Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G09050

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061635: regulation of protein complex stability0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0090042: tubulin deacetylation0.00E+00
5GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
6GO:0006399: tRNA metabolic process0.00E+00
7GO:0002184: cytoplasmic translational termination0.00E+00
8GO:0009773: photosynthetic electron transport in photosystem I7.96E-09
9GO:0015979: photosynthesis2.00E-08
10GO:0032544: plastid translation1.26E-07
11GO:1902326: positive regulation of chlorophyll biosynthetic process3.83E-06
12GO:0008152: metabolic process1.20E-05
13GO:0010027: thylakoid membrane organization5.21E-05
14GO:0010025: wax biosynthetic process8.67E-05
15GO:0045038: protein import into chloroplast thylakoid membrane8.74E-05
16GO:0006655: phosphatidylglycerol biosynthetic process1.27E-04
17GO:0042549: photosystem II stabilization1.27E-04
18GO:0006614: SRP-dependent cotranslational protein targeting to membrane2.27E-04
19GO:0010196: nonphotochemical quenching2.27E-04
20GO:0009451: RNA modification2.54E-04
21GO:0043489: RNA stabilization2.89E-04
22GO:1904966: positive regulation of vitamin E biosynthetic process2.89E-04
23GO:1904964: positive regulation of phytol biosynthetic process2.89E-04
24GO:0071588: hydrogen peroxide mediated signaling pathway2.89E-04
25GO:0008654: phospholipid biosynthetic process3.32E-04
26GO:0009657: plastid organization3.53E-04
27GO:0071482: cellular response to light stimulus3.53E-04
28GO:0042761: very long-chain fatty acid biosynthetic process5.03E-04
29GO:0009658: chloroplast organization5.47E-04
30GO:0016560: protein import into peroxisome matrix, docking6.34E-04
31GO:0009662: etioplast organization6.34E-04
32GO:1904143: positive regulation of carotenoid biosynthetic process6.34E-04
33GO:0030388: fructose 1,6-bisphosphate metabolic process6.34E-04
34GO:0010270: photosystem II oxygen evolving complex assembly6.34E-04
35GO:0010275: NAD(P)H dehydrogenase complex assembly6.34E-04
36GO:0043085: positive regulation of catalytic activity6.77E-04
37GO:0006352: DNA-templated transcription, initiation6.77E-04
38GO:0015995: chlorophyll biosynthetic process7.20E-04
39GO:0018298: protein-chromophore linkage8.19E-04
40GO:0006094: gluconeogenesis8.76E-04
41GO:0009767: photosynthetic electron transport chain8.76E-04
42GO:0006000: fructose metabolic process1.03E-03
43GO:0010581: regulation of starch biosynthetic process1.03E-03
44GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.03E-03
45GO:0051604: protein maturation1.03E-03
46GO:0030865: cortical cytoskeleton organization1.03E-03
47GO:0000913: preprophase band assembly1.03E-03
48GO:0009052: pentose-phosphate shunt, non-oxidative branch1.47E-03
49GO:0016556: mRNA modification1.47E-03
50GO:0055070: copper ion homeostasis1.47E-03
51GO:2001141: regulation of RNA biosynthetic process1.47E-03
52GO:0006515: misfolded or incompletely synthesized protein catabolic process1.47E-03
53GO:0009152: purine ribonucleotide biosynthetic process1.47E-03
54GO:0046653: tetrahydrofolate metabolic process1.47E-03
55GO:0009768: photosynthesis, light harvesting in photosystem I1.49E-03
56GO:0031408: oxylipin biosynthetic process1.64E-03
57GO:0016226: iron-sulfur cluster assembly1.79E-03
58GO:0006546: glycine catabolic process1.97E-03
59GO:0071483: cellular response to blue light1.97E-03
60GO:0010021: amylopectin biosynthetic process1.97E-03
61GO:0051781: positive regulation of cell division1.97E-03
62GO:0006661: phosphatidylinositol biosynthetic process1.97E-03
63GO:0006109: regulation of carbohydrate metabolic process1.97E-03
64GO:0045727: positive regulation of translation1.97E-03
65GO:0015994: chlorophyll metabolic process1.97E-03
66GO:0000304: response to singlet oxygen2.52E-03
67GO:0006564: L-serine biosynthetic process2.52E-03
68GO:0035434: copper ion transmembrane transport2.52E-03
69GO:0006461: protein complex assembly2.52E-03
70GO:0009107: lipoate biosynthetic process2.52E-03
71GO:0006828: manganese ion transport3.11E-03
72GO:0010190: cytochrome b6f complex assembly3.11E-03
73GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.11E-03
74GO:0000470: maturation of LSU-rRNA3.11E-03
