GO Enrichment Analysis of Co-expressed Genes with
AT3G08740
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 2 | GO:0015742: alpha-ketoglutarate transport | 0.00E+00 |
| 3 | GO:0006223: uracil salvage | 0.00E+00 |
| 4 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 5 | GO:0006412: translation | 3.21E-12 |
| 6 | GO:0009735: response to cytokinin | 1.56E-09 |
| 7 | GO:0042254: ribosome biogenesis | 1.57E-08 |
| 8 | GO:0006633: fatty acid biosynthetic process | 8.03E-08 |
| 9 | GO:0042742: defense response to bacterium | 9.67E-06 |
| 10 | GO:0000413: protein peptidyl-prolyl isomerization | 1.41E-05 |
| 11 | GO:0032544: plastid translation | 4.53E-05 |
| 12 | GO:0042371: vitamin K biosynthetic process | 7.39E-05 |
| 13 | GO:0071258: cellular response to gravity | 1.77E-04 |
| 14 | GO:0006729: tetrahydrobiopterin biosynthetic process | 1.77E-04 |
| 15 | GO:0006568: tryptophan metabolic process | 1.77E-04 |
| 16 | GO:0009411: response to UV | 3.14E-04 |
| 17 | GO:0006241: CTP biosynthetic process | 4.32E-04 |
| 18 | GO:0006165: nucleoside diphosphate phosphorylation | 4.32E-04 |
| 19 | GO:0006228: UTP biosynthetic process | 4.32E-04 |
| 20 | GO:0006986: response to unfolded protein | 4.32E-04 |
| 21 | GO:0055070: copper ion homeostasis | 4.32E-04 |
| 22 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 4.32E-04 |
| 23 | GO:0009102: biotin biosynthetic process | 4.32E-04 |
| 24 | GO:0051085: chaperone mediated protein folding requiring cofactor | 4.32E-04 |
| 25 | GO:0015729: oxaloacetate transport | 4.32E-04 |
| 26 | GO:0006183: GTP biosynthetic process | 5.75E-04 |
| 27 | GO:0044206: UMP salvage | 5.75E-04 |
| 28 | GO:2000122: negative regulation of stomatal complex development | 5.75E-04 |
| 29 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 5.75E-04 |
| 30 | GO:0010037: response to carbon dioxide | 5.75E-04 |
| 31 | GO:0019676: ammonia assimilation cycle | 5.75E-04 |
| 32 | GO:0015976: carbon utilization | 5.75E-04 |
| 33 | GO:0015743: malate transport | 5.75E-04 |
| 34 | GO:0048359: mucilage metabolic process involved in seed coat development | 7.29E-04 |
| 35 | GO:0071423: malate transmembrane transport | 7.29E-04 |
| 36 | GO:0043097: pyrimidine nucleoside salvage | 7.29E-04 |
| 37 | GO:0010236: plastoquinone biosynthetic process | 7.29E-04 |
| 38 | GO:0015995: chlorophyll biosynthetic process | 8.83E-04 |
| 39 | GO:0006206: pyrimidine nucleobase metabolic process | 8.91E-04 |
| 40 | GO:0006796: phosphate-containing compound metabolic process | 8.91E-04 |
| 41 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 8.91E-04 |
| 42 | GO:0042549: photosystem II stabilization | 8.91E-04 |
| 43 | GO:0009817: defense response to fungus, incompatible interaction | 9.73E-04 |
| 44 | GO:0042372: phylloquinone biosynthetic process | 1.06E-03 |
| 45 | GO:0017148: negative regulation of translation | 1.06E-03 |
| 46 | GO:0010555: response to mannitol | 1.06E-03 |
| 47 | GO:0009772: photosynthetic electron transport in photosystem II | 1.24E-03 |
| 48 | GO:0006457: protein folding | 1.28E-03 |
| 49 | GO:0008610: lipid biosynthetic process | 1.43E-03 |
| 50 | GO:0009642: response to light intensity | 1.43E-03 |
| 51 | GO:0048564: photosystem I assembly | 1.43E-03 |
| 52 | GO:0009657: plastid organization | 1.63E-03 |
| 53 | GO:0006526: arginine biosynthetic process | 1.63E-03 |
| 54 | GO:0015979: photosynthesis | 1.69E-03 |
| 55 | GO:0045454: cell redox homeostasis | 1.79E-03 |
| 56 | GO:0015780: nucleotide-sugar transport | 1.83E-03 |
| 57 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.05E-03 |
| 58 | GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway | 2.05E-03 |
| 59 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.28E-03 |
| 60 | GO:0045036: protein targeting to chloroplast | 2.28E-03 |
| 61 | GO:0006949: syncytium formation | 2.28E-03 |
