Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G08920

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0018023: peptidyl-lysine trimethylation0.00E+00
2GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
3GO:0090627: plant epidermal cell differentiation0.00E+00
4GO:1900000: regulation of anthocyanin catabolic process0.00E+00
5GO:0045014: negative regulation of transcription by glucose0.00E+00
6GO:1901918: negative regulation of exoribonuclease activity0.00E+00
7GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
8GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
9GO:0015979: photosynthesis1.46E-09
10GO:0015995: chlorophyll biosynthetic process1.69E-07
11GO:0009734: auxin-activated signaling pathway4.91E-06
12GO:0010207: photosystem II assembly9.11E-06
13GO:0009733: response to auxin1.13E-04
14GO:0000476: maturation of 4.5S rRNA1.25E-04
15GO:0000967: rRNA 5'-end processing1.25E-04
16GO:0010206: photosystem II repair1.25E-04
17GO:0010480: microsporocyte differentiation1.25E-04
18GO:0031338: regulation of vesicle fusion1.25E-04
19GO:0043007: maintenance of rDNA1.25E-04
20GO:0034337: RNA folding1.25E-04
21GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process1.25E-04
22GO:0010205: photoinhibition1.51E-04
23GO:0019684: photosynthesis, light reaction2.10E-04
24GO:0035304: regulation of protein dephosphorylation2.90E-04
25GO:0010541: acropetal auxin transport2.90E-04
26GO:0018026: peptidyl-lysine monomethylation2.90E-04
27GO:0015790: UDP-xylose transport2.90E-04
28GO:0034470: ncRNA processing2.90E-04
29GO:0009640: photomorphogenesis3.42E-04
30GO:0009926: auxin polar transport3.42E-04
31GO:0010160: formation of animal organ boundary4.78E-04
32GO:0090391: granum assembly4.78E-04
33GO:0045493: xylan catabolic process4.78E-04
34GO:0090630: activation of GTPase activity4.78E-04
35GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement4.78E-04
36GO:0048443: stamen development6.80E-04
37GO:0009647: skotomorphogenesis6.85E-04
38GO:0010306: rhamnogalacturonan II biosynthetic process6.85E-04
39GO:0051513: regulation of monopolar cell growth6.85E-04
40GO:0080170: hydrogen peroxide transmembrane transport6.85E-04
41GO:0043481: anthocyanin accumulation in tissues in response to UV light6.85E-04
42GO:0042631: cellular response to water deprivation7.93E-04
43GO:0009741: response to brassinosteroid8.52E-04
44GO:0030104: water homeostasis9.08E-04
45GO:0009755: hormone-mediated signaling pathway9.08E-04
46GO:0009765: photosynthesis, light harvesting9.08E-04
47GO:0010438: cellular response to sulfur starvation1.15E-03
48GO:0009228: thiamine biosynthetic process1.41E-03
49GO:0009913: epidermal cell differentiation1.41E-03
50GO:0006655: phosphatidylglycerol biosynthetic process1.41E-03
51GO:0060918: auxin transport1.41E-03
52GO:0010190: cytochrome b6f complex assembly1.41E-03
53GO:0042549: photosystem II stabilization1.41E-03
54GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.41E-03
55GO:0040008: regulation of growth1.45E-03
56GO:0007275: multicellular organism development1.66E-03
57GO:1901259: chloroplast rRNA processing1.68E-03
58GO:0031930: mitochondria-nucleus signaling pathway1.68E-03
59GO:0009942: longitudinal axis specification1.68E-03
60GO:0010411: xyloglucan metabolic process1.74E-03
61GO:0009769: photosynthesis, light harvesting in photosystem II1.98E-03
62GO:0050829: defense response to Gram-negative bacterium1.98E-03
63GO:1900057: positive regulation of leaf senescence1.98E-03
64GO:0009645: response to low light intensity stimulus1.98E-03
65GO:0048437: floral organ development1.98E-03
66GO:0010218: response to far red light2.12E-03
67GO:0009735: response to cytokinin2.24E-03
68GO:0046620: regulation of organ growth2.29E-03
69GO:0010439: regulation of glucosinolate biosynthetic process2.29E-03
70GO:0009690: cytokinin metabolic process2.29E-03
71GO:2000070: regulation of response to water deprivation2.29E-03
72GO:0005978: glycogen biosynthetic process2.29E-03
73GO:0009819: drought recovery2.29E-03
74GO:0009637: response to blue light2.43E-03
75GO:0007389: pattern specification process2.61E-03
76GO:0009657: plastid organization2.61E-03
77GO:0006783: heme biosynthetic process2.95E-03
78GO:0048589: developmental growth2.95E-03
79GO:0009245: lipid A biosynthetic process2.95E-03
80GO:0010114: response to red light3.12E-03
