GO Enrichment Analysis of Co-expressed Genes with
AT3G12930
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:2000505: regulation of energy homeostasis | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 4 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 5 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 6 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 7 | GO:1904966: positive regulation of vitamin E biosynthetic process | 0.00E+00 |
| 8 | GO:1904964: positive regulation of phytol biosynthetic process | 0.00E+00 |
| 9 | GO:0006412: translation | 3.88E-16 |
| 10 | GO:0015979: photosynthesis | 2.44E-14 |
| 11 | GO:0042254: ribosome biogenesis | 9.51E-10 |
| 12 | GO:0032544: plastid translation | 6.44E-08 |
| 13 | GO:1901259: chloroplast rRNA processing | 1.77E-06 |
| 14 | GO:0009735: response to cytokinin | 1.83E-06 |
| 15 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.61E-06 |
| 16 | GO:0010206: photosystem II repair | 8.86E-06 |
| 17 | GO:0090391: granum assembly | 9.47E-06 |
| 18 | GO:0010027: thylakoid membrane organization | 2.97E-05 |
| 19 | GO:0010207: photosystem II assembly | 3.89E-05 |
| 20 | GO:0010236: plastoquinone biosynthetic process | 6.26E-05 |
| 21 | GO:0045038: protein import into chloroplast thylakoid membrane | 6.26E-05 |
| 22 | GO:0031365: N-terminal protein amino acid modification | 6.26E-05 |
| 23 | GO:0042372: phylloquinone biosynthetic process | 1.27E-04 |
| 24 | GO:0009772: photosynthetic electron transport in photosystem II | 1.67E-04 |
| 25 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.36E-04 |
| 26 | GO:0042371: vitamin K biosynthetic process | 2.36E-04 |
| 27 | GO:0043686: co-translational protein modification | 2.36E-04 |
| 28 | GO:1902458: positive regulation of stomatal opening | 2.36E-04 |
| 29 | GO:0034337: RNA folding | 2.36E-04 |
| 30 | GO:0009658: chloroplast organization | 3.20E-04 |
| 31 | GO:0010205: photoinhibition | 3.78E-04 |
| 32 | GO:0015995: chlorophyll biosynthetic process | 4.98E-04 |
| 33 | GO:0009773: photosynthetic electron transport in photosystem I | 5.11E-04 |
| 34 | GO:0010024: phytochromobilin biosynthetic process | 5.24E-04 |
| 35 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 5.24E-04 |
| 36 | GO:0006729: tetrahydrobiopterin biosynthetic process | 5.24E-04 |
| 37 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 5.24E-04 |
| 38 | GO:0018298: protein-chromophore linkage | 5.68E-04 |
| 39 | GO:0006788: heme oxidation | 8.52E-04 |
| 40 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 8.52E-04 |
| 41 | GO:0006518: peptide metabolic process | 8.52E-04 |
| 42 | GO:0071492: cellular response to UV-A | 8.52E-04 |
| 43 | GO:0006636: unsaturated fatty acid biosynthetic process | 9.25E-04 |
| 44 | GO:0071484: cellular response to light intensity | 1.21E-03 |
| 45 | GO:0009102: biotin biosynthetic process | 1.21E-03 |
| 46 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.21E-03 |
| 47 | GO:0034059: response to anoxia | 1.21E-03 |
| 48 | GO:0010239: chloroplast mRNA processing | 1.21E-03 |
| 49 | GO:0006424: glutamyl-tRNA aminoacylation | 1.21E-03 |
| 50 | GO:0006168: adenine salvage | 1.21E-03 |
| 51 | GO:0006986: response to unfolded protein | 1.21E-03 |
| 52 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.21E-03 |
| 53 | GO:0006166: purine ribonucleoside salvage | 1.21E-03 |
| 54 | GO:0009306: protein secretion | 1.59E-03 |
| 55 | GO:0071486: cellular response to high light intensity | 1.62E-03 |
