GO Enrichment Analysis of Co-expressed Genes with
AT3G13180
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 3 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 4 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 5 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 6 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 7 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 8 | GO:0009658: chloroplast organization | 6.52E-08 |
| 9 | GO:0006412: translation | 7.22E-07 |
| 10 | GO:0032544: plastid translation | 7.83E-07 |
| 11 | GO:0042254: ribosome biogenesis | 1.59E-06 |
| 12 | GO:0010027: thylakoid membrane organization | 2.47E-06 |
| 13 | GO:0015995: chlorophyll biosynthetic process | 3.55E-06 |
| 14 | GO:0010236: plastoquinone biosynthetic process | 1.50E-05 |
| 15 | GO:0015979: photosynthesis | 5.63E-05 |
| 16 | GO:0006353: DNA-templated transcription, termination | 5.73E-05 |
| 17 | GO:0048564: photosystem I assembly | 5.73E-05 |
| 18 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.00E-04 |
| 19 | GO:1904964: positive regulation of phytol biosynthetic process | 1.00E-04 |
| 20 | GO:0042371: vitamin K biosynthetic process | 1.00E-04 |
| 21 | GO:0006430: lysyl-tRNA aminoacylation | 1.00E-04 |
| 22 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.00E-04 |
| 23 | GO:0010207: photosystem II assembly | 2.31E-04 |
| 24 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.36E-04 |
| 25 | GO:0009735: response to cytokinin | 2.59E-04 |
| 26 | GO:0006418: tRNA aminoacylation for protein translation | 3.58E-04 |
| 27 | GO:0010581: regulation of starch biosynthetic process | 3.92E-04 |
| 28 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 3.92E-04 |
| 29 | GO:0051604: protein maturation | 3.92E-04 |
| 30 | GO:0006241: CTP biosynthetic process | 5.64E-04 |
| 31 | GO:0006165: nucleoside diphosphate phosphorylation | 5.64E-04 |
| 32 | GO:0006228: UTP biosynthetic process | 5.64E-04 |
| 33 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 5.64E-04 |
| 34 | GO:0006424: glutamyl-tRNA aminoacylation | 5.64E-04 |
| 35 | GO:2001141: regulation of RNA biosynthetic process | 5.64E-04 |
| 36 | GO:0010239: chloroplast mRNA processing | 5.64E-04 |
| 37 | GO:0000413: protein peptidyl-prolyl isomerization | 5.95E-04 |
| 38 | GO:0006183: GTP biosynthetic process | 7.50E-04 |
| 39 | GO:0009790: embryo development | 8.63E-04 |
| 40 | GO:0032543: mitochondrial translation | 9.47E-04 |
| 41 | GO:0045038: protein import into chloroplast thylakoid membrane | 9.47E-04 |
| 42 | GO:0032973: amino acid export | 1.16E-03 |
| 43 | GO:0042549: photosystem II stabilization | 1.16E-03 |
| 44 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.16E-03 |
| 45 | GO:1901259: chloroplast rRNA processing | 1.38E-03 |
| 46 | GO:0042372: phylloquinone biosynthetic process | 1.38E-03 |
| 47 | GO:0017148: negative regulation of translation | 1.38E-03 |
| 48 | GO:0010189: vitamin E biosynthetic process | 1.38E-03 |
| 49 | GO:0009854: oxidative photosynthetic carbon pathway | 1.38E-03 |
| 50 | GO:0010019: chloroplast-nucleus signaling pathway | 1.38E-03 |
| 51 | GO:0048481: plant ovule development | 1.44E-03 |
| 52 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.62E-03 |
| 53 | GO:0006400: tRNA modification | 1.62E-03 |
| 54 | GO:0009772: photosynthetic electron transport in photosystem II | 1.62E-03 |
| 55 | GO:0043090: amino acid import | 1.62E-03 |