81GO:0009644: response to high light intensity3.37E-03
82GO:0006782: protoporphyrinogen IX biosynthetic process3.68E-03
83GO:0009664: plant-type cell wall organization3.91E-03
84GO:1903507: negative regulation of nucleic acid-templated transcription4.06E-03
85GO:0048229: gametophyte development4.06E-03
86GO:0009773: photosynthetic electron transport in photosystem I4.06E-03
87GO:0009682: induced systemic resistance4.06E-03
88GO:0010152: pollen maturation4.45E-03
89GO:0010105: negative regulation of ethylene-activated signaling pathway4.45E-03
90GO:0008361: regulation of cell size4.45E-03
91GO:0016024: CDP-diacylglycerol biosynthetic process4.45E-03
92GO:0010075: regulation of meristem growth4.86E-03
93GO:0010540: basipetal auxin transport5.28E-03
94GO:0009934: regulation of meristem structural organization5.28E-03
95GO:0010030: positive regulation of seed germination5.71E-03
96GO:0006289: nucleotide-excision repair6.61E-03
97GO:0007017: microtubule-based process7.08E-03
98GO:0009768: photosynthesis, light harvesting in photosystem I7.08E-03
99GO:0016114: terpenoid biosynthetic process7.56E-03
100GO:0016998: cell wall macromolecule catabolic process7.56E-03
101GO:0009269: response to desiccation7.56E-03
102GO:2000022: regulation of jasmonic acid mediated signaling pathway8.05E-03
103GO:0009625: response to insect8.56E-03
104GO:0009831: plant-type cell wall modification involved in multidimensional cell growth8.56E-03
105GO:0009789: positive regulation of abscisic acid-activated signaling pathway9.60E-03
106GO:0042335: cuticle development1.01E-02
107GO:0034220: ion transmembrane transport1.01E-02
108GO:0048653: anther development1.01E-02
109GO:0045490: pectin catabolic process1.03E-02
110GO:0009958: positive gravitropism1.07E-02
111GO:0048868: pollen tube development1.07E-02
112GO:0048825: cotyledon development1.18E-02
113GO:0019252: starch biosynthetic process1.18E-02
114GO:0009611: response to wounding1.23E-02
115GO:0010193: response to ozone1.24E-02
116GO:0000302: response to reactive oxygen species1.24E-02
117GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.24E-02
118GO:0010583: response to cyclopentenone1.30E-02
119GO:0009639: response to red or far red light1.42E-02
120GO:0009828: plant-type cell wall loosening1.42E-02
121GO:0010252: auxin homeostasis1.42E-02
122GO:0009826: unidimensional cell growth1.54E-02
123GO:0009627: systemic acquired resistance1.74E-02
124GO:0016311: dephosphorylation1.87E-02
125GO:0018298: protein-chromophore linkage1.94E-02
126GO:0000160: phosphorelay signal transduction system2.01E-02
127GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.05E-02
128GO:0048527: lateral root development2.15E-02
129GO:0007568: aging2.15E-02
130GO:0009867: jasmonic acid mediated signaling pathway2.30E-02
131GO:0034599: cellular response to oxidative stress2.37E-02
132GO:0042546: cell wall biogenesis2.83E-02
133GO:0042742: defense response to bacterium2.90E-02
134GO:0008643: carbohydrate transport2.91E-02
135GO:0048364: root development3.06E-02
136GO:0031347: regulation of defense response3.15E-02
137GO:0009736: cytokinin-activated signaling pathway3.40E-02
138GO:0010224: response to UV-B3.49E-02
139GO:0006417: regulation of translation3.66E-02
140GO:0048316: seed development3.92E-02
141GO:0009740: gibberellic acid mediated signaling pathway4.19E-02
142GO:0042545: cell wall modification4.28E-02
143GO:0009624: response to nematode4.37E-02
144GO:0006396: RNA processing4.47E-02
145GO:0009742: brassinosteroid mediated signaling pathway4.56E-02
RankGO TermAdjusted P value
1GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
2GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity1.25E-04
5GO:0004853: uroporphyrinogen decarboxylase activity1.25E-04
6GO:0080062: cytokinin 9-beta-glucosyltransferase activity1.25E-04
7GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity1.25E-04
8GO:0047807: cytokinin 7-beta-glucosyltransferase activity1.25E-04
9GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity1.25E-04
10GO:0010242: oxygen evolving activity1.25E-04
11GO:0010329: auxin efflux transmembrane transporter activity2.77E-04
12GO:0016630: protochlorophyllide reductase activity2.90E-04
13GO:0016868: intramolecular transferase activity, phosphotransferases2.90E-04
14GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity2.90E-04
15GO:0005464: UDP-xylose transmembrane transporter activity2.90E-04