| 56 | GO:0009765: photosynthesis, light harvesting | 1.62E-03 |
| 57 | GO:0032543: mitochondrial translation | 2.07E-03 |
| 58 | GO:0044209: AMP salvage | 2.07E-03 |
| 59 | GO:0035435: phosphate ion transmembrane transport | 2.55E-03 |
| 60 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.55E-03 |
| 61 | GO:0009955: adaxial/abaxial pattern specification | 3.06E-03 |
| 62 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.06E-03 |
| 63 | GO:0010189: vitamin E biosynthetic process | 3.06E-03 |
| 64 | GO:0010019: chloroplast-nucleus signaling pathway | 3.06E-03 |
| 65 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.61E-03 |
| 66 | GO:0010196: nonphotochemical quenching | 3.61E-03 |
| 67 | GO:0055085: transmembrane transport | 3.92E-03 |
| 68 | GO:0048564: photosystem I assembly | 4.19E-03 |
| 69 | GO:0006353: DNA-templated transcription, termination | 4.19E-03 |
| 70 | GO:0006605: protein targeting | 4.19E-03 |
| 71 | GO:2000070: regulation of response to water deprivation | 4.19E-03 |
| 72 | GO:0015996: chlorophyll catabolic process | 4.79E-03 |
| 73 | GO:0007186: G-protein coupled receptor signaling pathway | 4.79E-03 |
| 74 | GO:0006526: arginine biosynthetic process | 4.79E-03 |
| 75 | GO:0030001: metal ion transport | 6.69E-03 |
| 76 | GO:0006535: cysteine biosynthetic process from serine | 6.78E-03 |
| 77 | GO:0045036: protein targeting to chloroplast | 6.78E-03 |
| 78 | GO:0018119: peptidyl-cysteine S-nitrosylation | 7.50E-03 |
| 79 | GO:0009644: response to high light intensity | 8.19E-03 |
| 80 | GO:0016024: CDP-diacylglycerol biosynthetic process | 8.25E-03 |
| 81 | GO:0045037: protein import into chloroplast stroma | 8.25E-03 |
| 82 | GO:0009737: response to abscisic acid | 1.14E-02 |
| 83 | GO:0019344: cysteine biosynthetic process | 1.24E-02 |
| 84 | GO:0000027: ribosomal large subunit assembly | 1.24E-02 |
| 85 | GO:0031408: oxylipin biosynthetic process | 1.42E-02 |
| 86 | GO:0006869: lipid transport | 1.54E-02 |
| 87 | GO:0009742: brassinosteroid mediated signaling pathway | 1.55E-02 |
| 88 | GO:0032259: methylation | 1.70E-02 |
| 89 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.80E-02 |
| 90 | GO:0042335: cuticle development | 1.91E-02 |
| 91 | GO:0000413: protein peptidyl-prolyl isomerization | 1.91E-02 |
| 92 | GO:0006520: cellular amino acid metabolic process | 2.01E-02 |
| 93 | GO:0010182: sugar mediated signaling pathway | 2.01E-02 |
| 94 | GO:0015986: ATP synthesis coupled proton transport | 2.12E-02 |
| 95 | GO:0009790: embryo development | 2.14E-02 |
| 96 | GO:0006633: fatty acid biosynthetic process | 2.30E-02 |
| 97 | GO:0000302: response to reactive oxygen species | 2.34E-02 |
| 98 | GO:0045490: pectin catabolic process | 2.53E-02 |
| 99 | GO:0030163: protein catabolic process | 2.56E-02 |
| 100 | GO:0009567: double fertilization forming a zygote and endosperm | 2.68E-02 |
| 101 | GO:0042128: nitrate assimilation | 3.29E-02 |
| 102 | GO:0009817: defense response to fungus, incompatible interaction | 3.67E-02 |
| 103 | GO:0009793: embryo development ending in seed dormancy | 3.69E-02 |
| 104 | GO:0009631: cold acclimation | 4.07E-02 |
| 105 | GO:0034599: cellular response to oxidative stress | 4.48E-02 |
