Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G12610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042371: vitamin K biosynthetic process0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
4GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
5GO:0006223: uracil salvage0.00E+00
6GO:0033494: ferulate metabolic process0.00E+00
7GO:0016553: base conversion or substitution editing0.00E+00
8GO:0015805: S-adenosyl-L-methionine transport0.00E+00
9GO:0006412: translation1.65E-12
10GO:0032544: plastid translation1.10E-09
11GO:0009735: response to cytokinin6.80E-09
12GO:0042254: ribosome biogenesis8.29E-08
13GO:0010207: photosystem II assembly1.84E-06
14GO:0009831: plant-type cell wall modification involved in multidimensional cell growth9.01E-06
15GO:0015979: photosynthesis3.63E-05
16GO:0009828: plant-type cell wall loosening4.05E-05
17GO:0010027: thylakoid membrane organization5.72E-05
18GO:0006183: GTP biosynthetic process5.85E-05
19GO:0010143: cutin biosynthetic process6.59E-05
20GO:0009826: unidimensional cell growth9.53E-05
21GO:0042372: phylloquinone biosynthetic process1.83E-04
22GO:0009734: auxin-activated signaling pathway1.87E-04
23GO:0009926: auxin polar transport2.25E-04
24GO:0009772: photosynthetic electron transport in photosystem II2.39E-04
25GO:0042335: cuticle development2.64E-04
26GO:0000481: maturation of 5S rRNA2.99E-04
27GO:1904964: positive regulation of phytol biosynthetic process2.99E-04
28GO:0042759: long-chain fatty acid biosynthetic process2.99E-04
29GO:1902458: positive regulation of stomatal opening2.99E-04
30GO:0034337: RNA folding2.99E-04
31GO:0071588: hydrogen peroxide mediated signaling pathway2.99E-04
32GO:0010729: positive regulation of hydrogen peroxide biosynthetic process2.99E-04
33GO:0060627: regulation of vesicle-mediated transport2.99E-04
34GO:0043489: RNA stabilization2.99E-04
35GO:1904966: positive regulation of vitamin E biosynthetic process2.99E-04
36GO:0046520: sphingoid biosynthetic process2.99E-04
37GO:0010442: guard cell morphogenesis2.99E-04
38GO:0009409: response to cold3.00E-04
39GO:0046620: regulation of organ growth3.02E-04
40GO:0009664: plant-type cell wall organization3.27E-04
41GO:0010206: photosystem II repair4.46E-04
42GO:0009658: chloroplast organization5.98E-04
43GO:0048829: root cap development6.16E-04
44GO:0006949: syncytium formation6.16E-04
45GO:0001736: establishment of planar polarity6.55E-04
46GO:0071258: cellular response to gravity6.55E-04
47GO:1903426: regulation of reactive oxygen species biosynthetic process6.55E-04
48GO:0052541: plant-type cell wall cellulose metabolic process6.55E-04
49GO:0043255: regulation of carbohydrate biosynthetic process6.55E-04
50GO:0010115: regulation of abscisic acid biosynthetic process6.55E-04
51GO:1902326: positive regulation of chlorophyll biosynthetic process6.55E-04
52GO:0010541: acropetal auxin transport6.55E-04
53GO:0009773: photosynthetic electron transport in photosystem I7.11E-04
54GO:0010411: xyloglucan metabolic process7.66E-04
55GO:0006006: glucose metabolic process9.19E-04
56GO:0015840: urea transport1.06E-03
57GO:2001295: malonyl-CoA biosynthetic process1.06E-03
58GO:0051211: anisotropic cell growth1.06E-03
59GO:0090391: granum assembly1.06E-03
60GO:0006518: peptide metabolic process1.06E-03
61GO:0080055: low-affinity nitrate transport1.06E-03
62GO:0010160: formation of animal organ boundary1.06E-03
63GO:0006633: fatty acid biosynthetic process1.25E-03
64GO:0006833: water transport1.28E-03
65GO:0010025: wax biosynthetic process1.28E-03
66GO:0006986: response to unfolded protein1.52E-03
67GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.52E-03
68GO:0071484: cellular response to light intensity1.52E-03
