Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G06150

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0006223: uracil salvage0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0016553: base conversion or substitution editing0.00E+00
5GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
6GO:0006399: tRNA metabolic process0.00E+00
7GO:0015979: photosynthesis5.57E-07
8GO:0042335: cuticle development5.11E-06
9GO:0009773: photosynthetic electron transport in photosystem I1.52E-05
10GO:0009658: chloroplast organization2.77E-05
11GO:0006546: glycine catabolic process3.17E-05
12GO:0010190: cytochrome b6f complex assembly7.50E-05
13GO:0006633: fatty acid biosynthetic process7.58E-05
14GO:0009416: response to light stimulus8.63E-05
15GO:0010196: nonphotochemical quenching1.37E-04
16GO:0043489: RNA stabilization2.09E-04
17GO:1904966: positive regulation of vitamin E biosynthetic process2.09E-04
18GO:1904964: positive regulation of phytol biosynthetic process2.09E-04
19GO:0034757: negative regulation of iron ion transport2.09E-04
20GO:0015969: guanosine tetraphosphate metabolic process2.09E-04
21GO:0032544: plastid translation2.19E-04
22GO:0071482: cellular response to light stimulus2.19E-04
23GO:0055114: oxidation-reduction process2.75E-04
24GO:0006810: transport3.29E-04
25GO:0006352: DNA-templated transcription, initiation4.29E-04
26GO:0000038: very long-chain fatty acid metabolic process4.29E-04
27GO:0018298: protein-chromophore linkage4.53E-04
28GO:1902326: positive regulation of chlorophyll biosynthetic process4.66E-04
29GO:0010271: regulation of chlorophyll catabolic process4.66E-04
30GO:0030388: fructose 1,6-bisphosphate metabolic process4.66E-04
31GO:0006006: glucose metabolic process5.58E-04
32GO:0006094: gluconeogenesis5.58E-04
33GO:0009767: photosynthetic electron transport chain5.58E-04
34GO:0016051: carbohydrate biosynthetic process6.12E-04
35GO:0010020: chloroplast fission6.29E-04
36GO:0019253: reductive pentose-phosphate cycle6.29E-04
37GO:0010143: cutin biosynthetic process6.29E-04
38GO:0080117: secondary growth7.59E-04
39GO:0006000: fructose metabolic process7.59E-04
40GO:0010581: regulation of starch biosynthetic process7.59E-04
41GO:0006518: peptide metabolic process7.59E-04
42GO:0006696: ergosterol biosynthetic process7.59E-04
43GO:0030865: cortical cytoskeleton organization7.59E-04
44GO:2001295: malonyl-CoA biosynthetic process7.59E-04
45GO:0000913: preprophase band assembly7.59E-04
46GO:0006833: water transport7.82E-04
47GO:0009768: photosynthesis, light harvesting in photosystem I9.49E-04
48GO:0009636: response to toxic substance9.72E-04
49GO:0009800: cinnamic acid biosynthetic process1.08E-03
50GO:0010731: protein glutathionylation1.08E-03
51GO:2001141: regulation of RNA biosynthetic process1.08E-03
52GO:0044206: UMP salvage1.44E-03
53GO:0071483: cellular response to blue light1.44E-03
54GO:0010037: response to carbon dioxide1.44E-03
55GO:0015976: carbon utilization1.44E-03
56GO:0019464: glycine decarboxylation via glycine cleavage system1.44E-03
57GO:0045727: positive regulation of translation1.44E-03
58GO:2000122: negative regulation of stomatal complex development1.44E-03
59GO:0006096: glycolytic process1.50E-03
60GO:0000226: microtubule cytoskeleton organization1.56E-03
61GO:0034220: ion transmembrane transport1.56E-03
62GO:0043097: pyrimidine nucleoside salvage1.83E-03
63GO:0006564: L-serine biosynthetic process1.83E-03
64GO:0006461: protein complex assembly1.83E-03
65GO:0019252: starch biosynthetic process1.94E-03
66GO:0048831: regulation of shoot system development2.26E-03