75GO:0016554: cytidine to uridine editing3.11E-03
76GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.74E-03
77GO:1901259: chloroplast rRNA processing3.74E-03
78GO:0030488: tRNA methylation3.74E-03
79GO:0010019: chloroplast-nucleus signaling pathway3.74E-03
80GO:0009645: response to low light intensity stimulus4.41E-03
81GO:0006400: tRNA modification4.41E-03
82GO:0015693: magnesium ion transport4.41E-03
83GO:0009772: photosynthetic electron transport in photosystem II4.41E-03
84GO:0045454: cell redox homeostasis4.77E-03
85GO:0008610: lipid biosynthetic process5.12E-03
86GO:0009642: response to light intensity5.12E-03
87GO:0006605: protein targeting5.12E-03
88GO:0042744: hydrogen peroxide catabolic process5.42E-03
89GO:0019430: removal of superoxide radicals5.87E-03
90GO:0006002: fructose 6-phosphate metabolic process5.87E-03
91GO:0006098: pentose-phosphate shunt6.65E-03
92GO:0000373: Group II intron splicing6.65E-03
93GO:0009051: pentose-phosphate shunt, oxidative branch6.65E-03
94GO:0006457: protein folding6.81E-03
95GO:0009631: cold acclimation7.19E-03
96GO:1900865: chloroplast RNA modification7.48E-03
97GO:0010380: regulation of chlorophyll biosynthetic process7.48E-03
98GO:0009637: response to blue light7.88E-03
99GO:0034599: cellular response to oxidative stress8.24E-03
100GO:0006535: cysteine biosynthetic process from serine8.33E-03
101GO:0045036: protein targeting to chloroplast8.33E-03
102GO:0009073: aromatic amino acid family biosynthetic process9.22E-03
103GO:0006415: translational termination9.22E-03
104GO:0016485: protein processing9.22E-03
105GO:0006816: calcium ion transport9.22E-03
106GO:0016024: CDP-diacylglycerol biosynthetic process1.01E-02
107GO:0010114: response to red light1.02E-02
108GO:0010628: positive regulation of gene expression1.11E-02
109GO:0006006: glucose metabolic process1.11E-02
110GO:0005986: sucrose biosynthetic process1.11E-02
111GO:0006855: drug transmembrane transport1.19E-02
112GO:0010207: photosystem II assembly1.21E-02
113GO:0019253: reductive pentose-phosphate cycle1.21E-02
114GO:0010143: cutin biosynthetic process1.21E-02
115GO:0005985: sucrose metabolic process1.31E-02
116GO:0090351: seedling development1.31E-02
117GO:0009735: response to cytokinin1.37E-02
118GO:0006364: rRNA processing1.38E-02
119GO:0019344: cysteine biosynthetic process1.52E-02
120GO:0006418: tRNA aminoacylation for protein translation1.63E-02
121GO:0009695: jasmonic acid biosynthetic process1.63E-02
122GO:0006096: glycolytic process1.63E-02
123GO:0016575: histone deacetylation1.63E-02
124GO:0048316: seed development1.68E-02
125GO:0035428: hexose transmembrane transport1.86E-02
126GO:0040007: growth1.98E-02
127GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.98E-02
128GO:0016117: carotenoid biosynthetic process2.23E-02
129GO:0006869: lipid transport2.24E-02
130GO:0000226: microtubule cytoskeleton organization2.35E-02
131GO:0042335: cuticle development2.35E-02
132GO:0080022: primary root development2.35E-02
133GO:0000413: protein peptidyl-prolyl isomerization2.35E-02
134GO:0032259: methylation2.46E-02
135GO:0006662: glycerol ether metabolic process2.48E-02
136GO:0009409: response to cold2.48E-02
137GO:0046323: glucose import2.48E-02
138GO:0009741: response to brassinosteroid2.48E-02
139GO:0006814: sodium ion transport2.61E-02
140GO:0009646: response to absence of light2.61E-02
141GO:0019252: starch biosynthetic process2.75E-02
142GO:0000302: response to reactive oxygen species2.88E-02
143GO:0055114: oxidation-reduction process3.00E-02
144GO:0016032: viral process3.02E-02
145GO:0032502: developmental process3.02E-02
146GO:0009828: plant-type cell wall loosening3.31E-02
147GO:0071805: potassium ion transmembrane transport3.45E-02
148GO:0001666: response to hypoxia3.75E-02
149GO:0042128: nitrate assimilation4.05E-02
150GO:0009817: defense response to fungus, incompatible interaction4.53E-02
151GO:0048481: plant ovule development4.53E-02
152GO:0006412: translation4.68E-02
153GO:0009407: toxin catabolic process4.85E-02
154GO:0010218: response to far red light4.85E-02
RankGO TermAdjusted P value
1GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
2GO:0051721: protein phosphatase 2A binding0.00E+00
3GO:0042903: tubulin deacetylase activity0.00E+00
