Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G13090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010055: atrichoblast differentiation0.00E+00
2GO:0043201: response to leucine0.00E+00
3GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
4GO:0080052: response to histidine0.00E+00
5GO:0080053: response to phenylalanine0.00E+00
6GO:0006983: ER overload response0.00E+00
7GO:0006793: phosphorus metabolic process0.00E+00
8GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
9GO:0006182: cGMP biosynthetic process0.00E+00
10GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
11GO:0043066: negative regulation of apoptotic process1.29E-06
12GO:0048363: mucilage pectin metabolic process1.62E-04
13GO:0051938: L-glutamate import1.62E-04
14GO:0099132: ATP hydrolysis coupled cation transmembrane transport1.62E-04
15GO:0010726: positive regulation of hydrogen peroxide metabolic process1.62E-04
16GO:0032107: regulation of response to nutrient levels1.62E-04
17GO:0008202: steroid metabolic process2.20E-04
18GO:0043069: negative regulation of programmed cell death2.60E-04
19GO:0009817: defense response to fungus, incompatible interaction2.86E-04
20GO:0009407: toxin catabolic process3.26E-04
21GO:0006468: protein phosphorylation3.55E-04
22GO:0015802: basic amino acid transport3.69E-04
23GO:0009866: induced systemic resistance, ethylene mediated signaling pathway3.69E-04
24GO:0015865: purine nucleotide transport3.69E-04
25GO:0042939: tripeptide transport3.69E-04
26GO:0019441: tryptophan catabolic process to kynurenine3.69E-04
27GO:0043091: L-arginine import3.69E-04
28GO:0051592: response to calcium ion3.69E-04
29GO:0080183: response to photooxidative stress3.69E-04
30GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway6.04E-04
31GO:0010351: lithium ion transport6.04E-04
32GO:0009636: response to toxic substance6.27E-04
33GO:0006874: cellular calcium ion homeostasis6.78E-04
34GO:0071456: cellular response to hypoxia8.11E-04
35GO:0046902: regulation of mitochondrial membrane permeability8.63E-04
36GO:0080001: mucilage extrusion from seed coat8.63E-04
37GO:0006882: cellular zinc ion homeostasis8.63E-04
38GO:0010116: positive regulation of abscisic acid biosynthetic process8.63E-04
39GO:0009620: response to fungus1.09E-03
40GO:0045227: capsule polysaccharide biosynthetic process1.14E-03
41GO:0006536: glutamate metabolic process1.14E-03
42GO:0033358: UDP-L-arabinose biosynthetic process1.14E-03
43GO:0042991: transcription factor import into nucleus1.14E-03
44GO:0042938: dipeptide transport1.14E-03
45GO:0007029: endoplasmic reticulum organization1.45E-03
46GO:0032259: methylation1.74E-03
47GO:0010256: endomembrane system organization1.78E-03
48GO:0006014: D-ribose metabolic process1.78E-03
49GO:0006561: proline biosynthetic process1.78E-03
50GO:0010942: positive regulation of cell death1.78E-03
51GO:0009751: response to salicylic acid1.82E-03
52GO:0048280: vesicle fusion with Golgi apparatus2.14E-03
53GO:1900056: negative regulation of leaf senescence2.52E-03
54GO:0030026: cellular manganese ion homeostasis2.52E-03
55GO:0000122: negative regulation of transcription from RNA polymerase II promoter2.52E-03
56GO:1902074: response to salt2.52E-03
57GO:0009827: plant-type cell wall modification3.33E-03
58GO:0010120: camalexin biosynthetic process3.33E-03
59GO:0009808: lignin metabolic process3.33E-03
60GO:0007338: single fertilization3.77E-03
61GO:0009821: alkaloid biosynthetic process3.77E-03
62GO:0009056: catabolic process3.77E-03
