co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G12040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0039694: viral RNA genome replication	0.00E+00
2	GO:0006805: xenobiotic metabolic process	1.13E-05
3	GO:0010541: acropetal auxin transport	3.00E-05
4	GO:0002221: pattern recognition receptor signaling pathway	3.00E-05
5	GO:0015914: phospholipid transport	3.00E-05
6	GO:0001676: long-chain fatty acid metabolic process	8.23E-05
7	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	1.14E-04
8	GO:0080142: regulation of salicylic acid biosynthetic process	1.14E-04
9	GO:0034613: cellular protein localization	1.14E-04
10	GO:0045116: protein neddylation	1.49E-04
11	GO:0009636: response to toxic substance	1.70E-04
12	GO:0006751: glutathione catabolic process	1.86E-04
13	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.25E-04
14	GO:0009414: response to water deprivation	5.60E-04
15	GO:0010105: negative regulation of ethylene-activated signaling pathway	5.89E-04
16	GO:0009617: response to bacterium	6.01E-04
17	GO:0016575: histone deacetylation	9.08E-04
18	GO:0007131: reciprocal meiotic recombination	1.02E-03
19	GO:0006886: intracellular protein transport	1.15E-03
20	GO:0010501: RNA secondary structure unwinding	1.26E-03
21	GO:0042391: regulation of membrane potential	1.26E-03
22	GO:0006623: protein targeting to vacuole	1.46E-03
23	GO:0010193: response to ozone	1.52E-03
24	GO:0010252: auxin homeostasis	1.73E-03
25	GO:0009817: defense response to fungus, incompatible interaction	2.32E-03
26	GO:0009407: toxin catabolic process	2.48E-03
27	GO:0048527: lateral root development	2.56E-03
28	GO:0006631: fatty acid metabolic process	3.06E-03
29	GO:0009965: leaf morphogenesis	3.50E-03
30	GO:0009626: plant-type hypersensitive response	4.63E-03
31	GO:0042742: defense response to bacterium	4.78E-03
32	GO:0009624: response to nematode	5.03E-03
33	GO:0006396: RNA processing	5.13E-03
34	GO:0000398: mRNA splicing, via spliceosome	5.55E-03
35	GO:0015031: protein transport	6.06E-03
36	GO:0009845: seed germination	6.20E-03
37	GO:0007166: cell surface receptor signaling pathway	8.05E-03
38	GO:0008380: RNA splicing	8.30E-03
39	GO:0016192: vesicle-mediated transport	1.20E-02
40	GO:0006281: DNA repair	1.53E-02
41	GO:0006397: mRNA processing	1.57E-02
42	GO:0009651: response to salt stress	1.61E-02
43	GO:0009873: ethylene-activated signaling pathway	1.83E-02
44	GO:0009734: auxin-activated signaling pathway	1.95E-02
45	GO:0009735: response to cytokinin	2.15E-02
46	GO:0009409: response to cold	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0019781: NEDD8 activating enzyme activity	3.00E-05
2	GO:0038199: ethylene receptor activity	3.00E-05
3	GO:0003840: gamma-glutamyltransferase activity	5.40E-05
4	GO:0036374: glutathione hydrolase activity	5.40E-05
5	GO:0051740: ethylene binding	8.23E-05
6	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	8.23E-05
7	GO:0008641: small protein activating enzyme activity	1.49E-04
8	GO:0102391: decanoate--CoA ligase activity	2.25E-04
9	GO:0008320: protein transmembrane transporter activity	2.66E-04
10	GO:0043295: glutathione binding	2.66E-04
11	GO:0004467: long-chain fatty acid-CoA ligase activity	2.66E-04
12	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.52E-04
13	GO:0004673: protein histidine kinase activity	4.91E-04
14	GO:0000155: phosphorelay sensor kinase activity	6.40E-04
15	GO:0030552: cAMP binding	7.45E-04
16	GO:0030553: cGMP binding	7.45E-04
17	GO:0004407: histone deacetylase activity	8.54E-04
18	GO:0005216: ion channel activity	9.08E-04
19	GO:0005249: voltage-gated potassium channel activity	1.26E-03
20	GO:0030551: cyclic nucleotide binding	1.26E-03
21	GO:0004872: receptor activity	1.46E-03
22	GO:0004004: ATP-dependent RNA helicase activity	2.17E-03
23	GO:0000166: nucleotide binding	2.38E-03
24	GO:0004364: glutathione transferase activity	3.14E-03
25	GO:0016746: transferase activity, transferring acyl groups	5.13E-03
26	GO:0008026: ATP-dependent helicase activity	5.24E-03
27	GO:0004386: helicase activity	5.34E-03
28	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	6.99E-03
29	GO:0003676: nucleic acid binding	1.97E-02
30	GO:0005507: copper ion binding	2.95E-02
31	GO:0005516: calmodulin binding	3.07E-02
32	GO:0005525: GTP binding	3.27E-02
33	GO:0005509: calcium ion binding	3.58E-02
34	GO:0003723: RNA binding	3.74E-02
35	GO:0016491: oxidoreductase activity	4.62E-02
36	GO:0005524: ATP binding	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0019034: viral replication complex	0.00E+00
2	GO:0046861: glyoxysomal membrane	5.40E-05
3	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.66E-04
4	GO:0009514: glyoxysome	3.52E-04
5	GO:0017119: Golgi transport complex	4.91E-04
6	GO:0043234: protein complex	7.99E-04
7	GO:0005789: endoplasmic reticulum membrane	9.73E-04
8	GO:0032580: Golgi cisterna membrane	1.73E-03
9	GO:0005887: integral component of plasma membrane	1.83E-03
10	GO:0030529: intracellular ribonucleoprotein complex	1.95E-03
11	GO:0000932: P-body	1.95E-03
12	GO:0031902: late endosome membrane	3.06E-03
13	GO:0005681: spliceosomal complex	4.43E-03
14	GO:0016607: nuclear speck	4.53E-03
15	GO:0005886: plasma membrane	6.35E-03
16	GO:0000139: Golgi membrane	6.46E-03
17	GO:0005759: mitochondrial matrix	6.87E-03
18	GO:0016021: integral component of membrane	8.71E-03
19	GO:0005777: peroxisome	2.53E-02
20	GO:0005773: vacuole	2.55E-02
21	GO:0016020: membrane	2.60E-02
22	GO:0005802: trans-Golgi network	3.21E-02
23	GO:0005768: endosome	3.52E-02