co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G05360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046109: uridine biosynthetic process	0.00E+00
2	GO:0051238: sequestering of metal ion	0.00E+00
3	GO:0006182: cGMP biosynthetic process	0.00E+00
4	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
5	GO:0010055: atrichoblast differentiation	0.00E+00
6	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
7	GO:0006536: glutamate metabolic process	2.51E-05
8	GO:0009620: response to fungus	1.74E-04
9	GO:0006562: proline catabolic process	1.82E-04
10	GO:0032107: regulation of response to nutrient levels	1.82E-04
11	GO:0051938: L-glutamate import	1.82E-04
12	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.82E-04
13	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.82E-04
14	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.82E-04
15	GO:0009817: defense response to fungus, incompatible interaction	3.52E-04
16	GO:0009407: toxin catabolic process	4.00E-04
17	GO:0043066: negative regulation of apoptotic process	4.10E-04
18	GO:0043091: L-arginine import	4.10E-04
19	GO:0010133: proline catabolic process to glutamate	4.10E-04
20	GO:0015802: basic amino acid transport	4.10E-04
21	GO:0009805: coumarin biosynthetic process	4.10E-04
22	GO:0009866: induced systemic resistance, ethylene mediated signaling pathway	4.10E-04
23	GO:0007165: signal transduction	4.81E-04
24	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	6.69E-04
25	GO:0009636: response to toxic substance	7.65E-04
26	GO:0006874: cellular calcium ion homeostasis	7.90E-04
27	GO:0006537: glutamate biosynthetic process	9.55E-04
28	GO:0009052: pentose-phosphate shunt, non-oxidative branch	9.55E-04
29	GO:0033169: histone H3-K9 demethylation	9.55E-04
30	GO:0070301: cellular response to hydrogen peroxide	9.55E-04
31	GO:1901002: positive regulation of response to salt stress	1.27E-03
32	GO:0045227: capsule polysaccharide biosynthetic process	1.27E-03
33	GO:0033358: UDP-L-arabinose biosynthetic process	1.27E-03
34	GO:0010200: response to chitin	1.38E-03
35	GO:0006468: protein phosphorylation	1.59E-03
36	GO:0006561: proline biosynthetic process	1.98E-03
37	GO:0010942: positive regulation of cell death	1.98E-03
38	GO:0015691: cadmium ion transport	1.98E-03
39	GO:0051607: defense response to virus	2.32E-03
40	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.38E-03
41	GO:1900057: positive regulation of leaf senescence	2.80E-03
42	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	2.80E-03
43	GO:1900056: negative regulation of leaf senescence	2.80E-03
44	GO:0050829: defense response to Gram-negative bacterium	2.80E-03
45	GO:0010150: leaf senescence	2.96E-03
46	GO:0008219: cell death	3.20E-03
47	GO:0009850: auxin metabolic process	3.24E-03
48	GO:0007166: cell surface receptor signaling pathway	3.51E-03
49	GO:0010120: camalexin biosynthetic process	3.71E-03
50	GO:0009617: response to bacterium	3.71E-03
51	GO:0009699: phenylpropanoid biosynthetic process	3.71E-03
52	GO:0009056: catabolic process	4.20E-03
53	GO:0006952: defense response	4.99E-03
54	GO:0009688: abscisic acid biosynthetic process	5.24E-03
55	GO:0009682: induced systemic resistance	5.79E-03
56	GO:0006855: drug transmembrane transport	6.08E-03
57	GO:0006790: sulfur compound metabolic process	6.35E-03
58	GO:0055046: microgametogenesis	6.94E-03
59	GO:0009718: anthocyanin-containing compound biosynthetic process	6.94E-03
60	GO:0009809: lignin biosynthetic process	7.02E-03
61	GO:0070588: calcium ion transmembrane transport	8.18E-03
62	GO:0046854: phosphatidylinositol phosphorylation	8.18E-03
63	GO:0009969: xyloglucan biosynthetic process	8.18E-03
64	GO:0009225: nucleotide-sugar metabolic process	8.18E-03
65	GO:0005992: trehalose biosynthetic process	9.48E-03
66	GO:0032259: methylation	1.05E-02
67	GO:0050832: defense response to fungus	1.05E-02
68	GO:0003333: amino acid transmembrane transport	1.09E-02
69	GO:0016998: cell wall macromolecule catabolic process	1.09E-02
70	GO:0071456: cellular response to hypoxia	1.16E-02
71	GO:0019748: secondary metabolic process	1.16E-02
72	GO:0010227: floral organ abscission	1.23E-02
73	GO:0006012: galactose metabolic process	1.23E-02
74	GO:0009561: megagametogenesis	1.31E-02
75	GO:0006885: regulation of pH	1.54E-02
76	GO:0042752: regulation of circadian rhythm	1.62E-02
77	GO:0009851: auxin biosynthetic process	1.70E-02
78	GO:0006623: protein targeting to vacuole	1.70E-02
79	GO:0002229: defense response to oomycetes	1.79E-02
80	GO:0010252: auxin homeostasis	2.05E-02
81	GO:0006904: vesicle docking involved in exocytosis	2.14E-02
82	GO:0009615: response to virus	2.32E-02
83	GO:0009607: response to biotic stimulus	2.42E-02
84	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.42E-02
85	GO:0009627: systemic acquired resistance	2.51E-02
86	GO:0030244: cellulose biosynthetic process	2.81E-02
87	GO:0009832: plant-type cell wall biogenesis	2.91E-02
88	GO:0006499: N-terminal protein myristoylation	3.01E-02
