Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G10840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009106: lipoate metabolic process0.00E+00
2GO:0090393: sepal giant cell development0.00E+00
3GO:0015882: L-ascorbic acid transport0.00E+00
4GO:0009249: protein lipoylation0.00E+00
5GO:0015822: ornithine transport0.00E+00
6GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
7GO:0005996: monosaccharide metabolic process0.00E+00
8GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
9GO:0019253: reductive pentose-phosphate cycle5.51E-09
10GO:0019464: glycine decarboxylation via glycine cleavage system1.38E-07
11GO:0006546: glycine catabolic process1.38E-07
12GO:0010275: NAD(P)H dehydrogenase complex assembly1.81E-06
13GO:0071482: cellular response to light stimulus3.95E-06
14GO:0018119: peptidyl-cysteine S-nitrosylation1.30E-05
15GO:0009107: lipoate biosynthetic process4.56E-05
16GO:0006810: transport5.48E-05
17GO:0046686: response to cadmium ion6.68E-05
18GO:0016117: carotenoid biosynthetic process9.94E-05
19GO:0052543: callose deposition in cell wall1.59E-04
20GO:0048564: photosystem I assembly1.59E-04
21GO:0006659: phosphatidylserine biosynthetic process1.95E-04
22GO:0080093: regulation of photorespiration1.95E-04
23GO:0000066: mitochondrial ornithine transport1.95E-04
24GO:0031998: regulation of fatty acid beta-oxidation1.95E-04
25GO:0010028: xanthophyll cycle1.95E-04
26GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process1.95E-04
27GO:0006352: DNA-templated transcription, initiation3.91E-04
28GO:0000272: polysaccharide catabolic process3.91E-04
29GO:0019684: photosynthesis, light reaction3.91E-04
30GO:0080183: response to photooxidative stress4.38E-04
31GO:0030388: fructose 1,6-bisphosphate metabolic process4.38E-04
32GO:0010270: photosystem II oxygen evolving complex assembly4.38E-04
33GO:0046482: para-aminobenzoic acid metabolic process4.38E-04
34GO:0009767: photosynthetic electron transport chain5.09E-04
35GO:0005986: sucrose biosynthetic process5.09E-04
36GO:0006696: ergosterol biosynthetic process7.14E-04
37GO:0005977: glycogen metabolic process7.14E-04
38GO:0006011: UDP-glucose metabolic process7.14E-04
39GO:0000913: preprophase band assembly7.14E-04
40GO:0031022: nuclear migration along microfilament7.14E-04
41GO:0006000: fructose metabolic process7.14E-04
42GO:0016556: mRNA modification1.02E-03
43GO:2001141: regulation of RNA biosynthetic process1.02E-03
44GO:0032877: positive regulation of DNA endoreduplication1.02E-03
45GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.02E-03
46GO:0009052: pentose-phosphate shunt, non-oxidative branch1.02E-03
47GO:0033014: tetrapyrrole biosynthetic process1.02E-03
48GO:0080092: regulation of pollen tube growth1.04E-03
49GO:0009658: chloroplast organization1.10E-03
50GO:0006096: glycolytic process1.33E-03
51GO:0006021: inositol biosynthetic process1.35E-03
52GO:0071483: cellular response to blue light1.35E-03
53GO:0009902: chloroplast relocation1.35E-03
54GO:0006542: glutamine biosynthetic process1.35E-03
55GO:0019676: ammonia assimilation cycle1.35E-03
56GO:0015743: malate transport1.35E-03
57GO:0045727: positive regulation of translation1.35E-03
58GO:0009735: response to cytokinin1.36E-03
59GO:0042631: cellular response to water deprivation1.42E-03
60GO:0006814: sodium ion transport1.65E-03
61GO:0016120: carotene biosynthetic process1.72E-03
62GO:0009904: chloroplast accumulation movement1.72E-03
63GO:0043097: pyrimidine nucleoside salvage1.72E-03
64GO:0010236: plastoquinone biosynthetic process1.72E-03
