Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G09630

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0044843: cell cycle G1/S phase transition0.00E+00
2GO:0043461: proton-transporting ATP synthase complex assembly0.00E+00
3GO:0006412: translation4.36E-55
4GO:0042254: ribosome biogenesis1.05E-08
5GO:0009735: response to cytokinin3.04E-07
6GO:0006364: rRNA processing7.91E-07
7GO:0042274: ribosomal small subunit biogenesis1.16E-06
8GO:0006407: rRNA export from nucleus3.00E-05
9GO:0000494: box C/D snoRNA 3'-end processing3.00E-05
10GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.00E-05
11GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.00E-05
12GO:1990258: histone glutamine methylation3.00E-05
13GO:0000027: ribosomal large subunit assembly5.95E-05
14GO:0040007: growth9.13E-05
15GO:0002181: cytoplasmic translation1.32E-04
16GO:0042256: mature ribosome assembly1.32E-04
17GO:0032502: developmental process1.75E-04
18GO:0071493: cellular response to UV-B3.42E-04
19GO:0031167: rRNA methylation3.42E-04
20GO:0001731: formation of translation preinitiation complex4.20E-04
21GO:0009955: adaxial/abaxial pattern specification5.02E-04
22GO:0000028: ribosomal small subunit assembly6.76E-04
23GO:0001558: regulation of cell growth7.68E-04
24GO:0001510: RNA methylation7.68E-04
25GO:0006820: anion transport1.27E-03
26GO:0006626: protein targeting to mitochondrion1.38E-03
27GO:0010229: inflorescence development1.38E-03
28GO:0006446: regulation of translational initiation1.50E-03
29GO:0030150: protein import into mitochondrial matrix1.86E-03
30GO:0051302: regulation of cell division1.98E-03
31GO:0008033: tRNA processing2.80E-03
32GO:0009791: post-embryonic development3.24E-03
33GO:0006811: ion transport5.60E-03
34GO:0010043: response to zinc ion5.78E-03
35GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process8.38E-03
36GO:0010224: response to UV-B9.25E-03
37GO:0009620: response to fungus1.09E-02
38GO:0009651: response to salt stress1.23E-02
39GO:0009409: response to cold2.18E-02
40GO:0006970: response to osmotic stress2.45E-02
41GO:0009793: embryo development ending in seed dormancy3.72E-02
42GO:0009734: auxin-activated signaling pathway4.56E-02
RankGO TermAdjusted P value
1GO:0003735: structural constituent of ribosome2.91E-57
2GO:0003729: mRNA binding2.35E-17
3GO:1990259: histone-glutamine methyltransferase activity3.00E-05
4GO:0003723: RNA binding1.11E-04
5GO:0008649: rRNA methyltransferase activity1.32E-04
6GO:0008235: metalloexopeptidase activity5.88E-04
7GO:0030515: snoRNA binding5.88E-04
8GO:0015288: porin activity6.76E-04
9GO:0008308: voltage-gated anion channel activity7.68E-04
10GO:0019843: rRNA binding1.18E-03
11GO:0015266: protein channel activity1.38E-03
12GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity5.23E-03
13GO:0003743: translation initiation factor activity1.90E-02
RankGO TermAdjusted P value
1GO:0022626: cytosolic ribosome1.97E-54
2GO:0022625: cytosolic large ribosomal subunit5.82E-37
3GO:0005730: nucleolus1.32E-27
4GO:0022627: cytosolic small ribosomal subunit7.85E-25
5GO:0005840: ribosome5.55E-22
6GO:0009506: plasmodesma1.55E-20
7GO:0015934: large ribosomal subunit2.71E-18
8GO:0016020: membrane1.61E-13
9GO:0005737: cytoplasm7.90E-13
10GO:0005829: cytosol6.35E-11
11GO:0005774: vacuolar membrane1.36E-10
12GO:0030686: 90S preribosome3.00E-05
13GO:0005773: vacuole3.81E-05
14GO:0015935: small ribosomal subunit7.45E-05
15GO:0005886: plasma membrane3.19E-04
16GO:0016282: eukaryotic 43S preinitiation complex4.20E-04
17GO:0031428: box C/D snoRNP complex4.20E-04
18GO:0033290: eukaryotic 48S preinitiation complex5.02E-04
19GO:0046930: pore complex7.68E-04
20GO:0005742: mitochondrial outer membrane translocase complex7.68E-04
21GO:0015030: Cajal body9.61E-04
22GO:0032040: small-subunit processome1.27E-03
23GO:0005741: mitochondrial outer membrane2.11E-03
24GO:0005622: intracellular2.26E-03
25GO:0005618: cell wall3.38E-03
26GO:0016592: mediator complex3.55E-03
27GO:0009507: chloroplast4.17E-03
28GO:0030529: intracellular ribonucleoprotein complex4.36E-03
29GO:0005743: mitochondrial inner membrane3.40E-02
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Gene type



Gene DE type