006457: protein folding | 4.19E-03 |
| 54 | GO:0015706: nitrate transport | 4.65E-03 |
| 55 | GO:0071365: cellular response to auxin stimulus | 4.65E-03 |
| 56 | GO:0045454: cell redox homeostasis | 4.78E-03 |
| 57 | GO:0006626: protein targeting to mitochondrion | 5.08E-03 |
| 58 | GO:0006006: glucose metabolic process | 5.08E-03 |
| 59 | GO:0006094: gluconeogenesis | 5.08E-03 |
| 60 | GO:0006096: glycolytic process | 5.28E-03 |
| 61 | GO:0009887: animal organ morphogenesis | 5.52E-03 |
| 62 | GO:0046688: response to copper ion | 5.97E-03 |
| 63 | GO:0009553: embryo sac development | 6.16E-03 |
| 64 | GO:0034976: response to endoplasmic reticulum stress | 6.43E-03 |
| 65 | GO:0000027: ribosomal large subunit assembly | 6.91E-03 |
| 66 | GO:0009863: salicylic acid mediated signaling pathway | 6.91E-03 |
| 67 | GO:0008152: metabolic process | 7.07E-03 |
| 68 | GO:0006825: copper ion transport | 7.40E-03 |
| 69 | GO:0009737: response to abscisic acid | 7.73E-03 |
| 70 | GO:0031348: negative regulation of defense response | 8.42E-03 |
| 71 | GO:0009625: response to insect | 8.95E-03 |
| 72 | GO:0009790: embryo development | 9.28E-03 |
| 73 | GO:0019722: calcium-mediated signaling | 9.49E-03 |
| 74 | GO:0034220: ion transmembrane transport | 1.06E-02 |
| 75 | GO:0042631: cellular response to water deprivation | 1.06E-02 |
| 76 | GO:0006520: cellular amino acid metabolic process | 1.12E-02 |
| 77 | GO:0006662: glycerol ether metabolic process | 1.12E-02 |
| 78 | GO:0048868: pollen tube development | 1.12E-02 |
| 79 | GO:0009646: response to absence of light | 1.18E-02 |
| 80 | GO:0009555: pollen development | 1.29E-02 |
| 81 | GO:0010193: response to ozone | 1.30E-02 |
| 82 | GO:0000302: response to reactive oxygen species | 1.30E-02 |
| 83 | GO:0009617: response to bacterium | 1.31E-02 |
| 84 | GO:0032502: developmental process | 1.36E-02 |
| 85 | GO:0007264: small GTPase mediated signal transduction | 1.36E-02 |
| 86 | GO:0009567: double fertilization forming a zygote and endosperm | 1.49E-02 |
| 87 | GO:0010286: heat acclimation | 1.55E-02 |
| 88 | GO:0009816: defense response to bacterium, incompatible interaction | 1.75E-02 |
| 89 | GO:0042128: nitrate assimilation | 1.82E-02 |
| 90 | GO:0007049: cell cycle | 1.91E-02 |
| 91 | GO:0046777: protein autophosphorylation | 2.26E-02 |
| 92 | GO:0044550: secondary metabolite biosynthetic process | 2.30E-02 |
| 93 | GO:0045087: innate immune response | 2.41E-02 |
| 94 | GO:0034599: cellular response to oxidative stress | 2.48E-02 |
| 95 | GO:0006099: tricarboxylic acid cycle | 2.48E-02 |
| 96 | GO:0006886: intracellular protein transport | 2.62E-02 |
| 97 | GO:0006468: protein phosphorylation | 2.70E-02 |
| 98 | GO:0006631: fatty acid metabolic process | 2.72E-02 |
| 99 | GO:0008283: cell proliferation | 2.88E-02 |
| 100 | GO:0009408: response to heat | 3.12E-02 |
| 101 | GO:0009965: leaf morphogenesis | 3.13E-02 |
| 102 | GO:0009846: pollen germination | 3.39E-02 |
| 103 | GO:0006486: protein glycosylation | 3.56E-02 |
| 104 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.65E-02 |
| 105 | GO:0009909: regulation of flower development | 3.83E-02 |
| 106 | GO:0018105: peptidyl-serine phosphorylation | 4.67E-02 |
| 107 | GO:0006396: RNA processing | 4.67E-02 |
| 108 | GO:0009651: response to salt stress | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004637: phosphoribosylamine-glycine ligase activity | 0.00E+00 |
| 2 | GO:0005046: KDEL sequence binding | 0.00E+00 |
| 3 | GO:0050269: coniferyl-aldehyde dehydrogenase activity | 0.00E+00 |
| 4 | GO:0008117: sphinganine-1-phosphate aldolase activity | 0.00E+00 |
| 5 | GO:0051670: inulinase activity | 0.00E+00 |
| 6 | GO:0004656: procollagen-proline 4-dioxygenase activity | 4.98E-05 |