| 106 | GO:0006839: mitochondrial transport | 4.76E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 2 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 3 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 4 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 5 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 6 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 7 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 8 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 9 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 10 | GO:0005048: signal sequence binding | 0.00E+00 |
| 11 | GO:0019843: rRNA binding | 1.94E-19 |
| 12 | GO:0003735: structural constituent of ribosome | 3.59E-15 |
| 13 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 6.02E-07 |
| 14 | GO:0005528: FK506 binding | 1.87E-06 |
| 15 | GO:0022891: substrate-specific transmembrane transporter activity | 4.37E-06 |
| 16 | GO:0016851: magnesium chelatase activity | 2.15E-05 |
| 17 | GO:0016168: chlorophyll binding | 3.31E-05 |
| 18 | GO:0043495: protein anchor | 3.91E-05 |
| 19 | GO:0019899: enzyme binding | 1.67E-04 |
| 20 | GO:0042586: peptide deformylase activity | 2.36E-04 |
| 21 | GO:0045485: omega-6 fatty acid desaturase activity | 2.36E-04 |
| 22 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 2.36E-04 |
| 23 | GO:0005080: protein kinase C binding | 2.36E-04 |
| 24 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 2.36E-04 |
| 25 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 2.36E-04 |
| 26 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 5.24E-04 |
| 27 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 8.52E-04 |
| 28 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 8.52E-04 |
| 29 | GO:0003999: adenine phosphoribosyltransferase activity | 1.21E-03 |
| 30 | GO:0043023: ribosomal large subunit binding | 1.21E-03 |
| 31 | GO:0008097: 5S rRNA binding | 1.21E-03 |
| 32 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.62E-03 |
| 33 | GO:0052793: pectin acetylesterase activity | 1.62E-03 |
| 34 | GO:0004392: heme oxygenase (decyclizing) activity | 1.62E-03 |
| 35 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.62E-03 |
| 36 | GO:0004659: prenyltransferase activity | 1.62E-03 |
| 37 | GO:0004040: amidase activity | 2.07E-03 |
| 38 | GO:0005509: calcium ion binding | 2.22E-03 |
| 39 | GO:0004130: cytochrome-c peroxidase activity | 2.55E-03 |
| 40 | GO:0016208: AMP binding | 2.55E-03 |
| 41 | GO:0016688: L-ascorbate peroxidase activity | 2.55E-03 |
| 42 | GO:0004124: cysteine synthase activity | 3.06E-03 |
| 43 | GO:0015631: tubulin binding | 3.06E-03 |
| 44 | GO:0004017: adenylate kinase activity | 3.06E-03 |
| 45 | GO:0008235: metalloexopeptidase activity | 3.61E-03 |
| 46 | GO:0008312: 7S RNA binding | 4.19E-03 |
| 47 | GO:0008236: serine-type peptidase activity | 4.41E-03 |
| 48 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.64E-03 |
| 49 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.79E-03 |
| 50 | GO:0042802: identical protein binding | 6.46E-03 |
| 51 | GO:0004177: aminopeptidase activity | 7.50E-03 |
| 52 | GO:0016788: hydrolase activity, acting on ester bonds | 8.50E-03 |
| 53 | GO:0015114: phosphate ion transmembrane transporter activity | 9.02E-03 |
| 54 | GO:0004565: beta-galactosidase activity | 9.02E-03 |
| 55 | GO:0031072: heat shock protein binding | 9.02E-03 |
| 56 | GO:0008266: poly(U) RNA binding | 9.82E-03 |
| 57 | GO:0008146: sulfotransferase activity | 1.06E-02 |
| 58 | GO:0052689: carboxylic ester hydrolase activity | 1.24E-02 |
| 59 | GO:0043424: protein histidine kinase binding | 1.32E-02 |
| 60 | GO:0051087: chaperone binding | 1.32E-02 |
| 61 | GO:0004707: MAP kinase activity | 1.42E-02 |
| 62 | GO:0004176: ATP-dependent peptidase activity | 1.42E-02 |