63GO:0006896: Golgi to vacuole transport4.69E-03
64GO:0055062: phosphate ion homeostasis4.69E-03
65GO:0009688: abscisic acid biosynthetic process4.69E-03
66GO:0000038: very long-chain fatty acid metabolic process5.19E-03
67GO:0009682: induced systemic resistance5.19E-03
68GO:0042538: hyperosmotic salinity response5.58E-03
69GO:0000266: mitochondrial fission5.69E-03
70GO:0009809: lignin biosynthetic process5.99E-03
71GO:0006626: protein targeting to mitochondrion6.22E-03
72GO:0055046: microgametogenesis6.22E-03
73GO:0009718: anthocyanin-containing compound biosynthetic process6.22E-03
74GO:0009225: nucleotide-sugar metabolic process7.32E-03
75GO:0070588: calcium ion transmembrane transport7.32E-03
76GO:0005992: trehalose biosynthetic process8.48E-03
77GO:0003333: amino acid transmembrane transport9.72E-03
78GO:0016998: cell wall macromolecule catabolic process9.72E-03
79GO:0010227: floral organ abscission1.10E-02
80GO:0006012: galactose metabolic process1.10E-02
81GO:0009561: megagametogenesis1.17E-02
82GO:0042147: retrograde transport, endosome to Golgi1.24E-02
83GO:0007165: signal transduction1.24E-02
84GO:0042742: defense response to bacterium1.29E-02
85GO:0042391: regulation of membrane potential1.31E-02
86GO:0006814: sodium ion transport1.45E-02
87GO:0042752: regulation of circadian rhythm1.45E-02
88GO:0006623: protein targeting to vacuole1.52E-02
89GO:0048825: cotyledon development1.52E-02
90GO:0019252: starch biosynthetic process1.52E-02
91GO:0009851: auxin biosynthetic process1.52E-02
92GO:0002229: defense response to oomycetes1.60E-02
93GO:0006891: intra-Golgi vesicle-mediated transport1.60E-02
94GO:0016310: phosphorylation1.65E-02
95GO:0009630: gravitropism1.67E-02
96GO:0009617: response to bacterium1.77E-02
97GO:0009567: double fertilization forming a zygote and endosperm1.83E-02
98GO:0010252: auxin homeostasis1.83E-02
99GO:0009615: response to virus2.07E-02
100GO:0009607: response to biotic stimulus2.16E-02
101GO:0009627: systemic acquired resistance2.24E-02
102GO:0006888: ER to Golgi vesicle-mediated transport2.33E-02
103GO:0006950: response to stress2.33E-02
104GO:0008219: cell death2.51E-02
105GO:0006952: defense response2.53E-02
106GO:0048527: lateral root development2.78E-02
107GO:0016192: vesicle-mediated transport2.99E-02
108GO:0044550: secondary metabolite biosynthetic process3.09E-02
109GO:0006839: mitochondrial transport3.26E-02
110GO:0000209: protein polyubiquitination3.66E-02
111GO:0006869: lipid transport3.73E-02
112GO:0006855: drug transmembrane transport3.97E-02
113GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.07E-02
114GO:0006812: cation transport4.18E-02
115GO:0009736: cytokinin-activated signaling pathway4.39E-02
116GO:0009753: response to jasmonic acid4.48E-02
117GO:0006857: oligopeptide transport4.61E-02
RankGO TermAdjusted P value
1GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.37E-05
2GO:0004364: glutathione transferase activity4.33E-05
3GO:0008142: oxysterol binding1.50E-04
4GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity1.62E-04
5GO:0016301: kinase activity2.15E-04
6GO:0008171: O-methyltransferase activity2.60E-04
7GO:0004674: protein serine/threonine kinase activity2.78E-04
8GO:0032934: sterol binding3.69E-04
9GO:0004061: arylformamidase activity3.69E-04
10GO:0042937: tripeptide transporter activity3.69E-04
11GO:0004566: beta-glucuronidase activity3.69E-04
12GO:0009055: electron carrier activity4.15E-04
13GO:0042409: caffeoyl-CoA O-methyltransferase activity6.04E-04
14GO:0004383: guanylate cyclase activity6.04E-04
