Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G05090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
2GO:0006182: cGMP biosynthetic process0.00E+00
3GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
4GO:0008202: steroid metabolic process3.18E-05
5GO:1901183: positive regulation of camalexin biosynthetic process4.45E-05
6GO:0048363: mucilage pectin metabolic process4.45E-05
7GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.45E-05
8GO:0043066: negative regulation of apoptotic process1.10E-04
9GO:0015865: purine nucleotide transport1.10E-04
10GO:0019441: tryptophan catabolic process to kynurenine1.10E-04
11GO:0018022: peptidyl-lysine methylation1.10E-04
12GO:0010116: positive regulation of abscisic acid biosynthetic process2.78E-04
13GO:0046902: regulation of mitochondrial membrane permeability2.78E-04
14GO:0009399: nitrogen fixation2.78E-04
15GO:0080001: mucilage extrusion from seed coat2.78E-04
16GO:0006542: glutamine biosynthetic process3.73E-04
17GO:0007029: endoplasmic reticulum organization4.75E-04
18GO:1900425: negative regulation of defense response to bacterium5.82E-04
19GO:0006014: D-ribose metabolic process5.82E-04
20GO:1902074: response to salt8.11E-04
21GO:1900150: regulation of defense response to fungus9.32E-04
22GO:0010120: camalexin biosynthetic process1.06E-03
23GO:0030968: endoplasmic reticulum unfolded protein response1.06E-03
24GO:0009808: lignin metabolic process1.06E-03
25GO:0009827: plant-type cell wall modification1.06E-03
26GO:0048364: root development1.07E-03
27GO:0007338: single fertilization1.19E-03
28GO:0009688: abscisic acid biosynthetic process1.47E-03
29GO:0043069: negative regulation of programmed cell death1.47E-03
30GO:0006468: protein phosphorylation1.54E-03
31GO:0071365: cellular response to auxin stimulus1.77E-03
32GO:0000266: mitochondrial fission1.77E-03
33GO:0070588: calcium ion transmembrane transport2.25E-03
34GO:0010167: response to nitrate2.25E-03
35GO:0000162: tryptophan biosynthetic process2.42E-03
36GO:0034976: response to endoplasmic reticulum stress2.42E-03
37GO:0010150: leaf senescence2.63E-03
38GO:0042391: regulation of membrane potential3.93E-03
39GO:0009749: response to glucose4.56E-03
40GO:0019252: starch biosynthetic process4.56E-03
41GO:0009851: auxin biosynthetic process4.56E-03
42GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.18E-03
43GO:1901657: glycosyl compound metabolic process5.22E-03
44GO:0046777: protein autophosphorylation5.35E-03
45GO:0009567: double fertilization forming a zygote and endosperm5.45E-03
46GO:0010252: auxin homeostasis5.45E-03
47GO:0009607: response to biotic stimulus6.39E-03
48GO:0009816: defense response to bacterium, incompatible interaction6.39E-03
49GO:0006869: lipid transport6.56E-03
50GO:0042128: nitrate assimilation6.64E-03
51GO:0009751: response to salicylic acid7.27E-03
52GO:0008219: cell death7.39E-03
53GO:0009817: defense response to fungus, incompatible interaction7.39E-03
54GO:0009407: toxin catabolic process7.91E-03
55GO:0006839: mitochondrial transport9.55E-03
56GO:0006897: endocytosis9.83E-03
57GO:0000209: protein polyubiquitination1.07E-02
58GO:0009636: response to toxic substance1.13E-02
59GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.19E-02
60GO:0009809: lignin biosynthetic process1.28E-02
61GO:0048367: shoot system development1.48E-02
62GO:0009620: response to fungus1.55E-02
63GO:0009742: brassinosteroid mediated signaling pathway1.72E-02
64GO:0009790: embryo development2.16E-02
65GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.63E-02
66GO:0007166: cell surface receptor signaling pathway2.68E-02
67GO:0008380: RNA splicing2.76E-02
68GO:0009617: response to bacterium2.76E-02
69GO:0009733: response to auxin2.99E-02
70GO:0045944: positive regulation of transcription from RNA polymerase II promoter3.14E-02
71GO:0009826: unidimensional cell growth3.23E-02