| 56 | GO:0042255: ribosome assembly | 1.87E-03 |
| 57 | GO:0006605: protein targeting | 1.87E-03 |
| 58 | GO:0045010: actin nucleation | 1.87E-03 |
| 59 | GO:0045292: mRNA cis splicing, via spliceosome | 1.87E-03 |
| 60 | GO:0009657: plastid organization | 2.14E-03 |
| 61 | GO:0019430: removal of superoxide radicals | 2.14E-03 |
| 62 | GO:0006526: arginine biosynthetic process | 2.14E-03 |
| 63 | GO:0071482: cellular response to light stimulus | 2.14E-03 |
| 64 | GO:0006508: proteolysis | 2.19E-03 |
| 65 | GO:0006457: protein folding | 2.40E-03 |
| 66 | GO:0010206: photosystem II repair | 2.41E-03 |
| 67 | GO:0080144: amino acid homeostasis | 2.41E-03 |
| 68 | GO:0000373: Group II intron splicing | 2.41E-03 |
| 69 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.70E-03 |
| 70 | GO:0010205: photoinhibition | 2.70E-03 |
| 71 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.70E-03 |
| 72 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.00E-03 |
| 73 | GO:0006535: cysteine biosynthetic process from serine | 3.00E-03 |
| 74 | GO:0006415: translational termination | 3.31E-03 |
| 75 | GO:0009073: aromatic amino acid family biosynthetic process | 3.31E-03 |
| 76 | GO:0043085: positive regulation of catalytic activity | 3.31E-03 |
| 77 | GO:0006352: DNA-templated transcription, initiation | 3.31E-03 |
| 78 | GO:0030036: actin cytoskeleton organization | 3.95E-03 |
| 79 | GO:0010020: chloroplast fission | 4.30E-03 |
| 80 | GO:0009793: embryo development ending in seed dormancy | 4.68E-03 |
| 81 | GO:0006636: unsaturated fatty acid biosynthetic process | 5.00E-03 |
| 82 | GO:0000027: ribosomal large subunit assembly | 5.37E-03 |
| 83 | GO:0019344: cysteine biosynthetic process | 5.37E-03 |
| 84 | GO:0016114: terpenoid biosynthetic process | 6.14E-03 |
| 85 | GO:0042744: hydrogen peroxide catabolic process | 6.28E-03 |
| 86 | GO:0009411: response to UV | 6.94E-03 |
| 87 | GO:0009306: protein secretion | 7.35E-03 |
| 88 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 7.78E-03 |
| 89 | GO:0009451: RNA modification | 7.79E-03 |
| 90 | GO:0008033: tRNA processing | 8.21E-03 |
| 91 | GO:0006520: cellular amino acid metabolic process | 8.65E-03 |
| 92 | GO:0000302: response to reactive oxygen species | 1.00E-02 |
| 93 | GO:0032502: developmental process | 1.05E-02 |
| 94 | GO:0030163: protein catabolic process | 1.10E-02 |
| 95 | GO:0010090: trichome morphogenesis | 1.10E-02 |
| 96 | GO:0009567: double fertilization forming a zygote and endosperm | 1.15E-02 |
| 97 | GO:0009817: defense response to fungus, incompatible interaction | 1.57E-02 |
| 98 | GO:0018298: protein-chromophore linkage | 1.57E-02 |
| 99 | GO:0009631: cold acclimation | 1.74E-02 |
| 100 | GO:0045454: cell redox homeostasis | 1.76E-02 |
| 101 | GO:0016051: carbohydrate biosynthetic process | 1.86E-02 |
| 102 | GO:0009637: response to blue light | 1.86E-02 |
| 103 | GO:0009853: photorespiration | 1.86E-02 |
| 104 | GO:0034599: cellular response to oxidative stress | 1.91E-02 |
| 105 | GO:0030001: metal ion transport | 2.03E-02 |
| 106 | GO:0032259: methylation | 2.08E-02 |
| 107 | GO:0042542: response to hydrogen peroxide | 2.16E-02 |
| 108 | GO:0010114: response to red light | 2.22E-02 |
| 109 | GO:0009585: red, far-red light phototransduction | 2.75E-02 |
| 110 | GO:0006096: glycolytic process | 3.09E-02 |
| 111 | GO:0055114: oxidation-reduction process | 3.60E-02 |
