GO Enrichment Analysis of Co-expressed Genes with
AT3G13230
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0070476: rRNA (guanine-N7)-methylation | 0.00E+00 |
| 3 | GO:0042430: indole-containing compound metabolic process | 0.00E+00 |
| 4 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 5 | GO:0006364: rRNA processing | 4.25E-07 |
| 6 | GO:1990641: response to iron ion starvation | 2.41E-05 |
| 7 | GO:2000232: regulation of rRNA processing | 2.41E-05 |
| 8 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 2.41E-05 |
| 9 | GO:0006430: lysyl-tRNA aminoacylation | 2.41E-05 |
| 10 | GO:0006487: protein N-linked glycosylation | 4.33E-05 |
| 11 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.16E-05 |
| 12 | GO:0006101: citrate metabolic process | 6.16E-05 |
| 13 | GO:0010155: regulation of proton transport | 6.16E-05 |
| 14 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 6.16E-05 |
| 15 | GO:0010197: polar nucleus fusion | 9.62E-05 |
| 16 | GO:0045039: protein import into mitochondrial inner membrane | 1.09E-04 |
| 17 | GO:0009855: determination of bilateral symmetry | 1.62E-04 |
| 18 | GO:0042273: ribosomal large subunit biogenesis | 2.21E-04 |
| 19 | GO:1900864: mitochondrial RNA modification | 2.21E-04 |
| 20 | GO:0006097: glyoxylate cycle | 2.84E-04 |
| 21 | GO:0000741: karyogamy | 3.51E-04 |
| 22 | GO:0000154: rRNA modification | 4.40E-04 |
| 23 | GO:0080186: developmental vegetative growth | 4.92E-04 |
| 24 | GO:0006102: isocitrate metabolic process | 5.68E-04 |
| 25 | GO:0009553: embryo sac development | 7.15E-04 |
| 26 | GO:0001708: cell fate specification | 7.25E-04 |
| 27 | GO:0007338: single fertilization | 7.25E-04 |
| 28 | GO:1900865: chloroplast RNA modification | 8.07E-04 |
| 29 | GO:0010205: photoinhibition | 8.07E-04 |
| 30 | GO:0010162: seed dormancy process | 8.92E-04 |
| 31 | GO:0043069: negative regulation of programmed cell death | 8.92E-04 |
| 32 | GO:0006626: protein targeting to mitochondrion | 1.16E-03 |
| 33 | GO:0034976: response to endoplasmic reticulum stress | 1.45E-03 |
| 34 | GO:0000027: ribosomal large subunit assembly | 1.55E-03 |
| 35 | GO:0030150: protein import into mitochondrial matrix | 1.55E-03 |
| 36 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.55E-03 |
| 37 | GO:0009294: DNA mediated transformation | 1.98E-03 |
| 38 | GO:0009960: endosperm development | 2.45E-03 |
| 39 | GO:0009567: double fertilization forming a zygote and endosperm | 3.22E-03 |
| 40 | GO:0032259: methylation | 3.26E-03 |
| 41 | GO:0006099: tricarboxylic acid cycle | 5.26E-03 |
| 42 | GO:0009644: response to high light intensity | 6.42E-03 |
| 43 | GO:0010228: vegetative to reproductive phase transition of meristem | 1.45E-02 |
| 44 | GO:0006412: translation | 1.52E-02 |
| 45 | GO:0046686: response to cadmium ion | 1.91E-02 |
| 46 | GO:0042254: ribosome biogenesis | 1.94E-02 |
| 47 | GO:0044550: secondary metabolite biosynthetic process | 2.37E-02 |
| 48 | GO:0045454: cell redox homeostasis | 2.54E-02 |
| 49 | GO:0045892: negative regulation of transcription, DNA-templated | 2.57E-02 |
| 50 | GO:0009793: embryo development ending in seed dormancy | 2.83E-02 |
| 51 | GO:0009735: response to cytokinin | 4.16E-02 |
| 52 | GO:0009555: pollen development | 4.43E-02 |
| 53 | GO:0051301: cell division | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 2 | GO:0016435: rRNA (guanine) methyltransferase activity | 0.00E+00 |
| 3 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 1.38E-06 |
| 4 | GO:0030515: snoRNA binding | 4.42E-06 |
| 5 | GO:0004824: lysine-tRNA ligase activity | 2.41E-05 |