67GO:0006559: L-phenylalanine catabolic process2.26E-03
68GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.26E-03
69GO:0006206: pyrimidine nucleobase metabolic process2.26E-03
70GO:0006014: D-ribose metabolic process2.26E-03
71GO:0042549: photosystem II stabilization2.26E-03
72GO:0048509: regulation of meristem development2.71E-03
73GO:0009854: oxidative photosynthetic carbon pathway2.71E-03
74GO:0016126: sterol biosynthetic process2.98E-03
75GO:0009645: response to low light intensity stimulus3.20E-03
76GO:0006400: tRNA modification3.20E-03
77GO:0006401: RNA catabolic process3.20E-03
78GO:0030497: fatty acid elongation3.20E-03
79GO:0009409: response to cold3.31E-03
80GO:0009231: riboflavin biosynthetic process3.71E-03
81GO:0007155: cell adhesion3.71E-03
82GO:0030244: cellulose biosynthetic process3.88E-03
83GO:0009657: plastid organization4.24E-03
84GO:0006002: fructose 6-phosphate metabolic process4.24E-03
85GO:0019430: removal of superoxide radicals4.24E-03
86GO:0010119: regulation of stomatal movement4.48E-03
87GO:0010206: photosystem II repair4.80E-03
88GO:0000902: cell morphogenesis4.80E-03
89GO:0009051: pentose-phosphate shunt, oxidative branch4.80E-03
90GO:0006098: pentose-phosphate shunt4.80E-03
91GO:0009637: response to blue light4.91E-03
92GO:0010380: regulation of chlorophyll biosynthetic process5.38E-03
93GO:0006631: fatty acid metabolic process5.84E-03
94GO:0009870: defense response signaling pathway, resistance gene-dependent5.99E-03
95GO:0006535: cysteine biosynthetic process from serine5.99E-03
96GO:0043069: negative regulation of programmed cell death5.99E-03
97GO:0048829: root cap development5.99E-03
98GO:0009826: unidimensional cell growth6.30E-03
99GO:0010114: response to red light6.33E-03
100GO:0009744: response to sucrose6.33E-03
101GO:0019684: photosynthesis, light reaction6.62E-03
102GO:0009089: lysine biosynthetic process via diaminopimelate6.62E-03
103GO:0043085: positive regulation of catalytic activity6.62E-03
104GO:0006415: translational termination6.62E-03
105GO:1903507: negative regulation of nucleic acid-templated transcription6.62E-03
106GO:0000272: polysaccharide catabolic process6.62E-03
107GO:0018119: peptidyl-cysteine S-nitrosylation6.62E-03
108GO:0006855: drug transmembrane transport7.39E-03
109GO:0009725: response to hormone7.96E-03
110GO:0005986: sucrose biosynthetic process7.96E-03
111GO:0006364: rRNA processing8.54E-03
112GO:0010207: photosystem II assembly8.66E-03
113GO:0090351: seedling development9.37E-03
114GO:0010025: wax biosynthetic process1.01E-02
115GO:0019344: cysteine biosynthetic process1.09E-02
116GO:0009116: nucleoside metabolic process1.09E-02
117GO:0045454: cell redox homeostasis1.09E-02
118GO:0043622: cortical microtubule organization1.17E-02
119GO:0006869: lipid transport1.23E-02
120GO:0003333: amino acid transmembrane transport1.25E-02
121GO:0061077: chaperone-mediated protein folding1.25E-02
122GO:2000022: regulation of jasmonic acid mediated signaling pathway1.33E-02
123GO:0030245: cellulose catabolic process1.33E-02
124GO:0071215: cellular response to abscisic acid stimulus1.41E-02
125GO:0016117: carotenoid biosynthetic process1.59E-02
126GO:0070417: cellular response to cold1.59E-02
127GO:0010087: phloem or xylem histogenesis1.68E-02
128GO:0042631: cellular response to water deprivation1.68E-02
129GO:0045489: pectin biosynthetic process1.77E-02
130GO:0048868: pollen tube development1.77E-02
131GO:0008654: phospholipid biosynthetic process1.96E-02
132GO:0071554: cell wall organization or biogenesis2.06E-02