| 7 | GO:0008320: protein transmembrane transporter activity | 6.70E-05 |
| 8 | GO:0051669: fructan beta-fructosidase activity | 1.31E-04 |
| 9 | GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity | 1.31E-04 |
| 10 | GO:0048037: cofactor binding | 1.31E-04 |
| 11 | GO:0031219: levanase activity | 1.31E-04 |
| 12 | GO:0004638: phosphoribosylaminoimidazole carboxylase activity | 1.31E-04 |
| 13 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 3.03E-04 |
| 14 | GO:0001671: ATPase activator activity | 3.03E-04 |
| 15 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 3.03E-04 |
| 16 | GO:0004634: phosphopyruvate hydratase activity | 3.03E-04 |
| 17 | GO:0010296: prenylcysteine methylesterase activity | 3.03E-04 |
| 18 | GO:0004617: phosphoglycerate dehydrogenase activity | 3.03E-04 |
| 19 | GO:0043021: ribonucleoprotein complex binding | 3.03E-04 |
| 20 | GO:0031418: L-ascorbic acid binding | 4.64E-04 |
| 21 | GO:0004557: alpha-galactosidase activity | 4.99E-04 |
| 22 | GO:0052692: raffinose alpha-galactosidase activity | 4.99E-04 |
| 23 | GO:0005093: Rab GDP-dissociation inhibitor activity | 4.99E-04 |
| 24 | GO:0016531: copper chaperone activity | 4.99E-04 |
| 25 | GO:0004298: threonine-type endopeptidase activity | 5.61E-04 |
| 26 | GO:0000166: nucleotide binding | 6.01E-04 |
| 27 | GO:0051082: unfolded protein binding | 8.48E-04 |
| 28 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 9.47E-04 |
| 29 | GO:0046923: ER retention sequence binding | 9.47E-04 |
| 30 | GO:0016758: transferase activity, transferring hexosyl groups | 1.08E-03 |
| 31 | GO:0004029: aldehyde dehydrogenase (NAD) activity | 1.47E-03 |
| 32 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 1.47E-03 |
| 33 | GO:0030976: thiamine pyrophosphate binding | 1.47E-03 |
| 34 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.47E-03 |
| 35 | GO:0004332: fructose-bisphosphate aldolase activity | 1.47E-03 |
| 36 | GO:0102391: decanoate--CoA ligase activity | 1.76E-03 |
| 37 | GO:0008194: UDP-glycosyltransferase activity | 1.92E-03 |
| 38 | GO:0004467: long-chain fatty acid-CoA ligase activity | 2.06E-03 |
| 39 | GO:0016831: carboxy-lyase activity | 2.06E-03 |
| 40 | GO:0008121: ubiquinol-cytochrome-c reductase activity | 2.06E-03 |
| 41 | GO:0005524: ATP binding | 2.19E-03 |
| 42 | GO:0050897: cobalt ion binding | 2.37E-03 |
| 43 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.59E-03 |
| 44 | GO:0003746: translation elongation factor activity | 2.59E-03 |
| 45 | GO:0008135: translation factor activity, RNA binding | 2.73E-03 |
| 46 | GO:0015112: nitrate transmembrane transporter activity | 3.46E-03 |
| 47 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 3.46E-03 |
| 48 | GO:0008233: peptidase activity | 3.73E-03 |
| 49 | GO:0008794: arsenate reductase (glutaredoxin) activity | 4.24E-03 |
| 50 | GO:0008378: galactosyltransferase activity | 4.65E-03 |
| 51 | GO:0031072: heat shock protein binding | 5.08E-03 |
| 52 | GO:0008083: growth factor activity | 5.52E-03 |
| 53 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 5.80E-03 |
| 54 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 5.80E-03 |
| 55 | GO:0003712: transcription cofactor activity | 5.97E-03 |
| 56 | GO:0015035: protein disulfide oxidoreductase activity | 6.54E-03 |
| 57 | GO:0051087: chaperone binding | 7.40E-03 |
| 58 | GO:0035251: UDP-glucosyltransferase activity | 7.91E-03 |
| 59 | GO:0005506: iron ion binding | 8.07E-03 |
| 60 | GO:0003756: protein disulfide isomerase activity | 9.49E-03 |
| 61 | GO:0047134: protein-disulfide reductase activity | 1.00E-02 |
| 62 | GO:0004527: exonuclease activity | 1.12E-02 |
| 63 | GO:0004674: protein serine/threonine kinase activity | 1.14E-02 |
| 64 | GO:0004791: thioredoxin-disulfide reductase activity | 1.18E-02 |
