co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G05970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
2	GO:0071433: cell wall repair	0.00E+00
3	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
4	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	7.96E-07
5	GO:2000072: regulation of defense response to fungus, incompatible interaction	7.96E-07
6	GO:0015696: ammonium transport	7.04E-06
7	GO:0072488: ammonium transmembrane transport	1.33E-05
8	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.63E-05
9	GO:0006680: glucosylceramide catabolic process	1.25E-04
10	GO:0006805: xenobiotic metabolic process	1.25E-04
11	GO:0051258: protein polymerization	2.90E-04
12	GO:0010541: acropetal auxin transport	2.90E-04
13	GO:0002221: pattern recognition receptor signaling pathway	2.90E-04
14	GO:0080181: lateral root branching	2.90E-04
15	GO:0015695: organic cation transport	4.78E-04
16	GO:0007276: gamete generation	6.85E-04
17	GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery	6.85E-04
18	GO:0001676: long-chain fatty acid metabolic process	6.85E-04
19	GO:0048194: Golgi vesicle budding	6.85E-04
20	GO:0006662: glycerol ether metabolic process	8.52E-04
21	GO:0000460: maturation of 5.8S rRNA	9.08E-04
22	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	9.08E-04
23	GO:0010188: response to microbial phytotoxin	9.08E-04
24	GO:0080142: regulation of salicylic acid biosynthetic process	9.08E-04
25	GO:0060548: negative regulation of cell death	9.08E-04
26	GO:0006468: protein phosphorylation	1.08E-03
27	GO:0006564: L-serine biosynthetic process	1.15E-03
28	GO:0031365: N-terminal protein amino acid modification	1.15E-03
29	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.41E-03
30	GO:0009228: thiamine biosynthetic process	1.41E-03
31	GO:0010405: arabinogalactan protein metabolic process	1.41E-03
32	GO:0006751: glutathione catabolic process	1.41E-03
33	GO:0000470: maturation of LSU-rRNA	1.41E-03
34	GO:0006952: defense response	1.42E-03
35	GO:0006694: steroid biosynthetic process	1.68E-03
36	GO:0007166: cell surface receptor signaling pathway	1.82E-03
37	GO:0042742: defense response to bacterium	1.84E-03
38	GO:0006979: response to oxidative stress	1.86E-03
39	GO:0070370: cellular heat acclimation	1.98E-03
40	GO:0015937: coenzyme A biosynthetic process	1.98E-03
41	GO:0043090: amino acid import	1.98E-03
42	GO:1900056: negative regulation of leaf senescence	1.98E-03
43	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.29E-03
44	GO:0045087: innate immune response	2.43E-03
45	GO:0034599: cellular response to oxidative stress	2.54E-03
46	GO:0006002: fructose 6-phosphate metabolic process	2.61E-03
47	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.31E-03
48	GO:0009636: response to toxic substance	3.50E-03
49	GO:0000103: sulfate assimilation	3.68E-03
50	GO:0046686: response to cadmium ion	4.00E-03
51	GO:0072593: reactive oxygen species metabolic process	4.06E-03
52	GO:0006486: protein glycosylation	4.20E-03
53	GO:0045454: cell redox homeostasis	4.41E-03
54	GO:0015706: nitrate transport	4.45E-03
55	GO:0010105: negative regulation of ethylene-activated signaling pathway	4.45E-03
56	GO:0016925: protein sumoylation	4.45E-03
57	GO:0071365: cellular response to auxin stimulus	4.45E-03
58	GO:0010102: lateral root morphogenesis	4.86E-03
59	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	4.86E-03
60	GO:0034605: cellular response to heat	5.28E-03
61	GO:0010167: response to nitrate	5.71E-03
62	GO:0070588: calcium ion transmembrane transport	5.71E-03
63	GO:0010053: root epidermal cell differentiation	5.71E-03
64	GO:0009969: xyloglucan biosynthetic process	5.71E-03
65	GO:0009624: response to nematode	5.96E-03
66	GO:0034976: response to endoplasmic reticulum stress	6.15E-03
67	GO:0000027: ribosomal large subunit assembly	6.61E-03
68	GO:0030150: protein import into mitochondrial matrix	6.61E-03
69	GO:0010187: negative regulation of seed germination	6.61E-03
70	GO:0006406: mRNA export from nucleus	6.61E-03
71	GO:0051302: regulation of cell division	7.08E-03
72	GO:0031348: negative regulation of defense response	8.05E-03
73	GO:0009845: seed germination	8.07E-03
74	GO:0009625: response to insect	8.56E-03
75	GO:0010227: floral organ abscission	8.56E-03
76	GO:0006284: base-excision repair	9.07E-03
77	GO:0042391: regulation of membrane potential	1.01E-02
78	GO:0006606: protein import into nucleus	1.01E-02
79	GO:0042631: cellular response to water deprivation	1.01E-02