| 62 | GO:0006096: glycolytic process | 2.46E-03 |
| 63 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.51E-03 |
| 64 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.51E-03 |
| 65 | GO:0010207: photosystem II assembly | 3.25E-03 |
| 66 | GO:0046688: response to copper ion | 3.51E-03 |
| 67 | GO:0009409: response to cold | 4.00E-03 |
| 68 | GO:0019344: cysteine biosynthetic process | 4.06E-03 |
| 69 | GO:0009116: nucleoside metabolic process | 4.06E-03 |
| 70 | GO:0007017: microtubule-based process | 4.34E-03 |
| 71 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 5.23E-03 |
| 72 | GO:0000226: microtubule cytoskeleton organization | 6.18E-03 |
| 73 | GO:0006520: cellular amino acid metabolic process | 6.51E-03 |
| 74 | GO:0006814: sodium ion transport | 6.84E-03 |
| 75 | GO:0032502: developmental process | 7.89E-03 |
| 76 | GO:0009828: plant-type cell wall loosening | 8.61E-03 |
| 77 | GO:0010027: thylakoid membrane organization | 9.74E-03 |
| 78 | GO:0016126: sterol biosynthetic process | 9.74E-03 |
| 79 | GO:0006499: N-terminal protein myristoylation | 1.26E-02 |
| 80 | GO:0010119: regulation of stomatal movement | 1.30E-02 |
| 81 | GO:0030001: metal ion transport | 1.52E-02 |
| 82 | GO:0006631: fatty acid metabolic process | 1.57E-02 |
| 83 | GO:0042542: response to hydrogen peroxide | 1.61E-02 |
| 84 | GO:0008643: carbohydrate transport | 1.76E-02 |
| 85 | GO:0009664: plant-type cell wall organization | 1.95E-02 |
| 86 | GO:0009585: red, far-red light phototransduction | 2.05E-02 |
| 87 | GO:0009740: gibberellic acid mediated signaling pathway | 2.53E-02 |
| 88 | GO:0009624: response to nematode | 2.64E-02 |
| 89 | GO:0009793: embryo development ending in seed dormancy | 3.39E-02 |
| 90 | GO:0009790: embryo development | 3.46E-02 |
| 91 | GO:0016036: cellular response to phosphate starvation | 3.70E-02 |
| 92 | GO:0009451: RNA modification | 3.96E-02 |
| 93 | GO:0009739: response to gibberellin | 4.22E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 2 | GO:0016631: enoyl-[acyl-carrier-protein] reductase activity | 0.00E+00 |
| 3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 4 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 5 | GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity | 0.00E+00 |
| 6 | GO:0015139: alpha-ketoglutarate transmembrane transporter activity | 0.00E+00 |
| 7 | GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity | 0.00E+00 |
| 8 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 9 | GO:0003735: structural constituent of ribosome | 5.38E-14 |
| 10 | GO:0019843: rRNA binding | 3.15E-13 |
| 11 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 3.06E-07 |
| 12 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 2.80E-06 |
| 13 | GO:0051920: peroxiredoxin activity | 1.97E-05 |
| 14 | GO:0016209: antioxidant activity | 3.55E-05 |
| 15 | GO:0005507: copper ion binding | 3.56E-05 |
| 16 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 7.39E-05 |
| 17 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 7.39E-05 |
| 18 | GO:0004163: diphosphomevalonate decarboxylase activity | 7.39E-05 |
| 19 | GO:0010285: L,L-diaminopimelate aminotransferase activity | 7.39E-05 |
| 20 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 7.39E-05 |
| 21 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 7.39E-05 |
| 22 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 7.39E-05 |
| 23 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.61E-04 |
| 24 | GO:0015367: oxoglutarate:malate antiporter activity | 1.77E-04 |
| 25 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 2.99E-04 |
| 26 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 2.99E-04 |
| 27 | GO:0016851: magnesium chelatase activity | 4.32E-04 |
| 28 | GO:0015131: oxaloacetate transmembrane transporter activity | 4.32E-04 |