65GO:0006097: glyoxylate cycle1.72E-03
66GO:1902183: regulation of shoot apical meristem development1.72E-03
67GO:0016123: xanthophyll biosynthetic process1.72E-03
68GO:0006206: pyrimidine nucleobase metabolic process2.12E-03
69GO:0009635: response to herbicide2.12E-03
70GO:0010942: positive regulation of cell death2.12E-03
71GO:0042549: photosystem II stabilization2.12E-03
72GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.12E-03
73GO:0070814: hydrogen sulfide biosynthetic process2.12E-03
74GO:0009920: cell plate formation involved in plant-type cell wall biogenesis2.12E-03
75GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.12E-03
76GO:0017148: negative regulation of translation2.54E-03
77GO:0009099: valine biosynthetic process2.54E-03
78GO:0009903: chloroplast avoidance movement2.54E-03
79GO:0009854: oxidative photosynthetic carbon pathway2.54E-03
80GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity2.54E-03
81GO:0009082: branched-chain amino acid biosynthetic process2.54E-03
82GO:0042026: protein refolding2.54E-03
83GO:0006458: 'de novo' protein folding2.54E-03
84GO:0000105: histidine biosynthetic process3.47E-03
85GO:0016559: peroxisome fission3.47E-03
86GO:0008610: lipid biosynthetic process3.47E-03
87GO:0009097: isoleucine biosynthetic process3.97E-03
88GO:0006526: arginine biosynthetic process3.97E-03
89GO:0032544: plastid translation3.97E-03
90GO:0006002: fructose 6-phosphate metabolic process3.97E-03
91GO:0006075: (1->3)-beta-D-glucan biosynthetic process3.97E-03
92GO:0009657: plastid organization3.97E-03
93GO:0009853: photorespiration4.47E-03
94GO:0006783: heme biosynthetic process4.49E-03
95GO:0009056: catabolic process4.49E-03
96GO:0098656: anion transmembrane transport4.49E-03
97GO:2000024: regulation of leaf development4.49E-03
98GO:0006779: porphyrin-containing compound biosynthetic process5.04E-03
99GO:0006839: mitochondrial transport5.09E-03
100GO:0042742: defense response to bacterium5.48E-03
101GO:0000103: sulfate assimilation5.61E-03
102GO:0010192: mucilage biosynthetic process5.61E-03
103GO:0051555: flavonol biosynthetic process5.61E-03
104GO:0009970: cellular response to sulfate starvation5.61E-03
105GO:0006535: cysteine biosynthetic process from serine5.61E-03
106GO:0009744: response to sucrose5.76E-03
107GO:0006415: translational termination6.20E-03
108GO:0009773: photosynthetic electron transport in photosystem I6.20E-03
109GO:0006108: malate metabolic process7.44E-03
110GO:0006006: glucose metabolic process7.44E-03
111GO:0006094: gluconeogenesis7.44E-03
112GO:0080167: response to karrikin7.69E-03
113GO:0010207: photosystem II assembly8.10E-03
114GO:0090351: seedling development8.77E-03
115GO:0007031: peroxisome organization8.77E-03
116GO:0042343: indole glucosinolate metabolic process8.77E-03
117GO:0015979: photosynthesis9.11E-03
118GO:0009409: response to cold9.28E-03
119GO:0009833: plant-type primary cell wall biogenesis9.46E-03
120GO:0000162: tryptophan biosynthetic process9.46E-03
121GO:0006289: nucleotide-excision repair1.02E-02
122GO:0019344: cysteine biosynthetic process1.02E-02
123GO:0009944: polarity specification of adaxial/abaxial axis1.02E-02
124GO:0098542: defense response to other organism1.17E-02
125GO:0061077: chaperone-mediated protein folding1.17E-02
126GO:0006730: one-carbon metabolic process1.24E-02
127GO:0016226: iron-sulfur cluster assembly1.24E-02
128GO:0008152: metabolic process1.43E-02
129GO:0048868: pollen tube development1.65E-02
130GO:0008360: regulation of cell shape1.65E-02
