Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G13740

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090706: specification of plant organ position0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
4GO:0018023: peptidyl-lysine trimethylation0.00E+00
5GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
6GO:0090627: plant epidermal cell differentiation0.00E+00
7GO:0010207: photosystem II assembly1.82E-06
8GO:0015995: chlorophyll biosynthetic process3.79E-05
9GO:0009734: auxin-activated signaling pathway5.16E-05
10GO:0010480: microsporocyte differentiation6.26E-05
11GO:0043007: maintenance of rDNA6.26E-05
12GO:0010450: inflorescence meristem growth6.26E-05
13GO:0035304: regulation of protein dephosphorylation1.52E-04
14GO:0018026: peptidyl-lysine monomethylation1.52E-04
15GO:0015790: UDP-xylose transport1.52E-04
16GO:0007275: multicellular organism development2.44E-04
17GO:0045165: cell fate commitment2.57E-04
18GO:0009765: photosynthesis, light harvesting4.99E-04
19GO:0010158: abaxial cell fate specification6.32E-04
20GO:1902183: regulation of shoot apical meristem development6.32E-04
21GO:0009228: thiamine biosynthetic process7.73E-04
22GO:0009913: epidermal cell differentiation7.73E-04
23GO:0042549: photosystem II stabilization7.73E-04
24GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway7.73E-04
25GO:0009942: longitudinal axis specification9.20E-04
26GO:0048437: floral organ development1.07E-03
27GO:0009769: photosynthesis, light harvesting in photosystem II1.07E-03
28GO:0050829: defense response to Gram-negative bacterium1.07E-03
29GO:0009645: response to low light intensity stimulus1.07E-03
30GO:0005978: glycogen biosynthetic process1.24E-03
31GO:0046620: regulation of organ growth1.24E-03
32GO:0010114: response to red light1.26E-03
33GO:0009926: auxin polar transport1.26E-03
34GO:0015979: photosynthesis1.28E-03
35GO:0009657: plastid organization1.41E-03
36GO:0007389: pattern specification process1.41E-03
37GO:0010093: specification of floral organ identity1.41E-03
38GO:0009664: plant-type cell wall organization1.57E-03
39GO:0009245: lipid A biosynthetic process1.58E-03
40GO:0010206: photosystem II repair1.58E-03
41GO:2000024: regulation of leaf development1.58E-03
42GO:0006783: heme biosynthetic process1.58E-03
43GO:0010205: photoinhibition1.77E-03
44GO:0006782: protoporphyrinogen IX biosynthetic process1.96E-03
45GO:0009698: phenylpropanoid metabolic process2.17E-03
46GO:0019684: photosynthesis, light reaction2.17E-03
47GO:1903507: negative regulation of nucleic acid-templated transcription2.17E-03
48GO:0048229: gametophyte development2.17E-03
49GO:0010075: regulation of meristem growth2.58E-03
50GO:0009933: meristem structural organization2.80E-03
51GO:0009934: regulation of meristem structural organization2.80E-03
52GO:0010030: positive regulation of seed germination3.03E-03
53GO:0009735: response to cytokinin3.24E-03
54GO:0006636: unsaturated fatty acid biosynthetic process3.26E-03
55GO:0009944: polarity specification of adaxial/abaxial axis3.49E-03
56GO:0006289: nucleotide-excision repair3.49E-03
57GO:0006633: fatty acid biosynthetic process3.71E-03
58GO:0007017: microtubule-based process3.74E-03
59GO:0009768: photosynthesis, light harvesting in photosystem I3.74E-03
60GO:0040008: regulation of growth3.88E-03
61GO:0009269: response to desiccation3.98E-03
62GO:0016114: terpenoid biosynthetic process3.98E-03
63GO:2000022: regulation of jasmonic acid mediated signaling pathway4.24E-03
64GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.50E-03
65GO:0009789: positive regulation of abscisic acid-activated signaling pathway5.03E-03
66GO:0042631: cellular response to water deprivation5.31E-03
67GO:0042335: cuticle development5.31E-03
68GO:0048653: anther development5.31E-03
69GO:0010154: fruit development5.59E-03
70GO:0009741: response to brassinosteroid5.59E-03
71GO:0048825: cotyledon development6.17E-03
72GO:0019252: starch biosynthetic process6.17E-03
73GO:0010193: response to ozone6.46E-03
74GO:0000302: response to reactive oxygen species6.46E-03
75GO:0010583: response to cyclopentenone6.76E-03
76GO:0010252: auxin homeostasis7.38E-03
77GO:0009828: plant-type cell wall loosening7.38E-03
78GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway8.04E-03
79GO:0009627: systemic acquired resistance9.01E-03
80GO:0018298: protein-chromophore linkage1.01E-02
81GO:0009733: response to auxin1.03E-02
82GO:0000160: phosphorelay signal transduction system1.04E-02
83GO:0010218: response to far red light1.08E-02
84GO:0009631: cold acclimation1.11E-02
85GO:0007568: aging1.11E-02
86GO:0009637: response to blue light1.19E-02
87GO:0034599: cellular response to oxidative stress1.23E-02
88GO:0009644: response to high light intensity1.50E-02
89GO:0008643: carbohydrate transport1.50E-02