| 112 | GO:0006633: fatty acid biosynthetic process | 4.87E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 2 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 4 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 5 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 6 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 7 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 8 | GO:0005048: signal sequence binding | 0.00E+00 |
| 9 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 10 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 11 | GO:0019843: rRNA binding | 4.12E-14 |
| 12 | GO:0003735: structural constituent of ribosome | 5.58E-07 |
| 13 | GO:0043023: ribosomal large subunit binding | 4.78E-06 |
| 14 | GO:0004176: ATP-dependent peptidase activity | 1.36E-05 |
| 15 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.74E-05 |
| 16 | GO:0008237: metallopeptidase activity | 6.46E-05 |
| 17 | GO:0045485: omega-6 fatty acid desaturase activity | 1.00E-04 |
| 18 | GO:0004163: diphosphomevalonate decarboxylase activity | 1.00E-04 |
| 19 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.00E-04 |
| 20 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 1.00E-04 |
| 21 | GO:0004824: lysine-tRNA ligase activity | 1.00E-04 |
| 22 | GO:0016630: protochlorophyllide reductase activity | 2.36E-04 |
| 23 | GO:0002161: aminoacyl-tRNA editing activity | 3.92E-04 |
| 24 | GO:0004751: ribose-5-phosphate isomerase activity | 3.92E-04 |
| 25 | GO:0030267: glyoxylate reductase (NADP) activity | 3.92E-04 |
| 26 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 3.92E-04 |
| 27 | GO:0004812: aminoacyl-tRNA ligase activity | 5.51E-04 |
| 28 | GO:0016851: magnesium chelatase activity | 5.64E-04 |
| 29 | GO:0016149: translation release factor activity, codon specific | 5.64E-04 |
| 30 | GO:0004550: nucleoside diphosphate kinase activity | 5.64E-04 |
| 31 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 5.64E-04 |
| 32 | GO:0043495: protein anchor | 7.50E-04 |
| 33 | GO:0004659: prenyltransferase activity | 7.50E-04 |
| 34 | GO:0001053: plastid sigma factor activity | 7.50E-04 |
| 35 | GO:0016987: sigma factor activity | 7.50E-04 |
| 36 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 9.47E-04 |
| 37 | GO:0004040: amidase activity | 9.47E-04 |
| 38 | GO:0003959: NADPH dehydrogenase activity | 9.47E-04 |
| 39 | GO:0004130: cytochrome-c peroxidase activity | 1.16E-03 |
| 40 | GO:0016688: L-ascorbate peroxidase activity | 1.16E-03 |
| 41 | GO:0008236: serine-type peptidase activity | 1.37E-03 |
| 42 | GO:0015631: tubulin binding | 1.38E-03 |
| 43 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 1.38E-03 |
| 44 | GO:0004124: cysteine synthase activity | 1.38E-03 |
| 45 | GO:0019899: enzyme binding | 1.62E-03 |
| 46 | GO:0016491: oxidoreductase activity | 1.74E-03 |
| 47 | GO:0008312: 7S RNA binding | 1.87E-03 |
| 48 | GO:0003747: translation release factor activity | 2.41E-03 |
| 49 | GO:0008047: enzyme activator activity | 3.00E-03 |
| 50 | GO:0015020: glucuronosyltransferase activity | 3.00E-03 |
| 51 | GO:0000049: tRNA binding | 3.63E-03 |
| 52 | GO:0031072: heat shock protein binding | 3.95E-03 |
| 53 | GO:0009982: pseudouridine synthase activity | 3.95E-03 |
| 54 | GO:0008266: poly(U) RNA binding | 4.30E-03 |
| 55 | GO:0005528: FK506 binding | 5.37E-03 |
| 56 | GO:0016887: ATPase activity | 6.83E-03 |
| 57 | GO:0022891: substrate-specific transmembrane transporter activity | 6.94E-03 |
