co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G05350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
2	GO:0090042: tubulin deacetylation	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
5	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
6	GO:0042820: vitamin B6 catabolic process	0.00E+00
7	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
8	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
9	GO:0042821: pyridoxal biosynthetic process	0.00E+00
10	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
11	GO:0009773: photosynthetic electron transport in photosystem I	1.53E-12
12	GO:0006000: fructose metabolic process	3.12E-09
13	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.96E-07
14	GO:0006002: fructose 6-phosphate metabolic process	1.34E-06
15	GO:0031022: nuclear migration along microfilament	2.99E-06
16	GO:0009658: chloroplast organization	3.71E-06
17	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.04E-06
18	GO:0006094: gluconeogenesis	7.37E-06
19	GO:0009904: chloroplast accumulation movement	2.18E-05
20	GO:0009903: chloroplast avoidance movement	4.63E-05
21	GO:0009704: de-etiolation	8.08E-05
22	GO:0071277: cellular response to calcium ion	1.25E-04
23	GO:0009443: pyridoxal 5'-phosphate salvage	1.25E-04
24	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	1.25E-04
25	GO:0043609: regulation of carbon utilization	1.25E-04
26	GO:0010362: negative regulation of anion channel activity by blue light	1.25E-04
27	GO:1900865: chloroplast RNA modification	1.51E-04
28	GO:0009853: photorespiration	2.44E-04
29	GO:0005986: sucrose biosynthetic process	2.77E-04
30	GO:0034755: iron ion transmembrane transport	2.90E-04
31	GO:0080005: photosystem stoichiometry adjustment	2.90E-04
32	GO:0097054: L-glutamate biosynthetic process	2.90E-04
33	GO:1904143: positive regulation of carotenoid biosynthetic process	2.90E-04
34	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.90E-04
35	GO:0000913: preprophase band assembly	4.78E-04
36	GO:0009416: response to light stimulus	5.36E-04
37	GO:0006537: glutamate biosynthetic process	6.85E-04
38	GO:0010731: protein glutathionylation	6.85E-04
39	GO:0043572: plastid fission	6.85E-04
40	GO:0009152: purine ribonucleotide biosynthetic process	6.85E-04
41	GO:0046653: tetrahydrofolate metabolic process	6.85E-04
42	GO:0015979: photosynthesis	7.35E-04
43	GO:0009902: chloroplast relocation	9.08E-04
44	GO:0010021: amylopectin biosynthetic process	9.08E-04
45	GO:0019676: ammonia assimilation cycle	9.08E-04
46	GO:0019464: glycine decarboxylation via glycine cleavage system	9.08E-04
47	GO:0045727: positive regulation of translation	9.08E-04
48	GO:0015994: chlorophyll metabolic process	9.08E-04
49	GO:0007018: microtubule-based movement	9.12E-04
50	GO:0016032: viral process	1.11E-03
51	GO:0006544: glycine metabolic process	1.15E-03
52	GO:0032543: mitochondrial translation	1.15E-03
53	GO:0009247: glycolipid biosynthetic process	1.15E-03
54	GO:0010190: cytochrome b6f complex assembly	1.41E-03
55	GO:0006563: L-serine metabolic process	1.41E-03
56	GO:0048827: phyllome development	1.41E-03
57	GO:0042549: photosystem II stabilization	1.41E-03
58	GO:0016554: cytidine to uridine editing	1.41E-03
59	GO:0010027: thylakoid membrane organization	1.48E-03
60	GO:1901259: chloroplast rRNA processing	1.68E-03
61	GO:0006458: 'de novo' protein folding	1.68E-03
62	GO:0042026: protein refolding	1.68E-03
63	GO:0018298: protein-chromophore linkage	1.93E-03
64	GO:0009645: response to low light intensity stimulus	1.98E-03
65	GO:0009735: response to cytokinin	2.24E-03
66	GO:0019375: galactolipid biosynthetic process	2.29E-03
67	GO:0032544: plastid translation	2.61E-03
68	GO:0017004: cytochrome complex assembly	2.61E-03
69	GO:0071482: cellular response to light stimulus	2.61E-03
70	GO:0009657: plastid organization	2.61E-03
71	GO:0010206: photosystem II repair	2.95E-03
72	GO:0090333: regulation of stomatal closure	2.95E-03
73	GO:0000373: Group II intron splicing	2.95E-03
74	GO:0006098: pentose-phosphate shunt	2.95E-03
75	GO:0009638: phototropism	3.31E-03
76	GO:0035999: tetrahydrofolate interconversion	3.31E-03
77	GO:0006810: transport	3.61E-03
78	GO:0046777: protein autophosphorylation	3.82E-03
79	GO:0006508: proteolysis	4.02E-03
80	GO:0006415: translational termination	4.06E-03
81	GO:0006879: cellular iron ion homeostasis	4.06E-03