| 63 | GO:0016491: oxidoreductase activity | 1.43E-02 |
| 64 | GO:0051082: unfolded protein binding | 1.46E-02 |
| 65 | GO:0030570: pectate lyase activity | 1.61E-02 |
| 66 | GO:0003756: protein disulfide isomerase activity | 1.70E-02 |
| 67 | GO:0008080: N-acetyltransferase activity | 2.01E-02 |
| 68 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 2.01E-02 |
| 69 | GO:0004252: serine-type endopeptidase activity | 2.03E-02 |
| 70 | GO:0005525: GTP binding | 2.11E-02 |
| 71 | GO:0008289: lipid binding | 2.71E-02 |
| 72 | GO:0008237: metallopeptidase activity | 2.80E-02 |
| 73 | GO:0016887: ATPase activity | 3.10E-02 |
| 74 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 3.54E-02 |
| 75 | GO:0008168: methyltransferase activity | 3.76E-02 |
| 76 | GO:0005096: GTPase activator activity | 3.80E-02 |
| 77 | GO:0004222: metalloendopeptidase activity | 3.93E-02 |
| 78 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.76E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 5.71E-65 |
| 4 | GO:0009570: chloroplast stroma | 1.21E-44 |
| 5 | GO:0009941: chloroplast envelope | 2.38E-34 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 2.03E-33 |
| 7 | GO:0009579: thylakoid | 1.25E-30 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 3.75E-21 |
| 9 | GO:0005840: ribosome | 7.03E-18 |
| 10 | GO:0009534: chloroplast thylakoid | 1.28E-17 |
| 11 | GO:0031977: thylakoid lumen | 2.16E-15 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 5.68E-10 |
| 13 | GO:0019898: extrinsic component of membrane | 7.29E-09 |
| 14 | GO:0009523: photosystem II | 3.47E-07 |
| 15 | GO:0030095: chloroplast photosystem II | 8.62E-07 |
| 16 | GO:0031969: chloroplast membrane | 8.36E-06 |
| 17 | GO:0010007: magnesium chelatase complex | 9.47E-06 |
| 18 | GO:0009533: chloroplast stromal thylakoid | 1.67E-04 |
| 19 | GO:0009515: granal stacked thylakoid | 2.36E-04 |
| 20 | GO:0009547: plastid ribosome | 2.36E-04 |
| 21 | GO:0030093: chloroplast photosystem I | 5.24E-04 |
| 22 | GO:0080085: signal recognition particle, chloroplast targeting | 5.24E-04 |
| 23 | GO:0000311: plastid large ribosomal subunit | 5.84E-04 |
| 24 | GO:0009528: plastid inner membrane | 8.52E-04 |
| 25 | GO:0009509: chromoplast | 8.52E-04 |
| 26 | GO:0033281: TAT protein transport complex | 8.52E-04 |
| 27 | GO:0042651: thylakoid membrane | 1.12E-03 |
| 28 | GO:0015935: small ribosomal subunit | 1.23E-03 |
| 29 | GO:0009527: plastid outer membrane | 1.62E-03 |
| 30 | GO:0009706: chloroplast inner membrane | 2.38E-03 |
| 31 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.55E-03 |
| 32 | GO:0010319: stromule | 3.17E-03 |
| 33 | GO:0009295: nucleoid | 3.17E-03 |
| 34 | GO:0009536: plastid | 3.90E-03 |
| 35 | GO:0009707: chloroplast outer membrane | 4.64E-03 |
| 36 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 4.79E-03 |
| 37 | GO:0015934: large ribosomal subunit | 5.36E-03 |
| 38 | GO:0005763: mitochondrial small ribosomal subunit | 5.43E-03 |
| 39 | GO:0032040: small-subunit processome | 8.25E-03 |
| 40 | GO:0009508: plastid chromosome | 9.02E-03 |
| 41 | GO:0000312: plastid small ribosomal subunit | 9.82E-03 |
| 42 | GO:0009532: plastid stroma | 1.42E-02 |
| 43 | GO:0005778: peroxisomal membrane | 2.80E-02 |
| 44 | GO:0030529: intracellular ribonucleoprotein complex | 3.04E-02 |
| 45 | GO:0046658: anchored component of plasma membrane | 3.34E-02 |
| 46 | GO:0022626: cytosolic ribosome | 3.47E-02 |
| 47 | GO:0016020: membrane | 3.58E-02 |