Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G05490

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080164: regulation of nitric oxide metabolic process2.53E-05
2GO:0055063: sulfate ion homeostasis2.53E-05
3GO:0046500: S-adenosylmethionine metabolic process2.53E-05
4GO:0019354: siroheme biosynthetic process2.53E-05
5GO:0071497: cellular response to freezing6.44E-05
6GO:0051592: response to calcium ion6.44E-05
7GO:0000271: polysaccharide biosynthetic process9.42E-05
8GO:0009741: response to brassinosteroid1.03E-04
9GO:0006556: S-adenosylmethionine biosynthetic process1.13E-04
10GO:0009828: plant-type cell wall loosening1.59E-04
11GO:0009826: unidimensional cell growth1.74E-04
12GO:0046345: abscisic acid catabolic process2.30E-04
13GO:0006544: glycine metabolic process2.95E-04
14GO:0006563: L-serine metabolic process3.65E-04
15GO:0006555: methionine metabolic process3.65E-04
16GO:0009612: response to mechanical stimulus4.36E-04
17GO:1901001: negative regulation of response to salt stress4.36E-04
18GO:0051510: regulation of unidimensional cell growth5.11E-04
19GO:0010038: response to metal ion5.11E-04
20GO:0048574: long-day photoperiodism, flowering6.69E-04
21GO:0044030: regulation of DNA methylation6.69E-04
22GO:0010099: regulation of photomorphogenesis6.69E-04
23GO:0006779: porphyrin-containing compound biosynthetic process8.38E-04
24GO:0035999: tetrahydrofolate interconversion8.38E-04
25GO:0043069: negative regulation of programmed cell death9.24E-04
26GO:0000038: very long-chain fatty acid metabolic process1.01E-03
27GO:0018107: peptidyl-threonine phosphorylation1.20E-03
28GO:0034605: cellular response to heat1.30E-03
29GO:0009969: xyloglucan biosynthetic process1.40E-03
30GO:0019953: sexual reproduction1.72E-03
31GO:0006730: one-carbon metabolic process1.95E-03
32GO:0040007: growth2.06E-03
33GO:0019722: calcium-mediated signaling2.18E-03
34GO:0045489: pectin biosynthetic process2.55E-03
35GO:0071472: cellular response to salt stress2.55E-03
36GO:0010268: brassinosteroid homeostasis2.55E-03
37GO:0009646: response to absence of light2.68E-03
38GO:0009791: post-embryonic development2.80E-03
39GO:0016132: brassinosteroid biosynthetic process2.94E-03
40GO:0009409: response to cold2.95E-03
41GO:0010583: response to cyclopentenone3.07E-03
42GO:0009639: response to red or far red light3.34E-03
43GO:0016125: sterol metabolic process3.34E-03
44GO:0007267: cell-cell signaling3.48E-03
45GO:0009751: response to salicylic acid3.56E-03
46GO:0006629: lipid metabolic process3.61E-03
47GO:0001666: response to hypoxia3.77E-03
48GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.91E-03
49GO:0010411: xyloglucan metabolic process4.21E-03
50GO:0048573: photoperiodism, flowering4.21E-03
51GO:0009873: ethylene-activated signaling pathway4.64E-03
52GO:0048767: root hair elongation4.67E-03
53GO:0048527: lateral root development4.99E-03
54GO:0045087: innate immune response5.31E-03
55GO:0016051: carbohydrate biosynthetic process5.31E-03
56GO:0042542: response to hydrogen peroxide6.15E-03
57GO:0031347: regulation of defense response7.22E-03
58GO:0009664: plant-type cell wall organization7.40E-03
59GO:0009809: lignin biosynthetic process7.78E-03
60GO:0006486: protein glycosylation7.78E-03
61GO:0009585: red, far-red light phototransduction7.78E-03
62GO:0016567: protein ubiquitination8.24E-03
63GO:0009909: regulation of flower development8.35E-03
64GO:0018105: peptidyl-serine phosphorylation1.02E-02
65GO:0009742: brassinosteroid mediated signaling pathway1.04E-02
66GO:0009414: response to water deprivation1.26E-02
67GO:0006633: fatty acid biosynthetic process1.37E-02
68GO:0006970: response to osmotic stress2.10E-02
69GO:0009860: pollen tube growth2.10E-02
70GO:0009723: response to ethylene2.21E-02
71GO:0048366: leaf development2.24E-02
72GO:0010200: response to chitin2.38E-02
73GO:0046777: protein autophosphorylation2.44E-02
74GO:0045454: cell redox homeostasis2.64E-02
75GO:0032259: methylation2.98E-02
76GO:0009408: response to heat3.07E-02
77GO:0009753: response to jasmonic acid3.23E-02
78GO:0006357: regulation of transcription from RNA polymerase II promoter3.75E-02
79GO:0009738: abscisic acid-activated signaling pathway4.51E-02
80GO:0035556: intracellular signal transduction4.80E-02
RankGO TermAdjusted P value
1GO:0004851: uroporphyrin-III C-methyltransferase activity0.00E+00
2GO:0080132: fatty acid alpha-hydroxylase activity2.53E-05
3GO:0010295: (+)-abscisic acid 8'-hydroxylase activity1.13E-04
4GO:0004478: methionine adenosyltransferase activity1.13E-04
5GO:0033843: xyloglucan 6-xylosyltransferase activity1.69E-04
6GO:0004372: glycine hydroxymethyltransferase activity2.95E-04
7GO:0035252: UDP-xylosyltransferase activity3.65E-04
8GO:0016758: transferase activity, transferring hexosyl groups9.37E-04
9GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.95E-03
10GO:0004806: triglyceride lipase activity4.21E-03
11GO:0016298: lipase activity7.97E-03
12GO:0016757: transferase activity, transferring glycosyl groups9.49E-03
13GO:0005516: calmodulin binding9.59E-03
14GO:0015035: protein disulfide oxidoreductase activity1.02E-02
15GO:0030170: pyridoxal phosphate binding1.25E-02
16GO:0005506: iron ion binding1.27E-02
17GO:0044212: transcription regulatory region DNA binding1.29E-02
18GO:0043565: sequence-specific DNA binding1.59E-02
19GO:0004672: protein kinase activity1.90E-02
20GO:0008168: methyltransferase activity1.94E-02
21GO:0061630: ubiquitin protein ligase activity2.41E-02
22GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting2.64E-02
23GO:0004871: signal transducer activity2.73E-02
24GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding2.85E-02
25GO:0009055: electron carrier activity3.23E-02
RankGO TermAdjusted P value
1GO:0005615: extracellular space1.16E-04
2GO:0009505: plant-type cell wall4.25E-04
3GO:0005794: Golgi apparatus1.84E-03
4GO:0015629: actin cytoskeleton2.06E-03
5GO:0048046: apoplast2.12E-03
6GO:0009506: plasmodesma3.98E-03
7GO:0005576: extracellular region7.16E-03
8GO:0005618: cell wall1.15E-02
9GO:0000139: Golgi membrane1.75E-02
10GO:0005886: plasma membrane3.44E-02
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Gene type



Gene DE type