90GO:0031347: regulation of defense response1.63E-02
91GO:0009736: cytokinin-activated signaling pathway1.75E-02
92GO:0010224: response to UV-B1.80E-02
93GO:0006417: regulation of translation1.89E-02
94GO:0009909: regulation of flower development1.89E-02
95GO:0009416: response to light stimulus2.05E-02
96GO:0009611: response to wounding2.09E-02
97GO:0042545: cell wall modification2.21E-02
98GO:0006396: RNA processing2.30E-02
99GO:0009793: embryo development ending in seed dormancy2.57E-02
100GO:0009845: seed germination2.80E-02
101GO:0042744: hydrogen peroxide catabolic process2.90E-02
102GO:0007623: circadian rhythm3.33E-02
103GO:0045490: pectin catabolic process3.33E-02
104GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.60E-02
105GO:0006979: response to oxidative stress4.16E-02
106GO:0009826: unidimensional cell growth4.42E-02
RankGO TermAdjusted P value
1GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
2GO:0010242: oxygen evolving activity6.26E-05
3GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity6.26E-05
4GO:0004853: uroporphyrinogen decarboxylase activity6.26E-05
5GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.26E-05
6GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.52E-04
7GO:0005464: UDP-xylose transmembrane transporter activity1.52E-04
8GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity1.52E-04
9GO:0004312: fatty acid synthase activity1.52E-04
10GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity2.57E-04
11GO:0070628: proteasome binding4.99E-04
12GO:0009011: starch synthase activity4.99E-04
13GO:0008878: glucose-1-phosphate adenylyltransferase activity4.99E-04
14GO:0016279: protein-lysine N-methyltransferase activity4.99E-04
15GO:0004130: cytochrome-c peroxidase activity7.73E-04
16GO:0031593: polyubiquitin binding7.73E-04
17GO:0031177: phosphopantetheine binding7.73E-04
18GO:0000035: acyl binding9.20E-04
19GO:0004602: glutathione peroxidase activity9.20E-04
20GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.24E-03
21GO:0071949: FAD binding1.58E-03
22GO:0009672: auxin:proton symporter activity1.77E-03
23GO:0010329: auxin efflux transmembrane transporter activity2.58E-03
24GO:0031072: heat shock protein binding2.58E-03
25GO:0008266: poly(U) RNA binding2.80E-03
26GO:0031409: pigment binding3.26E-03
27GO:0043130: ubiquitin binding3.49E-03
28GO:0003714: transcription corepressor activity3.49E-03
29GO:0033612: receptor serine/threonine kinase binding3.98E-03
30GO:0003756: protein disulfide isomerase activity4.76E-03
31GO:0003727: single-stranded RNA binding4.76E-03
32GO:0000156: phosphorelay response regulator activity7.07E-03
33GO:0003684: damaged DNA binding7.38E-03
34GO:0005515: protein binding7.44E-03
35GO:0005200: structural constituent of cytoskeleton7.70E-03
36GO:0016168: chlorophyll binding8.68E-03
37GO:0005096: GTPase activator activity1.04E-02
38GO:0004712: protein serine/threonine/tyrosine kinase activity1.26E-02
39GO:0004185: serine-type carboxypeptidase activity1.42E-02
40GO:0043621: protein self-association1.50E-02
41GO:0008289: lipid binding1.60E-02
42GO:0016298: lipase activity1.80E-02
43GO:0003777: microtubule motor activity1.89E-02
44GO:0045330: aspartyl esterase activity1.89E-02
45GO:0030599: pectinesterase activity2.16E-02
46GO:0051082: unfolded protein binding2.25E-02
47GO:0046910: pectinesterase inhibitor activity3.17E-02
48GO:0015297: antiporter activity3.22E-02
49GO:0003743: translation initiation factor activity3.72E-02
50GO:0046982: protein heterodimerization activity4.48E-02
51GO:0004601: peroxidase activity4.54E-02
52GO:0016788: hydrolase activity, acting on ester bonds4.60E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0009534: chloroplast thylakoid2.67E-12
3GO:0009507: chloroplast7.27E-11
4GO:0009535: chloroplast thylakoid membrane1.83E-10
5GO:0009570: chloroplast stroma5.39E-10
6GO:0009543: chloroplast thylakoid lumen1.91E-08
7GO:0009941: chloroplast envelope1.15E-05
8GO:0009579: thylakoid1.21E-05
9GO:0010287: plastoglobule1.89E-05
10GO:0009538: photosystem I reaction center2.73E-05
11GO:0031977: thylakoid lumen8.32E-05
12GO:0030095: chloroplast photosystem II1.18E-04
13GO:0009531: secondary cell wall3.73E-04
14GO:0009517: PSII associated light-harvesting complex II4.99E-04
15GO:0055035: plastid thylakoid membrane6.32E-04
16GO:0045298: tubulin complex1.58E-03
17GO:0016602: CCAAT-binding factor complex2.58E-03
18GO:0030076: light-harvesting complex3.03E-03
19GO:0009654: photosystem II oxygen evolving complex3.74E-03
20GO:0009522: photosystem I5.88E-03
21GO:0009523: photosystem II6.17E-03
22GO:0019898: extrinsic component of membrane6.17E-03
23GO:0071944: cell periphery7.07E-03
24GO:0031969: chloroplast membrane7.77E-03
25GO:0005618: cell wall4.98E-02
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Gene type



Gene DE type