| 58 | GO:0003727: single-stranded RNA binding | 7.35E-03 |
| 59 | GO:0008080: N-acetyltransferase activity | 8.65E-03 |
| 60 | GO:0004791: thioredoxin-disulfide reductase activity | 9.10E-03 |
| 61 | GO:0042802: identical protein binding | 9.68E-03 |
| 62 | GO:0016740: transferase activity | 1.05E-02 |
| 63 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.10E-02 |
| 64 | GO:0008168: methyltransferase activity | 1.14E-02 |
| 65 | GO:0005507: copper ion binding | 1.27E-02 |
| 66 | GO:0016168: chlorophyll binding | 1.35E-02 |
| 67 | GO:0003723: RNA binding | 1.36E-02 |
| 68 | GO:0008375: acetylglucosaminyltransferase activity | 1.40E-02 |
| 69 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.51E-02 |
| 70 | GO:0005525: GTP binding | 1.53E-02 |
| 71 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.57E-02 |
| 72 | GO:0004222: metalloendopeptidase activity | 1.68E-02 |
| 73 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.03E-02 |
| 74 | GO:0003924: GTPase activity | 2.17E-02 |
| 75 | GO:0005524: ATP binding | 2.26E-02 |
| 76 | GO:0043621: protein self-association | 2.35E-02 |
| 77 | GO:0005198: structural molecule activity | 2.41E-02 |
| 78 | GO:0051287: NAD binding | 2.55E-02 |
| 79 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.75E-02 |
| 80 | GO:0003690: double-stranded DNA binding | 2.81E-02 |
| 81 | GO:0015171: amino acid transmembrane transporter activity | 2.95E-02 |
| 82 | GO:0003729: mRNA binding | 3.26E-02 |
| 83 | GO:0051082: unfolded protein binding | 3.53E-02 |
| 84 | GO:0004252: serine-type endopeptidase activity | 4.46E-02 |
| 85 | GO:0030170: pyridoxal phosphate binding | 4.46E-02 |
| 86 | GO:0005515: protein binding | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.13E-49 |
| 3 | GO:0009570: chloroplast stroma | 3.80E-37 |
| 4 | GO:0009941: chloroplast envelope | 5.24E-29 |
| 5 | GO:0009579: thylakoid | 1.96E-16 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 1.66E-13 |
| 7 | GO:0031977: thylakoid lumen | 1.15E-10 |
| 8 | GO:0005840: ribosome | 1.85E-09 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 4.14E-09 |
| 10 | GO:0009534: chloroplast thylakoid | 5.44E-07 |
| 11 | GO:0042651: thylakoid membrane | 1.16E-05 |
| 12 | GO:0009547: plastid ribosome | 1.00E-04 |
| 13 | GO:0000311: plastid large ribosomal subunit | 1.77E-04 |
| 14 | GO:0080085: signal recognition particle, chloroplast targeting | 2.36E-04 |
| 15 | GO:0009536: plastid | 3.52E-04 |
| 16 | GO:0009654: photosystem II oxygen evolving complex | 3.58E-04 |
| 17 | GO:0010007: magnesium chelatase complex | 3.92E-04 |
| 18 | GO:0009509: chromoplast | 3.92E-04 |
| 19 | GO:0009706: chloroplast inner membrane | 5.38E-04 |
| 20 | GO:0019898: extrinsic component of membrane | 7.34E-04 |
| 21 | GO:0009526: plastid envelope | 7.50E-04 |
| 22 | GO:0055035: plastid thylakoid membrane | 9.47E-04 |
| 23 | GO:0031209: SCAR complex | 1.16E-03 |
| 24 | GO:0022626: cytosolic ribosome | 1.51E-03 |
| 25 | GO:0009533: chloroplast stromal thylakoid | 1.62E-03 |
| 26 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.14E-03 |
| 27 | GO:0031969: chloroplast membrane | 2.40E-03 |
| 28 | GO:0030095: chloroplast photosystem II | 4.30E-03 |
| 29 | GO:0009532: plastid stroma | 6.14E-03 |
| 30 | GO:0009523: photosystem II | 9.56E-03 |
| 31 | GO:0016020: membrane | 1.34E-02 |
| 32 | GO:0015934: large ribosomal subunit | 1.74E-02 |
| 33 | GO:0005739: mitochondrion | 2.35E-02 |