GO Enrichment Analysis of Co-expressed Genes with
AT3G12210
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0006223: uracil salvage | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0015979: photosynthesis | 4.49E-07 |
| 5 | GO:0009773: photosynthetic electron transport in photosystem I | 7.36E-07 |
| 6 | GO:0010190: cytochrome b6f complex assembly | 9.15E-06 |
| 7 | GO:0071482: cellular response to light stimulus | 3.09E-05 |
| 8 | GO:0009657: plastid organization | 3.09E-05 |
| 9 | GO:1904966: positive regulation of vitamin E biosynthetic process | 5.79E-05 |
| 10 | GO:1904964: positive regulation of phytol biosynthetic process | 5.79E-05 |
| 11 | GO:0006352: DNA-templated transcription, initiation | 6.78E-05 |
| 12 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.41E-04 |
| 13 | GO:0009662: etioplast organization | 1.41E-04 |
| 14 | GO:0010581: regulation of starch biosynthetic process | 2.40E-04 |
| 15 | GO:0006518: peptide metabolic process | 2.40E-04 |
| 16 | GO:0016556: mRNA modification | 3.49E-04 |
| 17 | GO:2001141: regulation of RNA biosynthetic process | 3.49E-04 |
| 18 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.49E-04 |
| 19 | GO:0044206: UMP salvage | 4.66E-04 |
| 20 | GO:0071483: cellular response to blue light | 4.66E-04 |
| 21 | GO:0010027: thylakoid membrane organization | 5.54E-04 |
| 22 | GO:0043097: pyrimidine nucleoside salvage | 5.92E-04 |
| 23 | GO:0080110: sporopollenin biosynthetic process | 5.92E-04 |
| 24 | GO:0006461: protein complex assembly | 5.92E-04 |
| 25 | GO:0018298: protein-chromophore linkage | 7.16E-04 |
| 26 | GO:0006206: pyrimidine nucleobase metabolic process | 7.24E-04 |
| 27 | GO:0042549: photosystem II stabilization | 7.24E-04 |
| 28 | GO:0009658: chloroplast organization | 7.34E-04 |
| 29 | GO:0030488: tRNA methylation | 8.63E-04 |
| 30 | GO:0009637: response to blue light | 8.97E-04 |
| 31 | GO:0010196: nonphotochemical quenching | 1.01E-03 |
| 32 | GO:0010114: response to red light | 1.14E-03 |
| 33 | GO:0019430: removal of superoxide radicals | 1.32E-03 |
| 34 | GO:0032544: plastid translation | 1.32E-03 |
| 35 | GO:0009051: pentose-phosphate shunt, oxidative branch | 1.48E-03 |
| 36 | GO:0006098: pentose-phosphate shunt | 1.48E-03 |
| 37 | GO:0000902: cell morphogenesis | 1.48E-03 |
| 38 | GO:0010380: regulation of chlorophyll biosynthetic process | 1.65E-03 |
| 39 | GO:0006535: cysteine biosynthetic process from serine | 1.83E-03 |
| 40 | GO:0006415: translational termination | 2.02E-03 |
| 41 | GO:0009073: aromatic amino acid family biosynthetic process | 2.02E-03 |
| 42 | GO:0043085: positive regulation of catalytic activity | 2.02E-03 |
| 43 | GO:0006006: glucose metabolic process | 2.41E-03 |
| 44 | GO:0006094: gluconeogenesis | 2.41E-03 |
| 45 | GO:0010207: photosystem II assembly | 2.62E-03 |
| 46 | GO:0006810: transport | 2.75E-03 |
| 47 | GO:0090351: seedling development | 2.82E-03 |
| 48 | GO:0019344: cysteine biosynthetic process | 3.26E-03 |
| 49 | GO:0009116: nucleoside metabolic process | 3.26E-03 |
| 50 | GO:0009695: jasmonic acid biosynthetic process | 3.49E-03 |
| 51 | GO:0009768: photosynthesis, light harvesting in photosystem I | 3.49E-03 |
| 52 | GO:0061077: chaperone-mediated protein folding | 3.72E-03 |
| 53 | GO:0031408: oxylipin biosynthetic process | 3.72E-03 |
| 54 | GO:0010584: pollen exine formation | 4.44E-03 |
| 55 | GO:0016117: carotenoid biosynthetic process | 4.69E-03 |
| 56 | GO:0042335: cuticle development | 4.95E-03 |
| 57 | GO:0032502: developmental process | 6.31E-03 |
| 58 | GO:0001666: response to hypoxia | 7.78E-03 |
| 59 | GO:0042128: nitrate assimilation | 8.40E-03 |
| 60 | GO:0045454: cell redox homeostasis | 8.40E-03 |
| 61 | GO:0009817: defense response to fungus, incompatible interaction | 9.36E-03 |
| 62 | GO:0009407: toxin catabolic process | 1.00E-02 |
| 63 | GO:0010218: response to far red light | 1.00E-02 |
| 64 | GO:0008152: metabolic process | 1.14E-02 |
| 65 | GO:0009636: response to toxic substance | 1.44E-02 |
| 66 | GO:0006855: drug transmembrane transport | 1.47E-02 |
| 67 | GO:0009735: response to cytokinin | 1.69E-02 |
| 68 | GO:0006096: glycolytic process | 1.84E-02 |
| 69 | GO:0042744: hydrogen peroxide catabolic process | 2.70E-02 |
| 70 | GO:0016036: cellular response to phosphate starvation | 2.94E-02 |
| 71 | GO:0040008: regulation of growth | 2.99E-02 |
| 72 | GO:0009739: response to gibberellin | 3.35E-02 |
| 73 | GO:0045944: positive regulation of transcription from RNA polymerase II promoter | 4.00E-02 |