89	GO:0048527: lateral root development	3.11E-02
90	GO:0045087: innate immune response	3.32E-02
91	GO:0006887: exocytosis	3.76E-02
92	GO:0051707: response to other organism	3.98E-02
93	GO:0007275: multicellular organism development	4.43E-02
94	GO:0006812: cation transport	4.68E-02
95	GO:0009664: plant-type cell wall organization	4.68E-02
96	GO:0042538: hyperosmotic salinity response	4.68E-02
97	GO:0009751: response to salicylic acid	4.82E-02
98	GO:0006486: protein glycosylation	4.92E-02
99	GO:0006813: potassium ion transport	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:1990837: sequence-specific double-stranded DNA binding	0.00E+00
2	GO:0016301: kinase activity	2.88E-06
3	GO:0004351: glutamate decarboxylase activity	1.35E-05
4	GO:0004657: proline dehydrogenase activity	1.82E-04
5	GO:0031127: alpha-(1,2)-fucosyltransferase activity	1.82E-04
6	GO:0008171: O-methyltransferase activity	3.05E-04
7	GO:0032454: histone demethylase activity (H3-K9 specific)	4.10E-04
8	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.25E-04
9	GO:0004970: ionotropic glutamate receptor activity	5.83E-04
10	GO:0005217: intracellular ligand-gated ion channel activity	5.83E-04
11	GO:0004364: glutathione transferase activity	6.28E-04
12	GO:0042409: caffeoyl-CoA O-methyltransferase activity	6.69E-04
13	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.69E-04
14	GO:0004751: ribose-5-phosphate isomerase activity	6.69E-04
15	GO:0004383: guanylate cyclase activity	6.69E-04
16	GO:0016595: glutamate binding	6.69E-04
17	GO:0010178: IAA-amino acid conjugate hydrolase activity	9.55E-04
18	GO:0015189: L-lysine transmembrane transporter activity	9.55E-04
19	GO:0015181: arginine transmembrane transporter activity	9.55E-04
20	GO:0004031: aldehyde oxidase activity	1.27E-03
21	GO:0050302: indole-3-acetaldehyde oxidase activity	1.27E-03
22	GO:0010279: indole-3-acetic acid amido synthetase activity	1.27E-03
23	GO:0009916: alternative oxidase activity	1.27E-03
24	GO:0050373: UDP-arabinose 4-epimerase activity	1.27E-03
25	GO:0005313: L-glutamate transmembrane transporter activity	1.27E-03
26	GO:0004866: endopeptidase inhibitor activity	1.98E-03
27	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.38E-03
28	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.38E-03
29	GO:0003978: UDP-glucose 4-epimerase activity	2.38E-03
30	GO:0005516: calmodulin binding	2.73E-03
31	GO:0005085: guanyl-nucleotide exchange factor activity	2.80E-03
32	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	2.80E-03
33	GO:0015238: drug transmembrane transporter activity	3.36E-03
34	GO:0030145: manganese ion binding	3.70E-03
35	GO:0008417: fucosyltransferase activity	4.20E-03
36	GO:0031490: chromatin DNA binding	4.71E-03
37	GO:0015174: basic amino acid transmembrane transporter activity	4.71E-03
38	GO:0050660: flavin adenine dinucleotide binding	6.20E-03
39	GO:0000976: transcription regulatory region sequence-specific DNA binding	6.35E-03
40	GO:0005388: calcium-transporting ATPase activity	6.94E-03
41	GO:0045735: nutrient reservoir activity	8.30E-03
42	GO:0001046: core promoter sequence-specific DNA binding	9.48E-03
43	GO:0004674: protein serine/threonine kinase activity	1.04E-02
44	GO:0009055: electron carrier activity	1.22E-02
45	GO:0005524: ATP binding	1.32E-02
46	GO:0030170: pyridoxal phosphate binding	1.39E-02
47	GO:0005451: monovalent cation:proton antiporter activity	1.46E-02
48	GO:0005509: calcium ion binding	1.46E-02
49	GO:0005199: structural constituent of cell wall	1.54E-02
50	GO:0008080: N-acetyltransferase activity	1.54E-02
51	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.62E-02
52	GO:0015299: solute:proton antiporter activity	1.62E-02
53	GO:0015297: antiporter activity	1.66E-02
54	GO:0019901: protein kinase binding	1.70E-02
55	GO:0015385: sodium:proton antiporter activity	1.96E-02
56	GO:0008237: metallopeptidase activity	2.14E-02
57	GO:0051213: dioxygenase activity	2.32E-02
58	GO:0030247: polysaccharide binding	2.61E-02
59	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.71E-02
60	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.32E-02
61	GO:0030246: carbohydrate binding	3.33E-02
62	GO:0052689: carboxylic ester hydrolase activity	3.68E-02
63	GO:0051537: 2 iron, 2 sulfur cluster binding	4.21E-02

Rank	GO Term	Adjusted P value
1	GO:0016021: integral component of membrane	1.87E-05
2	GO:0005886: plasma membrane	1.89E-04
3	GO:0009530: primary cell wall	6.69E-04
4	GO:0070062: extracellular exosome	9.55E-04
5	GO:0005770: late endosome	1.39E-03
6	GO:0032588: trans-Golgi network membrane	1.98E-03
7	GO:0032580: Golgi cisterna membrane	2.07E-03
8	GO:0070469: respiratory chain	1.02E-02
9	GO:0000145: exocyst	1.87E-02
10	GO:0000785: chromatin	1.87E-02
11	GO:0071944: cell periphery	1.96E-02
12	GO:0000325: plant-type vacuole	3.11E-02
13	GO:0005576: extracellular region	3.28E-02
14	GO:0090406: pollen tube	3.98E-02
15	GO:0048046: apoplast	4.16E-02
16	GO:0031966: mitochondrial membrane	4.68E-02
17	GO:0005618: cell wall	4.78E-02