82	GO:0009750: response to fructose	4.06E-03
83	GO:0006364: rRNA processing	4.20E-03
84	GO:0005983: starch catabolic process	4.45E-03
85	GO:0010628: positive regulation of gene expression	4.86E-03
86	GO:0010229: inflorescence development	4.86E-03
87	GO:0019253: reductive pentose-phosphate cycle	5.28E-03
88	GO:0010207: photosystem II assembly	5.28E-03
89	GO:0010540: basipetal auxin transport	5.28E-03
90	GO:0006541: glutamine metabolic process	5.28E-03
91	GO:0010020: chloroplast fission	5.28E-03
92	GO:0005985: sucrose metabolic process	5.71E-03
93	GO:0010025: wax biosynthetic process	6.15E-03
94	GO:0009768: photosynthesis, light harvesting in photosystem I	7.08E-03
95	GO:0016575: histone deacetylation	7.08E-03
96	GO:0006418: tRNA aminoacylation for protein translation	7.08E-03
97	GO:0061077: chaperone-mediated protein folding	7.56E-03
98	GO:0009793: embryo development ending in seed dormancy	7.97E-03
99	GO:0016226: iron-sulfur cluster assembly	8.05E-03
100	GO:0009790: embryo development	8.71E-03
101	GO:0010118: stomatal movement	1.01E-02
102	GO:0007623: circadian rhythm	1.03E-02
103	GO:0009451: RNA modification	1.05E-02
104	GO:0009741: response to brassinosteroid	1.07E-02
105	GO:0006814: sodium ion transport	1.12E-02
106	GO:0009646: response to absence of light	1.12E-02
107	GO:0048825: cotyledon development	1.18E-02
108	GO:0019252: starch biosynthetic process	1.18E-02
109	GO:0009791: post-embryonic development	1.18E-02
110	GO:0080156: mitochondrial mRNA modification	1.24E-02
111	GO:0032502: developmental process	1.30E-02
112	GO:0071805: potassium ion transmembrane transport	1.48E-02
113	GO:0000910: cytokinesis	1.54E-02
114	GO:0001666: response to hypoxia	1.61E-02
115	GO:0009911: positive regulation of flower development	1.61E-02
116	GO:0016311: dephosphorylation	1.87E-02
117	GO:0080167: response to karrikin	1.99E-02
118	GO:0000160: phosphorelay signal transduction system	2.01E-02
119	GO:0006499: N-terminal protein myristoylation	2.08E-02
120	GO:0009637: response to blue light	2.30E-02
121	GO:0009744: response to sucrose	2.75E-02
122	GO:0032259: methylation	2.81E-02
123	GO:0009644: response to high light intensity	2.91E-02
124	GO:0009636: response to toxic substance	2.99E-02
125	GO:0008152: metabolic process	3.23E-02
126	GO:0006813: potassium ion transport	3.40E-02
127	GO:0006417: regulation of translation	3.66E-02
128	GO:0006096: glycolytic process	3.83E-02
129	GO:0009626: plant-type hypersensitive response	4.01E-02
130	GO:0009409: response to cold	4.22E-02
131	GO:0018105: peptidyl-serine phosphorylation	4.47E-02
132	GO:0006396: RNA processing	4.47E-02
133	GO:0009742: brassinosteroid mediated signaling pathway	4.56E-02
134	GO:0005975: carbohydrate metabolic process	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
2	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
3	GO:0043014: alpha-tubulin binding	0.00E+00
4	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
5	GO:0004823: leucine-tRNA ligase activity	0.00E+00
6	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
7	GO:0051721: protein phosphatase 2A binding	0.00E+00
8	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
9	GO:0042903: tubulin deacetylase activity	0.00E+00
10	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.96E-07
11	GO:0004033: aldo-keto reductase (NADP) activity	9.09E-07
12	GO:0004222: metalloendopeptidase activity	1.04E-05
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.33E-05
14	GO:0004856: xylulokinase activity	1.25E-04
15	GO:0008242: omega peptidase activity	1.25E-04
16	GO:0016041: glutamate synthase (ferredoxin) activity	1.25E-04
17	GO:0003867: 4-aminobutyrate transaminase activity	1.25E-04
18	GO:0008967: phosphoglycolate phosphatase activity	2.90E-04
19	GO:0034722: gamma-glutamyl-peptidase activity	2.90E-04
20	GO:0047746: chlorophyllase activity	2.90E-04
21	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	2.90E-04
22	GO:0033201: alpha-1,4-glucan synthase activity	2.90E-04
23	GO:0008266: poly(U) RNA binding	3.14E-04
24	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	4.78E-04
25	GO:0070402: NADPH binding	4.78E-04
26	GO:0008864: formyltetrahydrofolate deformylase activity	4.78E-04
27	GO:0004373: glycogen (starch) synthase activity	4.78E-04
28	GO:0002161: aminoacyl-tRNA editing activity	4.78E-04
29	GO:0015079: potassium ion transmembrane transporter activity	4.81E-04