| 6 | GO:0042134: rRNA primary transcript binding | 2.41E-05 |
| 7 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 6.16E-05 |
| 8 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 6.16E-05 |
| 9 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 6.16E-05 |
| 10 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 6.16E-05 |
| 11 | GO:0003994: aconitate hydratase activity | 6.16E-05 |
| 12 | GO:0008649: rRNA methyltransferase activity | 1.09E-04 |
| 13 | GO:0008469: histone-arginine N-methyltransferase activity | 1.09E-04 |
| 14 | GO:0008168: methyltransferase activity | 1.61E-04 |
| 15 | GO:0004576: oligosaccharyl transferase activity | 2.21E-04 |
| 16 | GO:0003723: RNA binding | 3.09E-04 |
| 17 | GO:0000166: nucleotide binding | 7.83E-04 |
| 18 | GO:0001054: RNA polymerase I activity | 9.78E-04 |
| 19 | GO:0001056: RNA polymerase III activity | 1.07E-03 |
| 20 | GO:0004407: histone deacetylase activity | 1.55E-03 |
| 21 | GO:0003756: protein disulfide isomerase activity | 2.10E-03 |
| 22 | GO:0003713: transcription coactivator activity | 2.45E-03 |
| 23 | GO:0004721: phosphoprotein phosphatase activity | 4.05E-03 |
| 24 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.34E-03 |
| 25 | GO:0003735: structural constituent of ribosome | 4.47E-03 |
| 26 | GO:0051539: 4 iron, 4 sulfur cluster binding | 5.59E-03 |
| 27 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 7.47E-03 |
| 28 | GO:0005507: copper ion binding | 8.56E-03 |
| 29 | GO:0008026: ATP-dependent helicase activity | 9.96E-03 |
| 30 | GO:0019843: rRNA binding | 1.12E-02 |
| 31 | GO:0008565: protein transporter activity | 1.27E-02 |
| 32 | GO:0003729: mRNA binding | 1.82E-02 |
| 33 | GO:0004497: monooxygenase activity | 2.23E-02 |
| 34 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 2.68E-02 |
| 35 | GO:0003924: GTPase activity | 2.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 2 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 3 | GO:0005730: nucleolus | 1.40E-14 |
| 4 | GO:0008250: oligosaccharyltransferase complex | 1.38E-06 |
| 5 | GO:0032040: small-subunit processome | 2.14E-05 |
| 6 | GO:0070545: PeBoW complex | 6.16E-05 |
| 7 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.93E-04 |
| 8 | GO:0005783: endoplasmic reticulum | 2.43E-04 |
| 9 | GO:0031428: box C/D snoRNP complex | 3.51E-04 |
| 10 | GO:0016363: nuclear matrix | 4.20E-04 |
| 11 | GO:0005736: DNA-directed RNA polymerase I complex | 7.25E-04 |
| 12 | GO:0005666: DNA-directed RNA polymerase III complex | 8.07E-04 |
| 13 | GO:0015030: Cajal body | 8.07E-04 |
| 14 | GO:0009506: plasmodesma | 9.00E-04 |
| 15 | GO:0019013: viral nucleocapsid | 1.16E-03 |
| 16 | GO:0005758: mitochondrial intermembrane space | 1.55E-03 |
| 17 | GO:0005774: vacuolar membrane | 1.80E-03 |
| 18 | GO:0005840: ribosome | 1.99E-03 |
| 19 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 2.10E-03 |
| 20 | GO:0005743: mitochondrial inner membrane | 3.17E-03 |
| 21 | GO:0005789: endoplasmic reticulum membrane | 3.20E-03 |
| 22 | GO:0005788: endoplasmic reticulum lumen | 3.76E-03 |
| 23 | GO:0005834: heterotrimeric G-protein complex | 8.77E-03 |
| 24 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.02E-02 |
| 25 | GO:0005622: intracellular | 1.07E-02 |
| 26 | GO:0005654: nucleoplasm | 1.10E-02 |
| 27 | GO:0005829: cytosol | 1.67E-02 |
| 28 | GO:0022627: cytosolic small ribosomal subunit | 1.71E-02 |
| 29 | GO:0005794: Golgi apparatus | 2.16E-02 |
| 30 | GO:0022625: cytosolic large ribosomal subunit | 2.31E-02 |
| 31 | GO:0005739: mitochondrion | 2.89E-02 |
| 32 | GO:0005634: nucleus | 3.00E-02 |
| 33 | GO:0005618: cell wall | 4.83E-02 |