80	GO:0009646: response to absence of light	1.12E-02
81	GO:0006623: protein targeting to vacuole	1.18E-02
82	GO:0006470: protein dephosphorylation	1.18E-02
83	GO:0009617: response to bacterium	1.23E-02
84	GO:0050832: defense response to fungus	1.23E-02
85	GO:0010193: response to ozone	1.24E-02
86	GO:0000302: response to reactive oxygen species	1.24E-02
87	GO:0030163: protein catabolic process	1.36E-02
88	GO:0006904: vesicle docking involved in exocytosis	1.48E-02
89	GO:0042128: nitrate assimilation	1.74E-02
90	GO:0006511: ubiquitin-dependent protein catabolic process	1.76E-02
91	GO:0006950: response to stress	1.81E-02
92	GO:0009817: defense response to fungus, incompatible interaction	1.94E-02
93	GO:0080167: response to karrikin	1.99E-02
94	GO:0010311: lateral root formation	2.01E-02
95	GO:0009832: plant-type cell wall biogenesis	2.01E-02
96	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.05E-02
97	GO:0006499: N-terminal protein myristoylation	2.08E-02
98	GO:0009407: toxin catabolic process	2.08E-02
99	GO:0046777: protein autophosphorylation	2.12E-02
100	GO:0048527: lateral root development	2.15E-02
101	GO:0006865: amino acid transport	2.23E-02
102	GO:0009867: jasmonic acid mediated signaling pathway	2.30E-02
103	GO:0006886: intracellular protein transport	2.45E-02
104	GO:0006631: fatty acid metabolic process	2.60E-02
105	GO:0006887: exocytosis	2.60E-02
106	GO:0009793: embryo development ending in seed dormancy	2.64E-02
107	GO:0000209: protein polyubiquitination	2.83E-02
108	GO:0009408: response to heat	2.93E-02
109	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.15E-02
110	GO:0006096: glycolytic process	3.83E-02
111	GO:0015031: protein transport	3.90E-02
112	GO:0009734: auxin-activated signaling pathway	4.12E-02
113	GO:0009409: response to cold	4.22E-02
114	GO:0009553: embryo sac development	4.28E-02
115	GO:0006396: RNA processing	4.47E-02
116	GO:0000398: mRNA splicing, via spliceosome	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0052822: DNA-3-methylguanine glycosylase activity	0.00E+00
2	GO:0043916: DNA-7-methylguanine glycosylase activity	0.00E+00
3	GO:0052821: DNA-7-methyladenine glycosylase activity	0.00E+00
4	GO:0003905: alkylbase DNA N-glycosylase activity	0.00E+00
5	GO:0043021: ribonucleoprotein complex binding	7.96E-07
6	GO:0008519: ammonium transmembrane transporter activity	3.28E-05
7	GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity	1.25E-04
8	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	1.25E-04
9	GO:0004348: glucosylceramidase activity	1.25E-04
10	GO:0031127: alpha-(1,2)-fucosyltransferase activity	1.25E-04
11	GO:0015085: calcium ion transmembrane transporter activity	1.25E-04
12	GO:0005524: ATP binding	1.42E-04
13	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.77E-04
14	GO:0038199: ethylene receptor activity	2.90E-04
15	GO:0019172: glyoxalase III activity	2.90E-04
16	GO:0004594: pantothenate kinase activity	2.90E-04
17	GO:0004617: phosphoglycerate dehydrogenase activity	2.90E-04
18	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	4.78E-04
19	GO:0004557: alpha-galactosidase activity	4.78E-04
20	GO:0003840: gamma-glutamyltransferase activity	4.78E-04
21	GO:0036374: glutathione hydrolase activity	4.78E-04
22	GO:0052692: raffinose alpha-galactosidase activity	4.78E-04
23	GO:0000166: nucleotide binding	5.36E-04
24	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	6.85E-04
25	GO:0051740: ethylene binding	6.85E-04
26	GO:0047134: protein-disulfide reductase activity	7.35E-04
27	GO:0004791: thioredoxin-disulfide reductase activity	9.12E-04
28	GO:0031386: protein tag	1.15E-03
29	GO:0008725: DNA-3-methyladenine glycosylase activity	1.15E-03
30	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.18E-03
31	GO:0016301: kinase activity	1.19E-03
32	GO:0030976: thiamine pyrophosphate binding	1.41E-03
33	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.41E-03
34	GO:0102391: decanoate--CoA ligase activity	1.68E-03
35	GO:0004012: phospholipid-translocating ATPase activity	1.68E-03
36	GO:0004602: glutathione peroxidase activity	1.68E-03
37	GO:0004656: procollagen-proline 4-dioxygenase activity	1.68E-03
38	GO:0003872: 6-phosphofructokinase activity	1.98E-03
39	GO:0008320: protein transmembrane transporter activity	1.98E-03
40	GO:0043295: glutathione binding	1.98E-03
41	GO:0004467: long-chain fatty acid-CoA ligase activity	1.98E-03
42	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	1.98E-03