30	GO:0035250: UDP-galactosyltransferase activity	6.85E-04
31	GO:0048487: beta-tubulin binding	6.85E-04
32	GO:0016149: translation release factor activity, codon specific	6.85E-04
33	GO:0009882: blue light photoreceptor activity	6.85E-04
34	GO:0008508: bile acid:sodium symporter activity	6.85E-04
35	GO:0009011: starch synthase activity	9.08E-04
36	GO:0048038: quinone binding	1.04E-03
37	GO:0004372: glycine hydroxymethyltransferase activity	1.15E-03
38	GO:0051538: 3 iron, 4 sulfur cluster binding	1.15E-03
39	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.15E-03
40	GO:0004519: endonuclease activity	1.22E-03
41	GO:0008237: metallopeptidase activity	1.32E-03
42	GO:2001070: starch binding	1.41E-03
43	GO:0004332: fructose-bisphosphate aldolase activity	1.41E-03
44	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.68E-03
45	GO:0043022: ribosome binding	2.29E-03
46	GO:0008135: translation factor activity, RNA binding	2.61E-03
47	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	2.61E-03
48	GO:0003747: translation release factor activity	2.95E-03
49	GO:0003723: RNA binding	3.21E-03
50	GO:0005381: iron ion transmembrane transporter activity	3.31E-03
51	GO:0005524: ATP binding	3.56E-03
52	GO:0044183: protein binding involved in protein folding	4.06E-03
53	GO:0015386: potassium:proton antiporter activity	4.06E-03
54	GO:0003777: microtubule motor activity	4.64E-03
55	GO:0004022: alcohol dehydrogenase (NAD) activity	4.86E-03
56	GO:0000155: phosphorelay sensor kinase activity	4.86E-03
57	GO:0031409: pigment binding	6.15E-03
58	GO:0051536: iron-sulfur cluster binding	6.61E-03
59	GO:0004407: histone deacetylase activity	6.61E-03
60	GO:0019843: rRNA binding	7.46E-03
61	GO:0004176: ATP-dependent peptidase activity	7.56E-03
62	GO:0003824: catalytic activity	8.63E-03
63	GO:0004812: aminoacyl-tRNA ligase activity	9.60E-03
64	GO:0016887: ATPase activity	1.00E-02
65	GO:0008017: microtubule binding	1.08E-02
66	GO:0010181: FMN binding	1.12E-02
67	GO:0050662: coenzyme binding	1.12E-02
68	GO:0046872: metal ion binding	1.13E-02
69	GO:0004518: nuclease activity	1.30E-02
70	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.31E-02
71	GO:0008168: methyltransferase activity	1.54E-02
72	GO:0016168: chlorophyll binding	1.67E-02
73	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.74E-02
74	GO:0004721: phosphoprotein phosphatase activity	1.81E-02
75	GO:0004683: calmodulin-dependent protein kinase activity	1.81E-02
76	GO:0008236: serine-type peptidase activity	1.87E-02
77	GO:0003746: translation elongation factor activity	2.30E-02
78	GO:0016787: hydrolase activity	2.35E-02
79	GO:0004364: glutathione transferase activity	2.68E-02
80	GO:0043621: protein self-association	2.91E-02
81	GO:0005198: structural molecule activity	2.99E-02
82	GO:0016491: oxidoreductase activity	4.07E-02
83	GO:0051082: unfolded protein binding	4.37E-02
84	GO:0016301: kinase activity	4.38E-02
85	GO:0004672: protein kinase activity	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0000408: EKC/KEOPS complex	0.00E+00
4	GO:0009507: chloroplast	2.41E-35
5	GO:0009570: chloroplast stroma	1.54E-17
6	GO:0009941: chloroplast envelope	1.51E-15
7	GO:0009535: chloroplast thylakoid membrane	1.19E-13
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.60E-11
9	GO:0009534: chloroplast thylakoid	4.91E-10
10	GO:0009706: chloroplast inner membrane	8.18E-05
11	GO:0010287: plastoglobule	1.11E-04
12	GO:0009782: photosystem I antenna complex	1.25E-04
13	GO:0009579: thylakoid	7.35E-04
14	GO:0005871: kinesin complex	7.35E-04
15	GO:0010319: stromule	1.32E-03
16	GO:0009501: amyloplast	2.29E-03
17	GO:0009536: plastid	2.63E-03
18	GO:0048046: apoplast	5.59E-03
19	GO:0030076: light-harvesting complex	5.71E-03
20	GO:0042651: thylakoid membrane	7.08E-03
21	GO:0005623: cell	7.66E-03
22	GO:0005886: plasma membrane	8.58E-03
23	GO:0005759: mitochondrial matrix	9.37E-03
24	GO:0005770: late endosome	1.07E-02
25	GO:0016021: integral component of membrane	1.10E-02
26	GO:0009504: cell plate	1.18E-02
27	GO:0005694: chromosome	1.30E-02
28	GO:0016020: membrane	1.54E-02
29	GO:0030529: intracellular ribonucleoprotein complex	1.61E-02
30	GO:0005874: microtubule	1.92E-02
31	GO:0031969: chloroplast membrane	1.99E-02
32	GO:0005819: spindle	2.45E-02
33	GO:0031977: thylakoid lumen	2.60E-02
34	GO:0043231: intracellular membrane-bounded organelle	3.23E-02