131GO:0007018: microtubule-based movement1.74E-02
132GO:0007059: chromosome segregation1.74E-02
133GO:0019252: starch biosynthetic process1.83E-02
134GO:0008654: phospholipid biosynthetic process1.83E-02
135GO:0009791: post-embryonic development1.83E-02
136GO:0007623: circadian rhythm1.92E-02
137GO:0055114: oxidation-reduction process1.97E-02
138GO:0007264: small GTPase mediated signal transduction2.01E-02
139GO:0010583: response to cyclopentenone2.01E-02
140GO:0016032: viral process2.01E-02
141GO:0010090: trichome morphogenesis2.11E-02
142GO:0010286: heat acclimation2.30E-02
143GO:0051607: defense response to virus2.40E-02
144GO:0000910: cytokinesis2.40E-02
145GO:0009416: response to light stimulus2.61E-02
146GO:0042128: nitrate assimilation2.70E-02
147GO:0048481: plant ovule development3.02E-02
148GO:0009817: defense response to fungus, incompatible interaction3.02E-02
149GO:0030244: cellulose biosynthetic process3.02E-02
150GO:0009832: plant-type cell wall biogenesis3.12E-02
151GO:0009407: toxin catabolic process3.23E-02
152GO:0007049: cell cycle3.31E-02
153GO:0007568: aging3.34E-02
154GO:0005975: carbohydrate metabolic process3.53E-02
155GO:0016051: carbohydrate biosynthetic process3.57E-02
156GO:0006099: tricarboxylic acid cycle3.68E-02
157GO:0046777: protein autophosphorylation3.93E-02
158GO:0006631: fatty acid metabolic process4.03E-02
159GO:0009636: response to toxic substance4.64E-02
RankGO TermAdjusted P value
1GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
2GO:0008974: phosphoribulokinase activity0.00E+00
3GO:0015229: L-ascorbic acid transporter activity0.00E+00
4GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
5GO:0046905: phytoene synthase activity0.00E+00
6GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
7GO:0008465: glycerate dehydrogenase activity0.00E+00
8GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
9GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
10GO:0004358: glutamate N-acetyltransferase activity0.00E+00
11GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
12GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
13GO:0016719: carotene 7,8-desaturase activity0.00E+00
14GO:0019144: ADP-sugar diphosphatase activity0.00E+00
15GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
16GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
17GO:0004375: glycine dehydrogenase (decarboxylating) activity4.71E-08
18GO:0001053: plastid sigma factor activity2.82E-05
19GO:0016987: sigma factor activity2.82E-05
20GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity9.36E-05
21GO:0003984: acetolactate synthase activity1.95E-04
22GO:0004325: ferrochelatase activity1.95E-04
23GO:0051996: squalene synthase activity1.95E-04
24GO:0010313: phytochrome binding1.95E-04
25GO:0080042: ADP-glucose pyrophosphohydrolase activity1.95E-04
26GO:0005089: Rho guanyl-nucleotide exchange factor activity3.91E-04
27GO:0004512: inositol-3-phosphate synthase activity4.38E-04
28GO:0015367: oxoglutarate:malate antiporter activity4.38E-04
29GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.38E-04
30GO:0004310: farnesyl-diphosphate farnesyltransferase activity4.38E-04
31GO:0050017: L-3-cyanoalanine synthase activity4.38E-04
32GO:0010291: carotene beta-ring hydroxylase activity4.38E-04
33GO:0017118: lipoyltransferase activity4.38E-04
34GO:0080041: ADP-ribose pyrophosphohydrolase activity4.38E-04
35GO:0004618: phosphoglycerate kinase activity4.38E-04
36GO:0010297: heteropolysaccharide binding4.38E-04
37GO:0004326: tetrahydrofolylpolyglutamate synthase activity4.38E-04