69GO:0051085: chaperone mediated protein folding requiring cofactor1.52E-03
70GO:0051639: actin filament network formation1.52E-03
71GO:0006241: CTP biosynthetic process1.52E-03
72GO:0043481: anthocyanin accumulation in tissues in response to UV light1.52E-03
73GO:0006424: glutamyl-tRNA aminoacylation1.52E-03
74GO:1901332: negative regulation of lateral root development1.52E-03
75GO:0006165: nucleoside diphosphate phosphorylation1.52E-03
76GO:0006228: UTP biosynthetic process1.52E-03
77GO:0071555: cell wall organization1.58E-03
78GO:0042546: cell wall biogenesis1.69E-03
79GO:0003333: amino acid transmembrane transport1.72E-03
80GO:0010037: response to carbon dioxide2.04E-03
81GO:0015976: carbon utilization2.04E-03
82GO:0051764: actin crosslink formation2.04E-03
83GO:2000122: negative regulation of stomatal complex development2.04E-03
84GO:0009733: response to auxin2.04E-03
85GO:0044206: UMP salvage2.04E-03
86GO:0010236: plastoquinone biosynthetic process2.61E-03
87GO:0045038: protein import into chloroplast thylakoid membrane2.61E-03
88GO:0043097: pyrimidine nucleoside salvage2.61E-03
89GO:0000413: protein peptidyl-prolyl isomerization2.61E-03
90GO:0032543: mitochondrial translation2.61E-03
91GO:0048359: mucilage metabolic process involved in seed coat development2.61E-03
92GO:0009958: positive gravitropism2.81E-03
93GO:0042549: photosystem II stabilization3.22E-03
94GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.22E-03
95GO:0060918: auxin transport3.22E-03
96GO:0010337: regulation of salicylic acid metabolic process3.22E-03
97GO:0006206: pyrimidine nucleobase metabolic process3.22E-03
98GO:0009117: nucleotide metabolic process3.22E-03
99GO:0032502: developmental process3.70E-03
100GO:1901259: chloroplast rRNA processing3.87E-03
101GO:0009854: oxidative photosynthetic carbon pathway3.87E-03
102GO:0010019: chloroplast-nucleus signaling pathway3.87E-03
103GO:0009955: adaxial/abaxial pattern specification3.87E-03
104GO:0009612: response to mechanical stimulus3.87E-03
105GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.87E-03
106GO:0006694: steroid biosynthetic process3.87E-03
107GO:0009610: response to symbiotic fungus4.57E-03
108GO:0030497: fatty acid elongation4.57E-03
109GO:0010196: nonphotochemical quenching4.57E-03
110GO:0019745: pentacyclic triterpenoid biosynthetic process4.57E-03
111GO:0009645: response to low light intensity stimulus4.57E-03
112GO:0042742: defense response to bacterium5.15E-03
113GO:0006353: DNA-templated transcription, termination5.30E-03
114GO:2000070: regulation of response to water deprivation5.30E-03
115GO:0030091: protein repair5.30E-03
116GO:0042255: ribosome assembly5.30E-03
117GO:0032508: DNA duplex unwinding5.30E-03
118GO:0009627: systemic acquired resistance5.59E-03
119GO:0015995: chlorophyll biosynthetic process5.89E-03
120GO:0006869: lipid transport5.92E-03
121GO:0009808: lignin metabolic process6.08E-03
122GO:0009932: cell tip growth6.08E-03
123GO:0015996: chlorophyll catabolic process6.08E-03
124GO:0007186: G-protein coupled receptor signaling pathway6.08E-03
125GO:0009817: defense response to fungus, incompatible interaction6.53E-03
126GO:0030244: cellulose biosynthetic process6.53E-03
127GO:0016042: lipid catabolic process6.77E-03
128GO:0010311: lateral root formation6.86E-03
129GO:0015780: nucleotide-sugar transport6.89E-03
130GO:0009051: pentose-phosphate shunt, oxidative branch6.89E-03
131GO:0055085: transmembrane transport7.18E-03
132GO:0045490: pectin catabolic process7.38E-03
133GO:0009631: cold acclimation7.55E-03
134GO:0006865: amino acid transport7.91E-03
135GO:0043069: negative regulation of programmed cell death8.62E-03