4GO:0004822: isoleucine-tRNA ligase activity0.00E+00
5GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
6GO:0043014: alpha-tubulin binding0.00E+00
7GO:0046408: chlorophyll synthetase activity0.00E+00
8GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
9GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
10GO:0005048: signal sequence binding0.00E+00
11GO:0046608: carotenoid isomerase activity0.00E+00
12GO:0019843: rRNA binding8.43E-07
13GO:0001053: plastid sigma factor activity5.52E-05
14GO:0016987: sigma factor activity5.52E-05
15GO:0008266: poly(U) RNA binding6.11E-05
16GO:0005525: GTP binding2.44E-04
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.68E-04
18GO:0017169: CDP-alcohol phosphatidyltransferase activity2.89E-04
19GO:0009496: plastoquinol--plastocyanin reductase activity2.89E-04
20GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.89E-04
21GO:0004321: fatty-acyl-CoA synthase activity2.89E-04
22GO:0005080: protein kinase C binding2.89E-04
23GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.89E-04
24GO:0050139: nicotinate-N-glucosyltransferase activity2.89E-04
25GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity2.89E-04
26GO:0008047: enzyme activator activity5.88E-04
27GO:0016168: chlorophyll binding6.29E-04
28GO:0000774: adenyl-nucleotide exchange factor activity6.34E-04
29GO:0016630: protochlorophyllide reductase activity6.34E-04
30GO:0050017: L-3-cyanoalanine synthase activity6.34E-04
31GO:0047746: chlorophyllase activity6.34E-04
32GO:0004617: phosphoglycerate dehydrogenase activity6.34E-04
33GO:0004047: aminomethyltransferase activity6.34E-04
34GO:0033201: alpha-1,4-glucan synthase activity6.34E-04
35GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.34E-04
36GO:0015095: magnesium ion transmembrane transporter activity8.76E-04
37GO:0016787: hydrolase activity8.98E-04
38GO:0019829: cation-transporting ATPase activity1.03E-03
39GO:0016992: lipoate synthase activity1.03E-03
40GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.03E-03
41GO:0002161: aminoacyl-tRNA editing activity1.03E-03
42GO:0004751: ribose-5-phosphate isomerase activity1.03E-03
43GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.03E-03
44GO:0008864: formyltetrahydrofolate deformylase activity1.03E-03
45GO:0016531: copper chaperone activity1.03E-03
46GO:0004373: glycogen (starch) synthase activity1.03E-03
47GO:0031409: pigment binding1.22E-03
48GO:0051536: iron-sulfur cluster binding1.35E-03
49GO:0005528: FK506 binding1.35E-03
50GO:0048487: beta-tubulin binding1.47E-03
51GO:0016149: translation release factor activity, codon specific1.47E-03
52GO:0043023: ribosomal large subunit binding1.47E-03
53GO:0008508: bile acid:sodium symporter activity1.47E-03
54GO:0015079: potassium ion transmembrane transporter activity1.49E-03
55GO:0004519: endonuclease activity1.83E-03
56GO:0003723: RNA binding1.89E-03
57GO:0009011: starch synthase activity1.97E-03
58GO:0043495: protein anchor1.97E-03
59GO:0004345: glucose-6-phosphate dehydrogenase activity1.97E-03
60GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.97E-03
61GO:0004045: aminoacyl-tRNA hydrolase activity1.97E-03
62GO:0003959: NADPH dehydrogenase activity2.52E-03
63GO:0004791: thioredoxin-disulfide reductase activity2.87E-03
64GO:0004130: cytochrome-c peroxidase activity3.11E-03
65GO:0016688: L-ascorbate peroxidase activity3.11E-03
66GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.11E-03
67GO:0004605: phosphatidate cytidylyltransferase activity3.11E-03
68GO:0004332: fructose-bisphosphate aldolase activity3.11E-03
69GO:0051082: unfolded protein binding3.45E-03
70GO:0004124: cysteine synthase activity3.74E-03
71GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.75E-03
72GO:0019899: enzyme binding4.41E-03
73GO:0004620: phospholipase activity4.41E-03
74GO:0004033: aldo-keto reductase (NADP) activity5.12E-03
75GO:0043022: ribosome binding5.12E-03
76GO:0008312: 7S RNA binding5.12E-03
77GO:0005375: copper ion transmembrane transporter activity5.87E-03
78GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.87E-03
79GO:0008236: serine-type peptidase activity5.91E-03
80GO:0016740: transferase activity6.14E-03
81GO:0015238: drug transmembrane transporter activity6.53E-03
82GO:0003747: translation release factor activity6.65E-03