38GO:0016415: octanoyltransferase activity4.38E-04
39GO:0004047: aminomethyltransferase activity4.38E-04
40GO:0047215: indole-3-acetate beta-glucosyltransferase activity4.38E-04
41GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.38E-04
42GO:0080002: UDP-glucose:4-aminobenzoate acylglucosyltransferase activity4.38E-04
43GO:0000064: L-ornithine transmembrane transporter activity4.38E-04
44GO:0004802: transketolase activity4.38E-04
45GO:0030385: ferredoxin:thioredoxin reductase activity4.38E-04
46GO:0008194: UDP-glycosyltransferase activity6.77E-04
47GO:0004751: ribose-5-phosphate isomerase activity7.14E-04
48GO:0004781: sulfate adenylyltransferase (ATP) activity7.14E-04
49GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity7.14E-04
50GO:0070330: aromatase activity7.14E-04
51GO:0016992: lipoate synthase activity7.14E-04
52GO:0032947: protein complex scaffold7.14E-04
53GO:0004148: dihydrolipoyl dehydrogenase activity7.14E-04
54GO:0050307: sucrose-phosphate phosphatase activity7.14E-04
55GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.02E-03
56GO:0008508: bile acid:sodium symporter activity1.02E-03
57GO:0001872: (1->3)-beta-D-glucan binding1.02E-03
58GO:0048027: mRNA 5'-UTR binding1.02E-03
59GO:0016149: translation release factor activity, codon specific1.02E-03
60GO:0004737: pyruvate decarboxylase activity1.35E-03
61GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.35E-03
62GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.35E-03
63GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.35E-03
64GO:0080043: quercetin 3-O-glucosyltransferase activity1.50E-03
65GO:0080044: quercetin 7-O-glucosyltransferase activity1.50E-03
66GO:0018685: alkane 1-monooxygenase activity1.72E-03
67GO:0004356: glutamate-ammonia ligase activity1.72E-03
68GO:0010294: abscisic acid glucosyltransferase activity1.72E-03
69GO:0008374: O-acyltransferase activity1.72E-03
70GO:0004518: nuclease activity2.01E-03
71GO:0102229: amylopectin maltohydrolase activity2.12E-03
72GO:0042578: phosphoric ester hydrolase activity2.12E-03
73GO:0016615: malate dehydrogenase activity2.12E-03
74GO:0030976: thiamine pyrophosphate binding2.12E-03
75GO:0080030: methyl indole-3-acetate esterase activity2.12E-03
76GO:0000210: NAD+ diphosphatase activity2.12E-03
77GO:0016161: beta-amylase activity2.54E-03
78GO:0030060: L-malate dehydrogenase activity2.54E-03
79GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.54E-03
80GO:0004124: cysteine synthase activity2.54E-03
81GO:0004849: uridine kinase activity2.54E-03
82GO:0043295: glutathione binding3.00E-03
83GO:0003843: 1,3-beta-D-glucan synthase activity3.97E-03
84GO:0003747: translation release factor activity4.49E-03
85GO:0044183: protein binding involved in protein folding6.20E-03
86GO:0004860: protein kinase inhibitor activity6.20E-03
87GO:0005198: structural molecule activity6.46E-03
88GO:0051287: NAD binding6.97E-03
89GO:0005315: inorganic phosphate transmembrane transporter activity7.44E-03
90GO:0031072: heat shock protein binding7.44E-03
91GO:0004565: beta-galactosidase activity7.44E-03
92GO:0008081: phosphoric diester hydrolase activity7.44E-03
93GO:0003899: DNA-directed 5'-3' RNA polymerase activity7.75E-03
94GO:0008266: poly(U) RNA binding8.10E-03
95GO:0005515: protein binding9.54E-03
96GO:0051536: iron-sulfur cluster binding1.02E-02
97GO:0005528: FK506 binding1.02E-02
98GO:0051082: unfolded protein binding1.11E-02
99GO:0035251: UDP-glucosyltransferase activity1.17E-02
100GO:0016760: cellulose synthase (UDP-forming) activity1.32E-02