15GO:0015189: L-lysine transmembrane transporter activity8.63E-04
16GO:0015181: arginine transmembrane transporter activity8.63E-04
17GO:0004351: glutamate decarboxylase activity8.63E-04
18GO:0050660: flavin adenine dinucleotide binding9.31E-04
19GO:0042936: dipeptide transporter activity1.14E-03
20GO:0015369: calcium:proton antiporter activity1.14E-03
21GO:0005313: L-glutamate transmembrane transporter activity1.14E-03
22GO:0004031: aldehyde oxidase activity1.14E-03
23GO:0050302: indole-3-acetaldehyde oxidase activity1.14E-03
24GO:0010279: indole-3-acetic acid amido synthetase activity1.14E-03
25GO:0015368: calcium:cation antiporter activity1.14E-03
26GO:0050373: UDP-arabinose 4-epimerase activity1.14E-03
27GO:0052689: carboxylic ester hydrolase activity1.20E-03
28GO:0004040: amidase activity1.45E-03
29GO:0005496: steroid binding1.45E-03
30GO:0005471: ATP:ADP antiporter activity1.45E-03
31GO:0004747: ribokinase activity2.14E-03
32GO:0003978: UDP-glucose 4-epimerase activity2.14E-03
33GO:0008865: fructokinase activity2.91E-03
34GO:0015491: cation:cation antiporter activity2.91E-03
35GO:0015174: basic amino acid transmembrane transporter activity4.22E-03
36GO:0016844: strictosidine synthase activity4.22E-03
37GO:0051537: 2 iron, 2 sulfur cluster binding4.81E-03
38GO:0005388: calcium-transporting ATPase activity6.22E-03
39GO:0030553: cGMP binding7.32E-03
40GO:0005217: intracellular ligand-gated ion channel activity7.32E-03
41GO:0004970: ionotropic glutamate receptor activity7.32E-03
42GO:0030552: cAMP binding7.32E-03
43GO:0005516: calmodulin binding8.25E-03
44GO:0001046: core promoter sequence-specific DNA binding8.48E-03
45GO:0015035: protein disulfide oxidoreductase activity8.78E-03
46GO:0005216: ion channel activity9.09E-03
47GO:0030551: cyclic nucleotide binding1.31E-02
48GO:0005249: voltage-gated potassium channel activity1.31E-02
49GO:0005524: ATP binding1.37E-02
50GO:0004872: receptor activity1.52E-02
51GO:0008168: methyltransferase activity2.21E-02
52GO:0030247: polysaccharide binding2.33E-02
53GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.42E-02
54GO:0015238: drug transmembrane transporter activity2.60E-02
55GO:0030145: manganese ion binding2.78E-02
56GO:0000149: SNARE binding3.16E-02
57GO:0005484: SNAP receptor activity3.55E-02
58GO:0042803: protein homodimerization activity3.56E-02
59GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.67E-02
60GO:0003924: GTPase activity4.18E-02
61GO:0005506: iron ion binding4.43E-02
62GO:0016298: lipase activity4.50E-02
63GO:0015171: amino acid transmembrane transporter activity4.72E-02
64GO:0045735: nutrient reservoir activity4.94E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane2.25E-06
2GO:0005886: plasma membrane1.10E-04
3GO:0005783: endoplasmic reticulum7.67E-04
4GO:0005770: late endosome1.19E-03
5GO:0032580: Golgi cisterna membrane1.77E-03
6GO:0030140: trans-Golgi network transport vesicle1.78E-03
7GO:0012507: ER to Golgi transport vesicle membrane2.91E-03
8GO:0000325: plant-type vacuole3.16E-03
9GO:0005765: lysosomal membrane5.19E-03
10GO:0005773: vacuole8.63E-03
11GO:0009705: plant-type vacuole membrane1.48E-02
12GO:0031201: SNARE complex3.35E-02
13GO:0031902: late endosome membrane3.35E-02
14GO:0031966: mitochondrial membrane4.18E-02
15GO:0000502: proteasome complex4.39E-02
16GO:0043231: intracellular membrane-bounded organelle4.60E-02
17GO:0005635: nuclear envelope4.61E-02
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Gene type



Gene DE type