136GO:0006032: chitin catabolic process8.62E-03
137GO:0018119: peptidyl-cysteine S-nitrosylation9.55E-03
138GO:0048765: root hair cell differentiation9.55E-03
139GO:0010015: root morphogenesis9.55E-03
140GO:0000038: very long-chain fatty acid metabolic process9.55E-03
141GO:0045037: protein import into chloroplast stroma1.05E-02
142GO:0008361: regulation of cell size1.05E-02
143GO:0016024: CDP-diacylglycerol biosynthetic process1.05E-02
144GO:0009640: photomorphogenesis1.07E-02
145GO:0019253: reductive pentose-phosphate cycle1.25E-02
146GO:0010540: basipetal auxin transport1.25E-02
147GO:0042538: hyperosmotic salinity response1.35E-02
148GO:0010053: root epidermal cell differentiation1.36E-02
149GO:0009825: multidimensional cell growth1.36E-02
150GO:0010167: response to nitrate1.36E-02
151GO:0009809: lignin biosynthetic process1.45E-02
152GO:0006071: glycerol metabolic process1.47E-02
153GO:0009414: response to water deprivation1.55E-02
154GO:0009116: nucleoside metabolic process1.58E-02
155GO:0000027: ribosomal large subunit assembly1.58E-02
156GO:0051017: actin filament bundle assembly1.58E-02
157GO:0009416: response to light stimulus1.68E-02
158GO:0010026: trichome differentiation1.69E-02
159GO:0016998: cell wall macromolecule catabolic process1.81E-02
160GO:0061077: chaperone-mediated protein folding1.81E-02
161GO:0009411: response to UV2.05E-02
162GO:0009306: protein secretion2.18E-02
163GO:0048443: stamen development2.18E-02
164GO:0006284: base-excision repair2.18E-02
165GO:0008033: tRNA processing2.44E-02
166GO:0034220: ion transmembrane transport2.44E-02
167GO:0080022: primary root development2.44E-02
168GO:0010182: sugar mediated signaling pathway2.57E-02
169GO:0015986: ATP synthesis coupled proton transport2.71E-02
170GO:0007018: microtubule-based movement2.71E-02
171GO:0016132: brassinosteroid biosynthetic process2.99E-02
172GO:0000302: response to reactive oxygen species2.99E-02
173GO:0002229: defense response to oomycetes2.99E-02
174GO:0009790: embryo development3.02E-02
175GO:0009630: gravitropism3.13E-02
176GO:0030163: protein catabolic process3.28E-02
177GO:0040008: regulation of growth3.40E-02
178GO:0009639: response to red or far red light3.42E-02
179GO:0016311: dephosphorylation4.52E-02
180GO:0018298: protein-chromophore linkage4.69E-02
RankGO TermAdjusted P value
1GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
2GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
3GO:0102245: lupan-3beta,20-diol synthase activity0.00E+00
4GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
5GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
6GO:0050614: delta24-sterol reductase activity0.00E+00
7GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
8GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
9GO:0008887: glycerate kinase activity0.00E+00
10GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
11GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
12GO:0019843: rRNA binding2.58E-18
13GO:0003735: structural constituent of ribosome7.96E-16
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.71E-06
15GO:0005528: FK506 binding3.93E-06
16GO:0010328: auxin influx transmembrane transporter activity5.85E-05
17GO:0051920: peroxiredoxin activity1.83E-04
18GO:0000170: sphingosine hydroxylase activity2.99E-04
19GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.99E-04
20GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.99E-04
21GO:0080132: fatty acid alpha-hydroxylase activity2.99E-04
22GO:0015200: methylammonium transmembrane transporter activity2.99E-04
23GO:0016209: antioxidant activity3.02E-04
24GO:0016762: xyloglucan:xyloglucosyl transferase activity3.87E-04