72GO:0006970: response to osmotic stress3.50E-02
73GO:0007049: cell cycle3.59E-02
74GO:0080167: response to karrikin3.87E-02
75GO:0016192: vesicle-mediated transport4.01E-02
76GO:0006952: defense response4.37E-02
77GO:0045454: cell redox homeostasis4.40E-02
78GO:0006886: intracellular protein transport4.50E-02
79GO:0032259: methylation4.95E-02
80GO:0016042: lipid catabolic process5.00E-02
RankGO TermAdjusted P value
1GO:0008142: oxysterol binding2.05E-05
2GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity4.45E-05
3GO:0004061: arylformamidase activity1.10E-04
4GO:0032934: sterol binding1.10E-04
5GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding1.10E-04
6GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.89E-04
7GO:0004383: guanylate cyclase activity1.89E-04
8GO:0016595: glutamate binding1.89E-04
9GO:0004031: aldehyde oxidase activity3.73E-04
10GO:0050302: indole-3-acetaldehyde oxidase activity3.73E-04
11GO:0010279: indole-3-acetic acid amido synthetase activity3.73E-04
12GO:0016279: protein-lysine N-methyltransferase activity3.73E-04
13GO:0004834: tryptophan synthase activity3.73E-04
14GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.73E-04
15GO:0005471: ATP:ADP antiporter activity4.75E-04
16GO:0004356: glutamate-ammonia ligase activity4.75E-04
17GO:0005516: calmodulin binding5.89E-04
18GO:0004674: protein serine/threonine kinase activity6.36E-04
19GO:0004747: ribokinase activity6.94E-04
20GO:0008865: fructokinase activity9.32E-04
21GO:0004630: phospholipase D activity1.06E-03
22GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity1.06E-03
23GO:0071949: FAD binding1.19E-03
24GO:0008171: O-methyltransferase activity1.47E-03
25GO:0004713: protein tyrosine kinase activity1.47E-03
26GO:0004672: protein kinase activity1.63E-03
27GO:0004521: endoribonuclease activity1.77E-03
28GO:0005524: ATP binding1.84E-03
29GO:0005388: calcium-transporting ATPase activity1.92E-03
30GO:0016301: kinase activity2.21E-03
31GO:0030552: cAMP binding2.25E-03
32GO:0030553: cGMP binding2.25E-03
33GO:0005216: ion channel activity2.77E-03
34GO:0003756: protein disulfide isomerase activity3.53E-03
35GO:0005249: voltage-gated potassium channel activity3.93E-03
36GO:0030551: cyclic nucleotide binding3.93E-03
37GO:0016853: isomerase activity4.35E-03
38GO:0010181: FMN binding4.35E-03
39GO:0102483: scopolin beta-glucosidase activity6.89E-03
40GO:0030247: polysaccharide binding6.89E-03
41GO:0016614: oxidoreductase activity, acting on CH-OH group of donors8.18E-03
42GO:0008422: beta-glucosidase activity9.27E-03
43GO:0004364: glutathione transferase activity1.01E-02
44GO:0008289: lipid binding1.03E-02
45GO:0051537: 2 iron, 2 sulfur cluster binding1.10E-02
46GO:0035091: phosphatidylinositol binding1.10E-02
47GO:0008234: cysteine-type peptidase activity1.38E-02
48GO:0008017: microtubule binding2.51E-02
49GO:0050660: flavin adenine dinucleotide binding3.68E-02
50GO:0004497: monooxygenase activity3.87E-02
51GO:0061630: ubiquitin protein ligase activity4.01E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane1.79E-05
2GO:0016021: integral component of membrane1.57E-04
3GO:0042406: extrinsic component of endoplasmic reticulum membrane1.89E-04
4GO:0030131: clathrin adaptor complex9.32E-04
5GO:0030125: clathrin vesicle coat1.47E-03
6GO:0005905: clathrin-coated pit2.96E-03
7GO:0031410: cytoplasmic vesicle3.14E-03
8GO:0005783: endoplasmic reticulum4.78E-03
9GO:0005829: cytosol4.94E-03
10GO:0005788: endoplasmic reticulum lumen6.39E-03
11GO:0005887: integral component of plasma membrane1.00E-02
12GO:0012505: endomembrane system1.61E-02
13GO:0009524: phragmoplast2.01E-02
14GO:0005774: vacuolar membrane2.44E-02
15GO:0005618: cell wall2.88E-02
16GO:0005874: microtubule3.78E-02
17GO:0005773: vacuole4.14E-02
18GO:0005743: mitochondrial inner membrane4.85E-02
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Gene type



Gene DE type