133GO:0016132: brassinosteroid biosynthetic process2.06E-02
134GO:0010583: response to cyclopentenone2.15E-02
135GO:0032502: developmental process2.15E-02
136GO:0007264: small GTPase mediated signal transduction2.15E-02
137GO:1901657: glycosyl compound metabolic process2.25E-02
138GO:0009735: response to cytokinin2.63E-02
139GO:0001666: response to hypoxia2.67E-02
140GO:0010027: thylakoid membrane organization2.67E-02
141GO:0010029: regulation of seed germination2.78E-02
142GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.78E-02
143GO:0042128: nitrate assimilation2.89E-02
144GO:0010411: xyloglucan metabolic process3.00E-02
145GO:0009611: response to wounding3.02E-02
146GO:0000160: phosphorelay signal transduction system3.34E-02
147GO:0009407: toxin catabolic process3.46E-02
148GO:0010218: response to far red light3.46E-02
149GO:0009631: cold acclimation3.58E-02
150GO:0006865: amino acid transport3.70E-02
151GO:0045087: innate immune response3.82E-02
152GO:0009853: photorespiration3.82E-02
153GO:0009867: jasmonic acid mediated signaling pathway3.82E-02
154GO:0055085: transmembrane transport3.94E-02
155GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.18E-02
156GO:0046686: response to cadmium ion4.21E-02
157GO:0046777: protein autophosphorylation4.32E-02
158GO:0009644: response to high light intensity4.84E-02
159GO:0006952: defense response4.87E-02
RankGO TermAdjusted P value
1GO:0008887: glycerate kinase activity0.00E+00
2GO:0050613: delta14-sterol reductase activity0.00E+00
3GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
4GO:0046905: phytoene synthase activity0.00E+00
5GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
6GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
7GO:0008859: exoribonuclease II activity0.00E+00
8GO:0001053: plastid sigma factor activity3.17E-05
9GO:0016987: sigma factor activity3.17E-05
10GO:0080132: fatty acid alpha-hydroxylase activity2.09E-04
11GO:0009496: plastoquinol--plastocyanin reductase activity2.09E-04
12GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.09E-04
13GO:0051996: squalene synthase activity2.09E-04
14GO:0000248: C-5 sterol desaturase activity2.09E-04
15GO:0016168: chlorophyll binding3.44E-04
16GO:0019843: rRNA binding4.02E-04
17GO:0004802: transketolase activity4.66E-04
18GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase4.66E-04
19GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.66E-04
20GO:0009884: cytokinin receptor activity4.66E-04
21GO:0008967: phosphoglycolate phosphatase activity4.66E-04
22GO:0008728: GTP diphosphokinase activity4.66E-04
23GO:0004310: farnesyl-diphosphate farnesyltransferase activity4.66E-04
24GO:0050017: L-3-cyanoalanine synthase activity4.66E-04
25GO:0010297: heteropolysaccharide binding4.66E-04
26GO:0004617: phosphoglycerate dehydrogenase activity4.66E-04
27GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity4.66E-04
28GO:0004047: aminomethyltransferase activity4.66E-04
29GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.66E-04
30GO:0008266: poly(U) RNA binding6.29E-04
31GO:0050734: hydroxycinnamoyltransferase activity7.59E-04
32GO:0045548: phenylalanine ammonia-lyase activity7.59E-04
33GO:0004148: dihydrolipoyl dehydrogenase activity7.59E-04
34GO:0003935: GTP cyclohydrolase II activity7.59E-04
35GO:0004075: biotin carboxylase activity7.59E-04
36GO:0030267: glyoxylate reductase (NADP) activity7.59E-04
37GO:0005034: osmosensor activity7.59E-04
38GO:0070330: aromatase activity7.59E-04
39GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity7.59E-04