25GO:0016788: hydrolase activity, acting on ester bonds6.19E-04
26GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.55E-04
27GO:0003938: IMP dehydrogenase activity6.55E-04
28GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity6.55E-04
29GO:0042284: sphingolipid delta-4 desaturase activity6.55E-04
30GO:0016798: hydrolase activity, acting on glycosyl bonds7.66E-04
31GO:0008266: poly(U) RNA binding1.03E-03
32GO:0052689: carboxylic ester hydrolase activity1.04E-03
33GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.06E-03
34GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.06E-03
35GO:0042300: beta-amyrin synthase activity1.06E-03
36GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.06E-03
37GO:0080054: low-affinity nitrate transmembrane transporter activity1.06E-03
38GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.06E-03
39GO:0050734: hydroxycinnamoyltransferase activity1.06E-03
40GO:0004075: biotin carboxylase activity1.06E-03
41GO:0003993: acid phosphatase activity1.23E-03
42GO:0016851: magnesium chelatase activity1.52E-03
43GO:0004550: nucleoside diphosphate kinase activity1.52E-03
44GO:0042299: lupeol synthase activity1.52E-03
45GO:0043023: ribosomal large subunit binding1.52E-03
46GO:0008097: 5S rRNA binding1.52E-03
47GO:0035529: NADH pyrophosphatase activity1.52E-03
48GO:0015204: urea transmembrane transporter activity2.04E-03
49GO:0004659: prenyltransferase activity2.04E-03
50GO:0004845: uracil phosphoribosyltransferase activity2.04E-03
51GO:0010011: auxin binding2.04E-03
52GO:0004345: glucose-6-phosphate dehydrogenase activity2.04E-03
53GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.04E-03
54GO:0052793: pectin acetylesterase activity2.04E-03
55GO:0043495: protein anchor2.04E-03
56GO:0030570: pectate lyase activity2.05E-03
57GO:0003989: acetyl-CoA carboxylase activity2.61E-03
58GO:0008725: DNA-3-methyladenine glycosylase activity2.61E-03
59GO:0009922: fatty acid elongase activity2.61E-03
60GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.22E-03
61GO:0008519: ammonium transmembrane transporter activity3.22E-03
62GO:0016208: AMP binding3.22E-03
63GO:0004130: cytochrome-c peroxidase activity3.22E-03
64GO:0016462: pyrophosphatase activity3.22E-03
65GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.22E-03
66GO:0016688: L-ascorbate peroxidase activity3.22E-03
67GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.87E-03
68GO:0004849: uridine kinase activity3.87E-03
69GO:0019899: enzyme binding4.57E-03
70GO:0015250: water channel activity5.00E-03
71GO:0052747: sinapyl alcohol dehydrogenase activity5.30E-03
72GO:0016829: lyase activity5.41E-03
73GO:0008889: glycerophosphodiester phosphodiesterase activity6.89E-03
74GO:0047617: acyl-CoA hydrolase activity7.74E-03
75GO:0004568: chitinase activity8.62E-03
76GO:0050661: NADP binding9.45E-03
77GO:0045551: cinnamyl-alcohol dehydrogenase activity1.05E-02
78GO:0004089: carbonate dehydratase activity1.15E-02
79GO:0010329: auxin efflux transmembrane transporter activity1.15E-02
80GO:0008289: lipid binding1.17E-02
81GO:0015293: symporter activity1.20E-02
82GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.47E-02
83GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.47E-02
84GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.47E-02
85GO:0003690: double-stranded DNA binding1.50E-02
86GO:0003777: microtubule motor activity1.60E-02
87GO:0015171: amino acid transmembrane transporter activity1.60E-02
88GO:0051087: chaperone binding1.69E-02
89GO:0004707: MAP kinase activity1.81E-02
90GO:0004650: polygalacturonase activity1.88E-02
91GO:0022891: substrate-specific transmembrane transporter activity2.05E-02