83GO:0016207: 4-coumarate-CoA ligase activity6.65E-03
84GO:0005384: manganese ion transmembrane transporter activity7.48E-03
85GO:0015386: potassium:proton antiporter activity9.22E-03
86GO:0047372: acylglycerol lipase activity9.22E-03
87GO:0042626: ATPase activity, coupled to transmembrane movement of substances9.40E-03
88GO:0000049: tRNA binding1.01E-02
89GO:0051537: 2 iron, 2 sulfur cluster binding1.10E-02
90GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.11E-02
91GO:0004022: alcohol dehydrogenase (NAD) activity1.11E-02
92GO:0031072: heat shock protein binding1.11E-02
93GO:0009982: pseudouridine synthase activity1.11E-02
94GO:0008168: methyltransferase activity1.15E-02
95GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.21E-02
96GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.38E-02
97GO:0004857: enzyme inhibitor activity1.52E-02
98GO:0004407: histone deacetylase activity1.52E-02
99GO:0051087: chaperone binding1.63E-02
100GO:0043424: protein histidine kinase binding1.63E-02
101GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.68E-02
102GO:0004176: ATP-dependent peptidase activity1.75E-02
103GO:0005215: transporter activity1.76E-02
104GO:0080043: quercetin 3-O-glucosyltransferase activity1.79E-02
105GO:0080044: quercetin 7-O-glucosyltransferase activity1.79E-02
106GO:0016874: ligase activity1.85E-02
107GO:0022891: substrate-specific transmembrane transporter activity1.98E-02
108GO:0047134: protein-disulfide reductase activity2.23E-02
109GO:0004812: aminoacyl-tRNA ligase activity2.23E-02
110GO:0005355: glucose transmembrane transporter activity2.61E-02
111GO:0050662: coenzyme binding2.61E-02
112GO:0009055: electron carrier activity2.83E-02
113GO:0046872: metal ion binding2.85E-02
114GO:0015297: antiporter activity3.24E-02
115GO:0016791: phosphatase activity3.31E-02
116GO:0016597: amino acid binding3.60E-02
117GO:0008194: UDP-glycosyltransferase activity3.79E-02
118GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.37E-02
119GO:0003735: structural constituent of ribosome4.67E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0043233: organelle lumen0.00E+00
3GO:0009507: chloroplast6.16E-65
4GO:0009535: chloroplast thylakoid membrane8.77E-30
5GO:0009941: chloroplast envelope1.30E-24
6GO:0009570: chloroplast stroma1.64E-24
7GO:0009534: chloroplast thylakoid2.44E-20
8GO:0009579: thylakoid1.77E-16
9GO:0031969: chloroplast membrane1.65E-12
10GO:0009543: chloroplast thylakoid lumen8.13E-11
11GO:0031977: thylakoid lumen2.64E-08
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.45E-05
13GO:0009533: chloroplast stromal thylakoid2.27E-04
14GO:0009547: plastid ribosome2.89E-04
15GO:0009782: photosystem I antenna complex2.89E-04
16GO:0009523: photosystem II3.32E-04
17GO:0005786: signal recognition particle, endoplasmic reticulum targeting3.53E-04
18GO:0043231: intracellular membrane-bounded organelle4.48E-04
19GO:0080085: signal recognition particle, chloroplast targeting6.34E-04
20GO:0030981: cortical microtubule cytoskeleton6.34E-04
21GO:0010287: plastoglobule7.64E-04
22GO:0016020: membrane7.81E-04
23GO:0000312: plastid small ribosomal subunit9.86E-04
24GO:0005782: peroxisomal matrix1.03E-03
25GO:0030076: light-harvesting complex1.10E-03
26GO:0042651: thylakoid membrane1.49E-03
27GO:0009654: photosystem II oxygen evolving complex1.49E-03
28GO:0009526: plastid envelope1.97E-03
29GO:0055035: plastid thylakoid membrane2.52E-03
30GO:0009512: cytochrome b6f complex2.52E-03
31GO:0019898: extrinsic component of membrane3.08E-03
32GO:0030529: intracellular ribonucleoprotein complex4.76E-03
33GO:0009501: amyloplast5.12E-03
34GO:0009536: plastid6.97E-03
35GO:0046658: anchored component of plasma membrane9.91E-03
36GO:0000311: plastid large ribosomal subunit1.01E-02
37GO:0030095: chloroplast photosystem II1.21E-02
38GO:0043234: protein complex1.41E-02
39GO:0005840: ribosome1.60E-02
40GO:0015935: small ribosomal subunit1.75E-02
41GO:0009532: plastid stroma1.75E-02
42GO:0005623: cell2.53E-02
43GO:0009522: photosystem I2.61E-02
44GO:0005759: mitochondrial matrix3.09E-02
45GO:0010319: stromule3.45E-02
46GO:0022627: cytosolic small ribosomal subunit4.48E-02
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Gene type



Gene DE type