40GO:0102337: 3-oxo-cerotoyl-CoA synthase activity7.82E-04
41GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity7.82E-04
42GO:0031409: pigment binding7.82E-04
43GO:0102336: 3-oxo-arachidoyl-CoA synthase activity7.82E-04
44GO:0005528: FK506 binding8.63E-04
45GO:0051537: 2 iron, 2 sulfur cluster binding9.27E-04
46GO:0042802: identical protein binding9.47E-04
47GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.02E-03
48GO:0016149: translation release factor activity, codon specific1.08E-03
49GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.08E-03
50GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.08E-03
51GO:0004375: glycine dehydrogenase (decarboxylating) activity1.08E-03
52GO:0005525: GTP binding1.21E-03
53GO:0043495: protein anchor1.44E-03
54GO:0004659: prenyltransferase activity1.44E-03
55GO:0004845: uracil phosphoribosyltransferase activity1.44E-03
56GO:0004345: glucose-6-phosphate dehydrogenase activity1.44E-03
57GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.44E-03
58GO:0010328: auxin influx transmembrane transporter activity1.44E-03
59GO:0005509: calcium ion binding1.55E-03
60GO:0050662: coenzyme binding1.81E-03
61GO:0016773: phosphotransferase activity, alcohol group as acceptor1.83E-03
62GO:0018685: alkane 1-monooxygenase activity1.83E-03
63GO:0003989: acetyl-CoA carboxylase activity1.83E-03
64GO:0009922: fatty acid elongase activity1.83E-03
65GO:0042578: phosphoric ester hydrolase activity2.26E-03
66GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.26E-03
67GO:0004332: fructose-bisphosphate aldolase activity2.26E-03
68GO:0004849: uridine kinase activity2.71E-03
69GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.71E-03
70GO:0004747: ribokinase activity2.71E-03
71GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.71E-03
72GO:0019900: kinase binding2.71E-03
73GO:0004124: cysteine synthase activity2.71E-03
74GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.71E-03
75GO:0016413: O-acetyltransferase activity2.82E-03
76GO:0015250: water channel activity2.98E-03
77GO:0019899: enzyme binding3.20E-03
78GO:0004033: aldo-keto reductase (NADP) activity3.71E-03
79GO:0008865: fructokinase activity3.71E-03
80GO:0015238: drug transmembrane transporter activity4.08E-03
81GO:0003747: translation release factor activity4.80E-03
82GO:0050661: NADP binding5.60E-03
83GO:0004673: protein histidine kinase activity5.99E-03
84GO:0008047: enzyme activator activity5.99E-03
85GO:0004364: glutathione transferase activity6.08E-03
86GO:0015386: potassium:proton antiporter activity6.62E-03
87GO:0051287: NAD binding7.66E-03
88GO:0000175: 3'-5'-exoribonuclease activity7.96E-03
89GO:0004022: alcohol dehydrogenase (NAD) activity7.96E-03
90GO:0004089: carbonate dehydratase activity7.96E-03
91GO:0031072: heat shock protein binding7.96E-03
92GO:0000155: phosphorelay sensor kinase activity7.96E-03
93GO:0005515: protein binding7.98E-03
94GO:0003899: DNA-directed 5'-3' RNA polymerase activity8.54E-03
95GO:0016740: transferase activity1.03E-02
96GO:0016491: oxidoreductase activity1.05E-02
97GO:0003714: transcription corepressor activity1.09E-02
98GO:0004871: signal transducer activity1.16E-02
99GO:0015079: potassium ion transmembrane transporter activity1.17E-02
100GO:0043424: protein histidine kinase binding1.17E-02
101GO:0004540: ribonuclease activity1.25E-02
102GO:0016746: transferase activity, transferring acyl groups1.25E-02
103GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.33E-02
104GO:0008810: cellulase activity1.41E-02
105GO:0022891: substrate-specific transmembrane transporter activity1.41E-02