92GO:0016746: transferase activity, transferring acyl groups2.12E-02
93GO:0003727: single-stranded RNA binding2.18E-02
94GO:0008514: organic anion transmembrane transporter activity2.18E-02
95GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.54E-02
96GO:0008080: N-acetyltransferase activity2.57E-02
97GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.57E-02
98GO:0004252: serine-type endopeptidase activity2.87E-02
99GO:0051015: actin filament binding3.28E-02
100GO:0016791: phosphatase activity3.42E-02
101GO:0005200: structural constituent of cytoskeleton3.58E-02
102GO:0016722: oxidoreductase activity, oxidizing metal ions3.58E-02
103GO:0008017: microtubule binding3.73E-02
104GO:0016168: chlorophyll binding4.04E-02
105GO:0030247: polysaccharide binding4.36E-02
106GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.51E-02
107GO:0008236: serine-type peptidase activity4.52E-02
108GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.69E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009570: chloroplast stroma4.20E-38
3GO:0009507: chloroplast3.26E-28
4GO:0009941: chloroplast envelope1.11E-27
5GO:0009579: thylakoid1.20E-25
6GO:0009535: chloroplast thylakoid membrane1.45E-18
7GO:0009543: chloroplast thylakoid lumen3.77E-15
8GO:0009534: chloroplast thylakoid5.26E-15
9GO:0031977: thylakoid lumen1.48E-14
10GO:0005840: ribosome4.59E-14
11GO:0009505: plant-type cell wall2.89E-11
12GO:0016020: membrane7.91E-10
13GO:0048046: apoplast1.12E-08
14GO:0005618: cell wall1.34E-07
15GO:0010319: stromule2.08E-06
16GO:0005576: extracellular region1.24E-05
17GO:0000311: plastid large ribosomal subunit4.41E-05
18GO:0031225: anchored component of membrane5.14E-05
19GO:0030095: chloroplast photosystem II6.59E-05
20GO:0009654: photosystem II oxygen evolving complex1.27E-04
21GO:0009547: plastid ribosome2.99E-04
22GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.99E-04
23GO:0009515: granal stacked thylakoid2.99E-04
24GO:0019898: extrinsic component of membrane3.54E-04
25GO:0046658: anchored component of plasma membrane4.51E-04
26GO:0000312: plastid small ribosomal subunit1.03E-03
27GO:0009506: plasmodesma1.04E-03
28GO:0009528: plastid inner membrane1.06E-03
29GO:0010007: magnesium chelatase complex1.06E-03
30GO:0032432: actin filament bundle1.52E-03
31GO:0042651: thylakoid membrane1.56E-03
32GO:0009527: plastid outer membrane2.04E-03
33GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.22E-03
34GO:0031969: chloroplast membrane3.91E-03
35GO:0009986: cell surface4.57E-03
36GO:0009533: chloroplast stromal thylakoid4.57E-03
37GO:0042807: central vacuole4.57E-03
38GO:0000326: protein storage vacuole6.08E-03
39GO:0045298: tubulin complex6.89E-03
40GO:0005763: mitochondrial small ribosomal subunit6.89E-03
41GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.89E-03
42GO:0008180: COP9 signalosome6.89E-03
43GO:0015934: large ribosomal subunit7.55E-03
44GO:0009536: plastid7.68E-03
45GO:0005884: actin filament9.55E-03
46GO:0032040: small-subunit processome1.05E-02
47GO:0005768: endosome1.34E-02
48GO:0022626: cytosolic ribosome1.58E-02
49GO:0005874: microtubule1.62E-02
50GO:0015935: small ribosomal subunit1.81E-02
51GO:0009532: plastid stroma1.81E-02
52GO:0005886: plasma membrane1.91E-02
53GO:0005871: kinesin complex2.31E-02
54GO:0009523: photosystem II2.85E-02
55GO:0005802: trans-Golgi network3.38E-02
56GO:0005778: peroxisomal membrane3.58E-02
57GO:0030529: intracellular ribonucleoprotein complex3.88E-02
58GO:0019005: SCF ubiquitin ligase complex4.69E-02
59GO:0009707: chloroplast outer membrane4.69E-02
60GO:0022627: cytosolic small ribosomal subunit4.70E-02
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Gene type



Gene DE type