16GO:0008266: poly(U) RNA binding3.14E-04
17GO:0005528: FK506 binding4.36E-04
18GO:0070628: proteasome binding9.08E-04
19GO:0009011: starch synthase activity9.08E-04
20GO:0009044: xylan 1,4-beta-xylosidase activity9.08E-04
21GO:0008878: glucose-1-phosphate adenylyltransferase activity9.08E-04
22GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity9.08E-04
23GO:0046556: alpha-L-arabinofuranosidase activity9.08E-04
24GO:0016279: protein-lysine N-methyltransferase activity9.08E-04
25GO:0010011: auxin binding9.08E-04
26GO:0017137: Rab GTPase binding1.15E-03
27GO:0016846: carbon-sulfur lyase activity1.15E-03
28GO:0031593: polyubiquitin binding1.41E-03
29GO:0031177: phosphopantetheine binding1.41E-03
30GO:0004130: cytochrome-c peroxidase activity1.41E-03
31GO:0016168: chlorophyll binding1.57E-03
32GO:0000035: acyl binding1.68E-03
33GO:0005096: GTPase activator activity2.02E-03
34GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process2.29E-03
35GO:0009672: auxin:proton symporter activity3.31E-03
36GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.64E-03
37GO:0047372: acylglycerol lipase activity4.06E-03
38GO:0031072: heat shock protein binding4.86E-03
39GO:0005515: protein binding5.09E-03
40GO:0031409: pigment binding6.15E-03
41GO:0003714: transcription corepressor activity6.61E-03
42GO:0043130: ubiquitin binding6.61E-03
43GO:0033612: receptor serine/threonine kinase binding7.56E-03
44GO:0030570: pectate lyase activity8.56E-03
45GO:0003756: protein disulfide isomerase activity9.07E-03
46GO:0003727: single-stranded RNA binding9.07E-03
47GO:0016762: xyloglucan:xyloglucosyl transferase activity1.24E-02
48GO:0000156: phosphorelay response regulator activity1.36E-02
49GO:0003684: damaged DNA binding1.42E-02
50GO:0005200: structural constituent of cytoskeleton1.48E-02
51GO:0015250: water channel activity1.61E-02
52GO:0016798: hydrolase activity, acting on glycosyl bonds1.81E-02
53GO:0030145: manganese ion binding2.15E-02
54GO:0003993: acid phosphatase activity2.37E-02
55GO:0004712: protein serine/threonine/tyrosine kinase activity2.45E-02
56GO:0043621: protein self-association2.91E-02
57GO:0045330: aspartyl esterase activity3.66E-02
58GO:0003777: microtubule motor activity3.66E-02
59GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.92E-02
60GO:0008289: lipid binding4.07E-02
61GO:0080043: quercetin 3-O-glucosyltransferase activity4.10E-02
62GO:0080044: quercetin 7-O-glucosyltransferase activity4.10E-02
63GO:0030599: pectinesterase activity4.19E-02
64GO:0051082: unfolded protein binding4.37E-02
65GO:0016746: transferase activity, transferring acyl groups4.47E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0009534: chloroplast thylakoid1.85E-24
4GO:0009507: chloroplast3.78E-21
5GO:0009535: chloroplast thylakoid membrane5.46E-20
6GO:0009543: chloroplast thylakoid lumen1.97E-13
7GO:0009579: thylakoid1.14E-12
8GO:0009570: chloroplast stroma4.03E-09
9GO:0009538: photosystem I reaction center4.94E-09
10GO:0031977: thylakoid lumen1.72E-08
11GO:0030095: chloroplast photosystem II1.16E-07
12GO:0009941: chloroplast envelope2.87E-07
13GO:0010287: plastoglobule7.37E-06
14GO:0009522: photosystem I5.59E-05
15GO:0043674: columella1.25E-04
16GO:0030093: chloroplast photosystem I2.90E-04
17GO:0009654: photosystem II oxygen evolving complex4.81E-04
18GO:0031969: chloroplast membrane6.02E-04
19GO:0009531: secondary cell wall6.85E-04
20GO:0042646: plastid nucleoid6.85E-04
21GO:0009517: PSII associated light-harvesting complex II9.08E-04
22GO:0009523: photosystem II9.76E-04
23GO:0019898: extrinsic component of membrane9.76E-04
24GO:0055035: plastid thylakoid membrane1.15E-03
25GO:0016363: nuclear matrix1.68E-03
26GO:0042807: central vacuole1.98E-03
27GO:0009533: chloroplast stromal thylakoid1.98E-03
28GO:0045298: tubulin complex2.95E-03
29GO:0008180: COP9 signalosome2.95E-03
30GO:0032040: small-subunit processome4.45E-03
31GO:0009508: plastid chromosome4.86E-03
32GO:0030076: light-harvesting complex5.71E-03
33GO:0071944: cell periphery1.36E-02
34GO:0009295: nucleoid1.48E-02
35GO:0016020: membrane1.54E-02
36GO:0019005: SCF ubiquitin ligase complex1.94E-02
37GO:0005618: cell wall2.01E-02
38GO:0000502: proteasome complex3.40E-02
39GO:0012505: endomembrane system4.28E-02
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Gene type



Gene DE type