106GO:0003924: GTPase activity1.43E-02
107GO:0009055: electron carrier activity1.56E-02
108GO:0004791: thioredoxin-disulfide reductase activity1.86E-02
109GO:0004872: receptor activity1.96E-02
110GO:0015297: antiporter activity2.01E-02
111GO:0008289: lipid binding2.17E-02
112GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.25E-02
113GO:0016791: phosphatase activity2.36E-02
114GO:0008483: transaminase activity2.46E-02
115GO:0005215: transporter activity2.56E-02
116GO:0016597: amino acid binding2.57E-02
117GO:0009931: calcium-dependent protein serine/threonine kinase activity2.89E-02
118GO:0004683: calmodulin-dependent protein kinase activity3.00E-02
119GO:0102483: scopolin beta-glucosidase activity3.00E-02
120GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding3.11E-02
121GO:0008236: serine-type peptidase activity3.11E-02
122GO:0004222: metalloendopeptidase activity3.46E-02
123GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.58E-02
124GO:0050897: cobalt ion binding3.58E-02
125GO:0050660: flavin adenine dinucleotide binding3.78E-02
126GO:0000987: core promoter proximal region sequence-specific DNA binding3.94E-02
127GO:0008422: beta-glucosidase activity4.07E-02
128GO:0051539: 4 iron, 4 sulfur cluster binding4.19E-02
129GO:0005198: structural molecule activity4.97E-02
130GO:0015293: symporter activity4.97E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast2.41E-32
2GO:0009535: chloroplast thylakoid membrane1.32E-16
3GO:0009570: chloroplast stroma6.07E-15
4GO:0009941: chloroplast envelope1.92E-14
5GO:0009543: chloroplast thylakoid lumen7.55E-12
6GO:0009579: thylakoid2.09E-08
7GO:0031977: thylakoid lumen1.63E-07
8GO:0009534: chloroplast thylakoid2.62E-07
9GO:0030095: chloroplast photosystem II5.78E-07
10GO:0009654: photosystem II oxygen evolving complex1.59E-06
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.54E-06
12GO:0019898: extrinsic component of membrane8.25E-06
13GO:0042651: thylakoid membrane5.85E-05
14GO:0009523: photosystem II1.75E-04
15GO:0009344: nitrite reductase complex [NAD(P)H]2.09E-04
16GO:0009547: plastid ribosome2.09E-04
17GO:0009782: photosystem I antenna complex2.09E-04
18GO:0016020: membrane2.99E-04
19GO:0031969: chloroplast membrane3.42E-04
20GO:0010287: plastoglobule3.69E-04
21GO:0000427: plastid-encoded plastid RNA polymerase complex4.66E-04
22GO:0030981: cortical microtubule cytoskeleton4.66E-04
23GO:0030076: light-harvesting complex7.02E-04
24GO:0005960: glycine cleavage complex1.08E-03
25GO:0000178: exosome (RNase complex)1.83E-03
26GO:0009512: cytochrome b6f complex1.83E-03
27GO:0010319: stromule2.66E-03
28GO:0048046: apoplast2.94E-03
29GO:0009533: chloroplast stromal thylakoid3.20E-03
30GO:0046658: anchored component of plasma membrane5.42E-03
31GO:0016021: integral component of membrane7.04E-03
32GO:0000311: plastid large ribosomal subunit7.28E-03
33GO:0030176: integral component of endoplasmic reticulum membrane9.37E-03
34GO:0005769: early endosome1.01E-02
35GO:0009706: chloroplast inner membrane1.22E-02
36GO:0009532: plastid stroma1.25E-02
37GO:0005789: endoplasmic reticulum membrane1.35E-02
38GO:0009522: photosystem I1.86E-02
39GO:0009504: cell plate1.96E-02
40GO:0005840: ribosome2.36E-02
41GO:0030529: intracellular ribonucleoprotein complex2.67E-02
42GO:0000932: P-body2.67E-02
43GO:0022626: cytosolic ribosome2.78E-02
44GO:0009536: plastid2.98E-02
45GO:0005886: plasma membrane3.02E-02
46GO:0015934: large ribosomal subunit3.58E-02
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Gene type



Gene DE type