101GO:0019843: rRNA binding1.39E-02
102GO:0008514: organic anion transmembrane transporter activity1.40E-02
103GO:0003756: protein disulfide isomerase activity1.40E-02
104GO:0016757: transferase activity, transferring glycosyl groups1.65E-02
105GO:0005509: calcium ion binding1.69E-02
106GO:0050662: coenzyme binding1.74E-02
107GO:0019901: protein kinase binding1.83E-02
108GO:0005506: iron ion binding1.87E-02
109GO:0048038: quinone binding1.92E-02
110GO:0016787: hydrolase activity2.04E-02
111GO:0016759: cellulose synthase activity2.20E-02
112GO:0008483: transaminase activity2.30E-02
113GO:0016597: amino acid binding2.40E-02
114GO:0009931: calcium-dependent protein serine/threonine kinase activity2.70E-02
115GO:0030247: polysaccharide binding2.80E-02
116GO:0004683: calmodulin-dependent protein kinase activity2.80E-02
117GO:0000287: magnesium ion binding2.91E-02
118GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.23E-02
119GO:0004222: metalloendopeptidase activity3.23E-02
120GO:0050897: cobalt ion binding3.34E-02
121GO:0050660: flavin adenine dinucleotide binding3.43E-02
122GO:0051539: 4 iron, 4 sulfur cluster binding3.92E-02
123GO:0050661: NADP binding3.92E-02
124GO:0019825: oxygen binding4.04E-02
125GO:0004364: glutathione transferase activity4.15E-02
126GO:0051537: 2 iron, 2 sulfur cluster binding4.52E-02
127GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.77E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0042579: microbody0.00E+00
3GO:0009507: chloroplast2.79E-37
4GO:0009570: chloroplast stroma1.98E-15
5GO:0009941: chloroplast envelope6.84E-15
6GO:0009535: chloroplast thylakoid membrane1.60E-12
7GO:0005960: glycine cleavage complex4.71E-08
8GO:0009579: thylakoid1.59E-07
9GO:0010319: stromule4.09E-07
10GO:0009654: photosystem II oxygen evolving complex1.29E-06
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.55E-06
12GO:0048046: apoplast1.35E-05
13GO:0030095: chloroplast photosystem II2.52E-05
14GO:0009543: chloroplast thylakoid lumen3.68E-05
15GO:0009534: chloroplast thylakoid1.11E-04
16GO:0019898: extrinsic component of membrane1.53E-04
17GO:0031969: chloroplast membrane2.85E-04
18GO:0000427: plastid-encoded plastid RNA polymerase complex4.38E-04
19GO:0009509: chromoplast7.14E-04
20GO:0009706: chloroplast inner membrane1.68E-03
21GO:0055035: plastid thylakoid membrane1.72E-03
22GO:0010287: plastoglobule2.09E-03
23GO:0009840: chloroplastic endopeptidase Clp complex2.54E-03
24GO:0000148: 1,3-beta-D-glucan synthase complex3.97E-03
25GO:0005779: integral component of peroxisomal membrane3.97E-03
26GO:0009539: photosystem II reaction center3.97E-03
27GO:0005819: spindle4.88E-03
28GO:0016324: apical plasma membrane5.61E-03
29GO:0048471: perinuclear region of cytoplasm6.20E-03
30GO:0005765: lysosomal membrane6.20E-03
31GO:0009508: plastid chromosome7.44E-03
32GO:0019013: viral nucleocapsid7.44E-03
33GO:0009536: plastid7.81E-03
34GO:0005777: peroxisome8.13E-03
35GO:0005623: cell1.42E-02
36GO:0043231: intracellular membrane-bounded organelle1.43E-02
37GO:0009524: phragmoplast1.46E-02
38GO:0005871: kinesin complex1.48E-02
39GO:0009523: photosystem II1.83E-02
40GO:0009504: cell plate1.83E-02
41GO:0005829: cytosol1.98E-02
42GO:0005694: chromosome2.01E-02
43GO:0005778: peroxisomal membrane2.30E-02
44GO:0009295: nucleoid2.30E-02
45GO:0046658: anchored component of plasma membrane2.54E-02
46GO:0009707: chloroplast outer membrane3.02E-02
47GO:0031902: late endosome membrane4.03E-02
48GO:0031977: thylakoid lumen4.03E-02
49GO:0005856: cytoskeleton4.64E-02
<
Gene type



Gene DE type