GO Enrichment Analysis of Co-expressed Genes with
AT3G12360
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000731: DNA synthesis involved in DNA repair | 0.00E+00 |
| 2 | GO:0044376: RNA polymerase II complex import to nucleus | 3.00E-05 |
| 3 | GO:0009968: negative regulation of signal transduction | 3.00E-05 |
| 4 | GO:0043547: positive regulation of GTPase activity | 3.00E-05 |
| 5 | GO:0006422: aspartyl-tRNA aminoacylation | 3.00E-05 |
| 6 | GO:1990022: RNA polymerase III complex localization to nucleus | 3.00E-05 |
| 7 | GO:0009727: detection of ethylene stimulus | 7.58E-05 |
| 8 | GO:0002221: pattern recognition receptor signaling pathway | 7.58E-05 |
| 9 | GO:0015914: phospholipid transport | 7.58E-05 |
| 10 | GO:0000289: nuclear-transcribed mRNA poly(A) tail shortening | 1.32E-04 |
| 11 | GO:0009410: response to xenobiotic stimulus | 1.32E-04 |
| 12 | GO:0080142: regulation of salicylic acid biosynthetic process | 2.67E-04 |
| 13 | GO:0045116: protein neddylation | 3.42E-04 |
| 14 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 4.20E-04 |
| 15 | GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response | 5.02E-04 |
| 16 | GO:0016559: peroxisome fission | 6.76E-04 |
| 17 | GO:0006261: DNA-dependent DNA replication | 7.68E-04 |
| 18 | GO:0030148: sphingolipid biosynthetic process | 1.16E-03 |
| 19 | GO:0000266: mitochondrial fission | 1.27E-03 |
| 20 | GO:0000027: ribosomal large subunit assembly | 1.86E-03 |
| 21 | GO:0009863: salicylic acid mediated signaling pathway | 1.86E-03 |
| 22 | GO:0016575: histone deacetylation | 1.98E-03 |
| 23 | GO:0009814: defense response, incompatible interaction | 2.25E-03 |
| 24 | GO:0007131: reciprocal meiotic recombination | 2.25E-03 |
| 25 | GO:0030433: ubiquitin-dependent ERAD pathway | 2.25E-03 |
| 26 | GO:0071369: cellular response to ethylene stimulus | 2.38E-03 |
| 27 | GO:0042127: regulation of cell proliferation | 2.52E-03 |
| 28 | GO:0006284: base-excision repair | 2.52E-03 |
| 29 | GO:0008284: positive regulation of cell proliferation | 2.66E-03 |
| 30 | GO:0042742: defense response to bacterium | 2.66E-03 |
| 31 | GO:0010182: sugar mediated signaling pathway | 2.94E-03 |
| 32 | GO:0009749: response to glucose | 3.24E-03 |
| 33 | GO:0006623: protein targeting to vacuole | 3.24E-03 |
| 34 | GO:0015031: protein transport | 3.60E-03 |
| 35 | GO:0006886: intracellular protein transport | 3.75E-03 |
| 36 | GO:0010252: auxin homeostasis | 3.87E-03 |
| 37 | GO:0006904: vesicle docking involved in exocytosis | 4.03E-03 |
| 38 | GO:0006887: exocytosis | 6.94E-03 |
| 39 | GO:0009965: leaf morphogenesis | 7.96E-03 |
| 40 | GO:0006260: DNA replication | 8.38E-03 |
| 41 | GO:0009620: response to fungus | 1.09E-02 |
| 42 | GO:0009553: embryo sac development | 1.13E-02 |
| 43 | GO:0009790: embryo development | 1.51E-02 |
| 44 | GO:0009414: response to water deprivation | 1.57E-02 |
| 45 | GO:0009451: RNA modification | 1.73E-02 |
| 46 | GO:0007166: cell surface receptor signaling pathway | 1.87E-02 |
| 47 | GO:0008380: RNA splicing | 1.93E-02 |
| 48 | GO:0009617: response to bacterium | 1.93E-02 |
| 49 | GO:0006355: regulation of transcription, DNA-templated | 2.26E-02 |
| 50 | GO:0016192: vesicle-mediated transport | 2.81E-02 |
| 51 | GO:0044550: secondary metabolite biosynthetic process | 2.88E-02 |
| 52 | GO:0006468: protein phosphorylation | 3.52E-02 |
| 53 | GO:0006281: DNA repair | 3.58E-02 |
| 54 | GO:0006397: mRNA processing | 3.69E-02 |
| 55 | GO:0008152: metabolic process | 3.83E-02 |
| 56 | GO:0016310: phosphorylation | 3.94E-02 |
| 57 | GO:0009734: auxin-activated signaling pathway | 4.56E-02 |
| 58 | GO:0050832: defense response to fungus | 4.76E-02 |
| 59 | GO:0016567: protein ubiquitination | 4.87E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043916: DNA-7-methylguanine glycosylase activity | 0.00E+00 |
| 2 | GO:0052821: DNA-7-methyladenine glycosylase activity | 0.00E+00 |
| 3 | GO:0003905: alkylbase DNA N-glycosylase activity | 0.00E+00 |
| 4 | GO:0052822: DNA-3-methylguanine glycosylase activity | 0.00E+00 |
