co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G11400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044843: cell cycle G1/S phase transition	0.00E+00
2	GO:0071731: response to nitric oxide	0.00E+00
3	GO:0055129: L-proline biosynthetic process	2.58E-05
4	GO:0010372: positive regulation of gibberellin biosynthetic process	2.58E-05
5	GO:0015865: purine nucleotide transport	2.58E-05
6	GO:0006412: translation	7.12E-05
7	GO:0046902: regulation of mitochondrial membrane permeability	7.16E-05
8	GO:0006561: proline biosynthetic process	1.63E-04
9	GO:0000741: karyogamy	1.63E-04
10	GO:0009423: chorismate biosynthetic process	1.98E-04
11	GO:0006458: 'de novo' protein folding	1.98E-04
12	GO:0006402: mRNA catabolic process	2.72E-04
13	GO:0009651: response to salt stress	2.91E-04
14	GO:0001558: regulation of cell growth	3.11E-04
15	GO:0007338: single fertilization	3.51E-04
16	GO:0010162: seed dormancy process	4.35E-04
17	GO:0006913: nucleocytoplasmic transport	4.78E-04
18	GO:0009073: aromatic amino acid family biosynthetic process	4.78E-04
19	GO:0034605: cellular response to heat	6.14E-04
20	GO:0009944: polarity specification of adaxial/abaxial axis	7.58E-04
21	GO:0046686: response to cadmium ion	7.88E-04
22	GO:0051302: regulation of cell division	8.07E-04
23	GO:0061077: chaperone-mediated protein folding	8.59E-04
24	GO:0007005: mitochondrion organization	9.08E-04
25	GO:0009294: DNA mediated transformation	9.61E-04
26	GO:0009306: protein secretion	1.01E-03
27	GO:0010197: polar nucleus fusion	1.18E-03
28	GO:0031047: gene silencing by RNA	1.41E-03
29	GO:0009567: double fertilization forming a zygote and endosperm	1.53E-03
30	GO:0009735: response to cytokinin	1.82E-03
31	GO:0016049: cell growth	1.98E-03
32	GO:0048527: lateral root development	2.26E-03
33	GO:0006099: tricarboxylic acid cycle	2.48E-03
34	GO:0000154: rRNA modification	3.08E-03
35	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.24E-03
36	GO:0006364: rRNA processing	3.49E-03
37	GO:0009553: embryo sac development	4.34E-03
38	GO:0006810: transport	5.81E-03
39	GO:0006413: translational initiation	6.15E-03
40	GO:0042254: ribosome biogenesis	8.86E-03
41	GO:0009723: response to ethylene	9.69E-03
42	GO:0045892: negative regulation of transcription, DNA-templated	1.17E-02
43	GO:0009408: response to heat	1.34E-02
44	GO:0006397: mRNA processing	1.38E-02
45	GO:0009734: auxin-activated signaling pathway	1.71E-02
46	GO:0009555: pollen development	2.01E-02
47	GO:0051301: cell division	2.14E-02
48	GO:0055085: transmembrane transport	2.38E-02
49	GO:0006457: protein folding	2.42E-02
50	GO:0006511: ubiquitin-dependent protein catabolic process	2.50E-02
51	GO:0009733: response to auxin	3.61E-02

Rank	GO Term	Adjusted P value
1	GO:0004735: pyrroline-5-carboxylate reductase activity	0.00E+00
2	GO:0004107: chorismate synthase activity	0.00E+00
3	GO:0048037: cofactor binding	9.64E-06
4	GO:0004776: succinate-CoA ligase (GDP-forming) activity	2.58E-05
5	GO:0004775: succinate-CoA ligase (ADP-forming) activity	2.58E-05
6	GO:0003729: mRNA binding	7.18E-05
7	GO:0003735: structural constituent of ribosome	1.21E-04
8	GO:0005471: ATP:ADP antiporter activity	1.30E-04
9	GO:0031369: translation initiation factor binding	1.63E-04
10	GO:0008235: metalloexopeptidase activity	2.34E-04
11	GO:0030515: snoRNA binding	2.34E-04
12	GO:0051082: unfolded protein binding	2.44E-04
13	GO:0044183: protein binding involved in protein folding	4.78E-04
14	GO:0004407: histone deacetylase activity	7.58E-04
15	GO:0010181: FMN binding	1.23E-03
16	GO:0004518: nuclease activity	1.41E-03
17	GO:0003746: translation elongation factor activity	2.40E-03
18	GO:0005507: copper ion binding	2.80E-03
19	GO:0019843: rRNA binding	5.17E-03
20	GO:0003723: RNA binding	5.92E-03
21	GO:0003743: translation initiation factor activity	7.19E-03
22	GO:0003924: GTPase activity	1.34E-02
23	GO:0003676: nucleic acid binding	1.63E-02
24	GO:0000166: nucleotide binding	2.01E-02
25	GO:0005516: calmodulin binding	2.69E-02

Rank	GO Term	Adjusted P value
1	GO:0005832: chaperonin-containing T-complex	0.00E+00
2	GO:0005730: nucleolus	1.77E-07
3	GO:0005618: cell wall	2.33E-06
4	GO:0016442: RISC complex	9.64E-06
5	GO:0031428: box C/D snoRNP complex	1.63E-04
6	GO:0005774: vacuolar membrane	3.06E-04
7	GO:0010494: cytoplasmic stress granule	3.51E-04
8	GO:0005740: mitochondrial envelope	4.35E-04
9	GO:0048471: perinuclear region of cytoplasm	4.78E-04
10	GO:0005852: eukaryotic translation initiation factor 3 complex	4.78E-04
11	GO:0032040: small-subunit processome	5.23E-04
12	GO:0022625: cytosolic large ribosomal subunit	8.29E-04
13	GO:0005829: cytosol	1.57E-03
14	GO:0030529: intracellular ribonucleoprotein complex	1.72E-03
15	GO:0000932: P-body	1.72E-03
16	GO:0022626: cytosolic ribosome	1.90E-03
17	GO:0015934: large ribosomal subunit	2.26E-03
18	GO:0005622: intracellular	3.49E-03
19	GO:0005773: vacuole	3.63E-03
20	GO:0005635: nuclear envelope	3.65E-03
21	GO:0005739: mitochondrion	3.70E-03
22	GO:0005747: mitochondrial respiratory chain complex I	3.99E-03
23	GO:0005840: ribosome	4.15E-03
24	GO:0005759: mitochondrial matrix	6.05E-03
25	GO:0005737: cytoplasm	7.04E-03
26	GO:0022627: cytosolic small ribosomal subunit	7.84E-03
27	GO:0005743: mitochondrial inner membrane	1.27E-02
28	GO:0009536: plastid	3.85E-02
29	GO:0009507: chloroplast	4.79E-02