| 74 | GO:0055114: oxidation-reduction process | 4.29E-02 |
| 75 | GO:0009723: response to ethylene | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046608: carotenoid isomerase activity | 0.00E+00 |
| 2 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 3 | GO:0016987: sigma factor activity | 3.53E-06 |
| 4 | GO:0001053: plastid sigma factor activity | 3.53E-06 |
| 5 | GO:0004321: fatty-acyl-CoA synthase activity | 5.79E-05 |
| 6 | GO:0050017: L-3-cyanoalanine synthase activity | 1.41E-04 |
| 7 | GO:0016149: translation release factor activity, codon specific | 3.49E-04 |
| 8 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 4.66E-04 |
| 9 | GO:0043495: protein anchor | 4.66E-04 |
| 10 | GO:0004845: uracil phosphoribosyltransferase activity | 4.66E-04 |
| 11 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 4.66E-04 |
| 12 | GO:0016168: chlorophyll binding | 5.85E-04 |
| 13 | GO:0004332: fructose-bisphosphate aldolase activity | 7.24E-04 |
| 14 | GO:0004124: cysteine synthase activity | 8.63E-04 |
| 15 | GO:0004849: uridine kinase activity | 8.63E-04 |
| 16 | GO:0019899: enzyme binding | 1.01E-03 |
| 17 | GO:0004033: aldo-keto reductase (NADP) activity | 1.16E-03 |
| 18 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.23E-03 |
| 19 | GO:0016207: 4-coumarate-CoA ligase activity | 1.48E-03 |
| 20 | GO:0003747: translation release factor activity | 1.48E-03 |
| 21 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.52E-03 |
| 22 | GO:0008047: enzyme activator activity | 1.83E-03 |
| 23 | GO:0016874: ligase activity | 2.02E-03 |
| 24 | GO:0047372: acylglycerol lipase activity | 2.02E-03 |
| 25 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 2.62E-03 |
| 26 | GO:0031409: pigment binding | 3.04E-03 |
| 27 | GO:0005528: FK506 binding | 3.26E-03 |
| 28 | GO:0051536: iron-sulfur cluster binding | 3.26E-03 |
| 29 | GO:0043424: protein histidine kinase binding | 3.49E-03 |
| 30 | GO:0022891: substrate-specific transmembrane transporter activity | 4.20E-03 |
| 31 | GO:0004791: thioredoxin-disulfide reductase activity | 5.48E-03 |
| 32 | GO:0050662: coenzyme binding | 5.48E-03 |
| 33 | GO:0048038: quinone binding | 6.02E-03 |
| 34 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 6.59E-03 |
| 35 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 9.03E-03 |
| 36 | GO:0015238: drug transmembrane transporter activity | 9.69E-03 |
| 37 | GO:0004222: metalloendopeptidase activity | 1.00E-02 |
| 38 | GO:0009055: electron carrier activity | 1.11E-02 |
| 39 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.14E-02 |
| 40 | GO:0050661: NADP binding | 1.21E-02 |
| 41 | GO:0004364: glutathione transferase activity | 1.28E-02 |
| 42 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.47E-02 |
| 43 | GO:0030170: pyridoxal phosphate binding | 2.65E-02 |
| 44 | GO:0015297: antiporter activity | 2.99E-02 |
| 45 | GO:0005525: GTP binding | 3.04E-02 |
| 46 | GO:0005509: calcium ion binding | 3.45E-02 |
| 47 | GO:0042802: identical protein binding | 3.67E-02 |
| 48 | GO:0003824: catalytic activity | 4.09E-02 |
| 49 | GO:0008168: methyltransferase activity | 4.11E-02 |
| 50 | GO:0004601: peroxidase activity | 4.22E-02 |
| 51 | GO:0016491: oxidoreductase activity | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.55E-21 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.40E-17 |
| 3 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.24E-09 |
| 4 | GO:0009570: chloroplast stroma | 4.02E-07 |
| 5 | GO:0009654: photosystem II oxygen evolving complex | 3.31E-06 |
| 6 | GO:0009579: thylakoid | 8.99E-06 |
| 7 | GO:0009523: photosystem II | 1.20E-05 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 1.71E-05 |
| 9 | GO:0009941: chloroplast envelope | 5.44E-05 |
| 10 | GO:0031977: thylakoid lumen | 7.15E-05 |
| 11 | GO:0030095: chloroplast photosystem II | 1.06E-04 |
| 12 | GO:0042651: thylakoid membrane | 1.69E-04 |
| 13 | GO:0019898: extrinsic component of membrane | 3.61E-04 |
| 14 | GO:0046658: anchored component of plasma membrane | 6.05E-04 |
| 15 | GO:0009534: chloroplast thylakoid | 7.10E-04 |
| 16 | GO:0009533: chloroplast stromal thylakoid | 1.01E-03 |
| 17 | GO:0009539: photosystem II reaction center | 1.32E-03 |
| 18 | GO:0030076: light-harvesting complex | 2.82E-03 |
| 19 | GO:0009522: photosystem I | 5.48E-03 |
| 20 | GO:0031969: chloroplast membrane | 7.02E-03 |
| 21 | GO:0009536: plastid | 1.01E-02 |
| 22 | GO:0010287: plastoglobule | 2.37E-02 |
| 23 | GO:0031225: anchored component of membrane | 2.88E-02 |
| 24 | GO:0016021: integral component of membrane | 3.41E-02 |