| 29 | GO:0004550: nucleoside diphosphate kinase activity | 4.32E-04 |
| 30 | GO:0008097: 5S rRNA binding | 4.32E-04 |
| 31 | GO:0004659: prenyltransferase activity | 5.75E-04 |
| 32 | GO:0004845: uracil phosphoribosyltransferase activity | 5.75E-04 |
| 33 | GO:0016836: hydro-lyase activity | 5.75E-04 |
| 34 | GO:0008483: transaminase activity | 6.76E-04 |
| 35 | GO:0016462: pyrophosphatase activity | 8.91E-04 |
| 36 | GO:0102391: decanoate--CoA ligase activity | 1.06E-03 |
| 37 | GO:0004849: uridine kinase activity | 1.06E-03 |
| 38 | GO:0004427: inorganic diphosphatase activity | 1.24E-03 |
| 39 | GO:0015140: malate transmembrane transporter activity | 1.24E-03 |
| 40 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.24E-03 |
| 41 | GO:0004089: carbonate dehydratase activity | 3.00E-03 |
| 42 | GO:0008266: poly(U) RNA binding | 3.25E-03 |
| 43 | GO:0030170: pyridoxal phosphate binding | 4.08E-03 |
| 44 | GO:0051087: chaperone binding | 4.34E-03 |
| 45 | GO:0008514: organic anion transmembrane transporter activity | 5.54E-03 |
| 46 | GO:0003723: RNA binding | 6.03E-03 |
| 47 | GO:0042802: identical protein binding | 6.43E-03 |
| 48 | GO:0008080: N-acetyltransferase activity | 6.51E-03 |
| 49 | GO:0004601: peroxidase activity | 7.82E-03 |
| 50 | GO:0005200: structural constituent of cytoskeleton | 8.98E-03 |
| 51 | GO:0005525: GTP binding | 9.06E-03 |
| 52 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.17E-02 |
| 53 | GO:0042803: protein homodimerization activity | 1.22E-02 |
| 54 | GO:0003924: GTPase activity | 1.44E-02 |
| 55 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.52E-02 |
| 56 | GO:0016491: oxidoreductase activity | 1.67E-02 |
| 57 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.76E-02 |
| 58 | GO:0051287: NAD binding | 1.90E-02 |
| 59 | GO:0016887: ATPase activity | 2.23E-02 |
| 60 | GO:0051082: unfolded protein binding | 2.64E-02 |
| 61 | GO:0005509: calcium ion binding | 4.74E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005835: fatty acid synthase complex | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009570: chloroplast stroma | 1.69E-53 |
| 4 | GO:0009507: chloroplast | 4.08E-39 |
| 5 | GO:0009941: chloroplast envelope | 3.00E-35 |
| 6 | GO:0009579: thylakoid | 5.54E-28 |
| 7 | GO:0031977: thylakoid lumen | 2.99E-13 |
| 8 | GO:0009534: chloroplast thylakoid | 3.36E-13 |
| 9 | GO:0005840: ribosome | 3.87E-13 |
| 10 | GO:0009535: chloroplast thylakoid membrane | 2.42E-12 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 9.12E-10 |
| 12 | GO:0000311: plastid large ribosomal subunit | 1.69E-06 |
| 13 | GO:0010319: stromule | 3.43E-05 |
| 14 | GO:0016020: membrane | 7.21E-05 |
| 15 | GO:0009547: plastid ribosome | 7.39E-05 |
| 16 | GO:0022626: cytosolic ribosome | 1.24E-04 |
| 17 | GO:0030095: chloroplast photosystem II | 1.50E-04 |
| 18 | GO:0009654: photosystem II oxygen evolving complex | 2.37E-04 |
| 19 | GO:0015935: small ribosomal subunit | 2.61E-04 |
| 20 | GO:0010007: magnesium chelatase complex | 2.99E-04 |
| 21 | GO:0019898: extrinsic component of membrane | 4.95E-04 |
| 22 | GO:0055035: plastid thylakoid membrane | 7.29E-04 |
| 23 | GO:0000793: condensed chromosome | 8.91E-04 |
| 24 | GO:0000794: condensed nuclear chromosome | 1.24E-03 |
| 25 | GO:0045298: tubulin complex | 1.83E-03 |
| 26 | GO:0000312: plastid small ribosomal subunit | 3.25E-03 |
| 27 | GO:0009536: plastid | 3.44E-03 |
| 28 | GO:0048046: apoplast | 4.99E-03 |
| 29 | GO:0022625: cytosolic large ribosomal subunit | 1.02E-02 |
| 30 | GO:0009707: chloroplast outer membrane | 1.17E-02 |
| 31 | GO:0005618: cell wall | 2.02E-02 |
| 32 | GO:0009706: chloroplast inner membrane | 2.64E-02 |
| 33 | GO:0005777: peroxisome | 2.93E-02 |
| 34 | GO:0005623: cell | 3.16E-02 |
| 35 | GO:0005759: mitochondrial matrix | 3.64E-02 |
| 36 | GO:0022627: cytosolic small ribosomal subunit | 4.75E-02 |