| 5 | GO:0000386: second spliceosomal transesterification activity | 3.00E-05 |
| 6 | GO:0004815: aspartate-tRNA ligase activity | 3.00E-05 |
| 7 | GO:0045140: inositol phosphoceramide synthase activity | 7.58E-05 |
| 8 | GO:0019781: NEDD8 activating enzyme activity | 7.58E-05 |
| 9 | GO:0052692: raffinose alpha-galactosidase activity | 1.32E-04 |
| 10 | GO:0004557: alpha-galactosidase activity | 1.32E-04 |
| 11 | GO:0004930: G-protein coupled receptor activity | 2.67E-04 |
| 12 | GO:0008725: DNA-3-methyladenine glycosylase activity | 3.42E-04 |
| 13 | GO:0008641: small protein activating enzyme activity | 3.42E-04 |
| 14 | GO:0036402: proteasome-activating ATPase activity | 4.20E-04 |
| 15 | GO:0008320: protein transmembrane transporter activity | 5.88E-04 |
| 16 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 7.68E-04 |
| 17 | GO:0008081: phosphoric diester hydrolase activity | 1.38E-03 |
| 18 | GO:0000175: 3'-5'-exoribonuclease activity | 1.38E-03 |
| 19 | GO:0004535: poly(A)-specific ribonuclease activity | 1.50E-03 |
| 20 | GO:0017025: TBP-class protein binding | 1.61E-03 |
| 21 | GO:0003887: DNA-directed DNA polymerase activity | 1.73E-03 |
| 22 | GO:0004407: histone deacetylase activity | 1.86E-03 |
| 23 | GO:0008408: 3'-5' exonuclease activity | 2.11E-03 |
| 24 | GO:0004540: ribonuclease activity | 2.11E-03 |
| 25 | GO:0003727: single-stranded RNA binding | 2.52E-03 |
| 26 | GO:0001085: RNA polymerase II transcription factor binding | 2.94E-03 |
| 27 | GO:0010181: FMN binding | 3.09E-03 |
| 28 | GO:0008375: acetylglucosaminyltransferase activity | 4.70E-03 |
| 29 | GO:0005096: GTPase activator activity | 5.41E-03 |
| 30 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 5.78E-03 |
| 31 | GO:0035091: phosphatidylinositol binding | 7.75E-03 |
| 32 | GO:0000166: nucleotide binding | 7.91E-03 |
| 33 | GO:0022857: transmembrane transporter activity | 1.11E-02 |
| 34 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.49E-02 |
| 35 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.62E-02 |
| 36 | GO:0005515: protein binding | 1.64E-02 |
| 37 | GO:0008194: UDP-glycosyltransferase activity | 1.85E-02 |
| 38 | GO:0042802: identical protein binding | 2.02E-02 |
| 39 | GO:0003682: chromatin binding | 2.42E-02 |
| 40 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 3.25E-02 |
| 41 | GO:0003924: GTPase activity | 3.58E-02 |
| 42 | GO:0016887: ATPase activity | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045335: phagocytic vesicle | 0.00E+00 |
| 2 | GO:0030014: CCR4-NOT complex | 3.00E-05 |
| 3 | GO:0043625: delta DNA polymerase complex | 3.00E-05 |
| 4 | GO:0070062: extracellular exosome | 1.97E-04 |
| 5 | GO:0030658: transport vesicle membrane | 1.97E-04 |
| 6 | GO:0005802: trans-Golgi network | 2.92E-04 |
| 7 | GO:0031597: cytosolic proteasome complex | 5.02E-04 |
| 8 | GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane | 5.88E-04 |
| 9 | GO:0031595: nuclear proteasome complex | 5.88E-04 |
| 10 | GO:0008540: proteasome regulatory particle, base subcomplex | 9.61E-04 |
| 11 | GO:0017119: Golgi transport complex | 1.06E-03 |
| 12 | GO:0005741: mitochondrial outer membrane | 2.11E-03 |
| 13 | GO:0005768: endosome | 2.33E-03 |
| 14 | GO:0000145: exocyst | 3.55E-03 |
| 15 | GO:0032580: Golgi cisterna membrane | 3.87E-03 |
| 16 | GO:0005778: peroxisomal membrane | 4.03E-03 |
| 17 | GO:0005667: transcription factor complex | 4.70E-03 |
| 18 | GO:0016021: integral component of membrane | 5.79E-03 |
| 19 | GO:0031902: late endosome membrane | 6.94E-03 |
| 20 | GO:0016020: membrane | 8.57E-03 |
| 21 | GO:0000502: proteasome complex | 9.03E-03 |
| 22 | GO:0005794: Golgi apparatus | 1.00E-02 |
| 23 | GO:0005681: spliceosomal complex | 1.02E-02 |
| 24 | GO:0010008: endosome membrane | 1.04E-02 |
| 25 | GO:0000139: Golgi membrane | 2.18E-02 |
| 26 | GO:0005789: endoplasmic reticulum membrane | 2.46E-02 |
| 27 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.48E-02 |
| 28 | GO:0005874: microtubule | 2.64E-02 |
| 29 | GO:0005887: integral component of plasma membrane | 4.44E-02 |