43	GO:0008235: metalloexopeptidase activity	1.98E-03
44	GO:0017056: structural constituent of nuclear pore	2.29E-03
45	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.29E-03
46	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.65E-03
47	GO:0008417: fucosyltransferase activity	2.95E-03
48	GO:0005487: nucleocytoplasmic transporter activity	3.31E-03
49	GO:0015112: nitrate transmembrane transporter activity	3.31E-03
50	GO:0004713: protein tyrosine kinase activity	3.68E-03
51	GO:0004673: protein histidine kinase activity	3.68E-03
52	GO:0001054: RNA polymerase I activity	4.06E-03
53	GO:0004177: aminopeptidase activity	4.06E-03
54	GO:0008378: galactosyltransferase activity	4.45E-03
55	GO:0005388: calcium-transporting ATPase activity	4.86E-03
56	GO:0031072: heat shock protein binding	4.86E-03
57	GO:0000155: phosphorelay sensor kinase activity	4.86E-03
58	GO:0046872: metal ion binding	5.03E-03
59	GO:0031624: ubiquitin conjugating enzyme binding	5.28E-03
60	GO:0003712: transcription cofactor activity	5.71E-03
61	GO:0004190: aspartic-type endopeptidase activity	5.71E-03
62	GO:0030552: cAMP binding	5.71E-03
63	GO:0030553: cGMP binding	5.71E-03
64	GO:0015035: protein disulfide oxidoreductase activity	6.13E-03
65	GO:0031418: L-ascorbic acid binding	6.61E-03
66	GO:0005528: FK506 binding	6.61E-03
67	GO:0005216: ion channel activity	7.08E-03
68	GO:0033612: receptor serine/threonine kinase binding	7.56E-03
69	GO:0003756: protein disulfide isomerase activity	9.07E-03
70	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	9.60E-03
71	GO:0030551: cyclic nucleotide binding	1.01E-02
72	GO:0005249: voltage-gated potassium channel activity	1.01E-02
73	GO:0004674: protein serine/threonine kinase activity	1.01E-02
74	GO:0004527: exonuclease activity	1.07E-02
75	GO:0008536: Ran GTPase binding	1.07E-02
76	GO:0004872: receptor activity	1.18E-02
77	GO:0016597: amino acid binding	1.54E-02
78	GO:0000287: magnesium ion binding	1.57E-02
79	GO:0043531: ADP binding	1.75E-02
80	GO:0004721: phosphoprotein phosphatase activity	1.81E-02
81	GO:0005516: calmodulin binding	2.00E-02
82	GO:0050897: cobalt ion binding	2.15E-02
83	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.30E-02
84	GO:0003746: translation elongation factor activity	2.30E-02
85	GO:0004722: protein serine/threonine phosphatase activity	2.61E-02
86	GO:0004364: glutathione transferase activity	2.68E-02
87	GO:0015293: symporter activity	2.99E-02
88	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.07E-02
89	GO:0051287: NAD binding	3.15E-02
90	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.40E-02
91	GO:0015171: amino acid transmembrane transporter activity	3.66E-02
92	GO:0031625: ubiquitin protein ligase binding	3.66E-02
93	GO:0051082: unfolded protein binding	4.37E-02
94	GO:0016746: transferase activity, transferring acyl groups	4.47E-02
95	GO:0004672: protein kinase activity	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	2.65E-07
2	GO:0070545: PeBoW complex	7.96E-07
3	GO:0030687: preribosome, large subunit precursor	6.22E-05
4	GO:0031080: nuclear pore outer ring	4.78E-04
5	GO:0070062: extracellular exosome	6.85E-04
6	GO:0005945: 6-phosphofructokinase complex	1.15E-03
7	GO:0032580: Golgi cisterna membrane	1.25E-03
8	GO:0005887: integral component of plasma membrane	1.71E-03
9	GO:0000151: ubiquitin ligase complex	1.93E-03
10	GO:0019005: SCF ubiquitin ligase complex	1.93E-03
11	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.98E-03
12	GO:0005736: DNA-directed RNA polymerase I complex	2.95E-03
13	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.00E-03
14	GO:0017119: Golgi transport complex	3.68E-03
15	GO:0005774: vacuolar membrane	5.08E-03
16	GO:0005834: heterotrimeric G-protein complex	5.28E-03
17	GO:0005783: endoplasmic reticulum	7.11E-03
18	GO:0005744: mitochondrial inner membrane presequence translocase complex	9.07E-03
19	GO:0005829: cytosol	9.94E-03
20	GO:0009506: plasmodesma	1.10E-02
21	GO:0005773: vacuole	1.17E-02
22	GO:0000145: exocyst	1.30E-02
23	GO:0005789: endoplasmic reticulum membrane	1.42E-02
24	GO:0030529: intracellular ribonucleoprotein complex	1.61E-02
25	GO:0000932: P-body	1.61E-02
26	GO:0005788: endoplasmic reticulum lumen	1.67E-02
27	GO:0016021: integral component of membrane	1.87E-02
28	GO:0005802: trans-Golgi network	2.16E-02
29	GO:0005794: Golgi apparatus	2.19E-02
30	GO:0005635: nuclear envelope	3.57E-02
31	GO:0005681: spliceosomal complex	3.83E-02
32	GO:0016607: nuclear speck	3.92E-02