| 65 | GO:0016853: isomerase activity | 1.18E-02 |
| 66 | GO:0004872: receptor activity | 1.24E-02 |
| 67 | GO:0042802: identical protein binding | 1.40E-02 |
| 68 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.42E-02 |
| 69 | GO:0016597: amino acid binding | 1.62E-02 |
| 70 | GO:0015250: water channel activity | 1.68E-02 |
| 71 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 1.82E-02 |
| 72 | GO:0004683: calmodulin-dependent protein kinase activity | 1.89E-02 |
| 73 | GO:0005507: copper ion binding | 2.02E-02 |
| 74 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.03E-02 |
| 75 | GO:0005096: GTPase activator activity | 2.11E-02 |
| 76 | GO:0004222: metalloendopeptidase activity | 2.18E-02 |
| 77 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.56E-02 |
| 78 | GO:0050661: NADP binding | 2.64E-02 |
| 79 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 2.74E-02 |
| 80 | GO:0005509: calcium ion binding | 2.84E-02 |
| 81 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.05E-02 |
| 82 | GO:0003924: GTPase activity | 3.12E-02 |
| 83 | GO:0005198: structural molecule activity | 3.13E-02 |
| 84 | GO:0051287: NAD binding | 3.30E-02 |
| 85 | GO:0016298: lipase activity | 3.65E-02 |
| 86 | GO:0008234: cysteine-type peptidase activity | 3.83E-02 |
| 87 | GO:0003779: actin binding | 4.48E-02 |
| 88 | GO:0016887: ATPase activity | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 2 | GO:0005801: cis-Golgi network | 4.98E-05 |
| 3 | GO:0005789: endoplasmic reticulum membrane | 5.63E-05 |
| 4 | GO:0005829: cytosol | 8.60E-05 |
| 5 | GO:0031012: extracellular matrix | 2.95E-04 |
| 6 | GO:0070545: PeBoW complex | 3.03E-04 |
| 7 | GO:0000015: phosphopyruvate hydratase complex | 3.03E-04 |
| 8 | GO:0030134: ER to Golgi transport vesicle | 3.03E-04 |
| 9 | GO:0030089: phycobilisome | 3.03E-04 |
| 10 | GO:0005783: endoplasmic reticulum | 3.20E-04 |
| 11 | GO:0005758: mitochondrial intermembrane space | 4.64E-04 |
| 12 | GO:0000502: proteasome complex | 5.46E-04 |
| 13 | GO:0005839: proteasome core complex | 5.61E-04 |
| 14 | GO:1990726: Lsm1-7-Pat1 complex | 7.14E-04 |
| 15 | GO:0005759: mitochondrial matrix | 1.48E-03 |
| 16 | GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane | 2.06E-03 |
| 17 | GO:0030687: preribosome, large subunit precursor | 2.06E-03 |
| 18 | GO:0005688: U6 snRNP | 2.39E-03 |
| 19 | GO:0019773: proteasome core complex, alpha-subunit complex | 2.73E-03 |
| 20 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 2.73E-03 |
| 21 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.26E-03 |
| 22 | GO:0005740: mitochondrial envelope | 3.84E-03 |
| 23 | GO:0005852: eukaryotic translation initiation factor 3 complex | 4.24E-03 |
| 24 | GO:0008541: proteasome regulatory particle, lid subcomplex | 4.24E-03 |
| 25 | GO:0005794: Golgi apparatus | 4.43E-03 |
| 26 | GO:0005750: mitochondrial respiratory chain complex III | 5.52E-03 |
| 27 | GO:0048046: apoplast | 6.35E-03 |
| 28 | GO:0005737: cytoplasm | 6.63E-03 |
| 29 | GO:0005618: cell wall | 7.51E-03 |
| 30 | GO:0005741: mitochondrial outer membrane | 7.91E-03 |
| 31 | GO:0015629: actin cytoskeleton | 8.95E-03 |
| 32 | GO:0009506: plasmodesma | 1.28E-02 |
| 33 | GO:0032580: Golgi cisterna membrane | 1.49E-02 |
| 34 | GO:0030529: intracellular ribonucleoprotein complex | 1.68E-02 |
| 35 | GO:0000932: P-body | 1.68E-02 |
| 36 | GO:0005886: plasma membrane | 2.02E-02 |
| 37 | GO:0019005: SCF ubiquitin ligase complex | 2.03E-02 |
| 38 | GO:0005819: spindle | 2.56E-02 |
| 39 | GO:0016020: membrane | 3.72E-02 |
| 40 | GO:0005635: nuclear envelope | 3.74E-02 |
| 41 | GO:0005681: spliceosomal complex | 4.01E-02 |
| 42 | GO:0005834: heterotrimeric G-protein complex | 4.20E-02 |
| 43 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.87E-02 |