GO Enrichment Analysis of Co-expressed Genes with
AT3G04870
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090393: sepal giant cell development | 0.00E+00 |
| 2 | GO:0036172: thiamine salvage | 0.00E+00 |
| 3 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 4 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 5 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.99E-11 |
| 6 | GO:0009853: photorespiration | 1.67E-07 |
| 7 | GO:0031022: nuclear migration along microfilament | 1.89E-06 |
| 8 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 4.47E-06 |
| 9 | GO:0006546: glycine catabolic process | 8.50E-06 |
| 10 | GO:0009902: chloroplast relocation | 8.50E-06 |
| 11 | GO:0009903: chloroplast avoidance movement | 3.05E-05 |
| 12 | GO:0009854: oxidative photosynthetic carbon pathway | 3.05E-05 |
| 13 | GO:0006810: transport | 8.84E-05 |
| 14 | GO:0031998: regulation of fatty acid beta-oxidation | 9.69E-05 |
| 15 | GO:0010362: negative regulation of anion channel activity by blue light | 9.69E-05 |
| 16 | GO:1902265: abscisic acid homeostasis | 9.69E-05 |
| 17 | GO:0051775: response to redox state | 9.69E-05 |
| 18 | GO:0006659: phosphatidylserine biosynthetic process | 9.69E-05 |
| 19 | GO:0080093: regulation of photorespiration | 9.69E-05 |
| 20 | GO:0009637: response to blue light | 1.50E-04 |
| 21 | GO:0006094: gluconeogenesis | 1.93E-04 |
| 22 | GO:0006108: malate metabolic process | 1.93E-04 |
| 23 | GO:0019253: reductive pentose-phosphate cycle | 2.19E-04 |
| 24 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.28E-04 |
| 25 | GO:0097054: L-glutamate biosynthetic process | 2.28E-04 |
| 26 | GO:0005977: glycogen metabolic process | 3.80E-04 |
| 27 | GO:0006011: UDP-glucose metabolic process | 3.80E-04 |
| 28 | GO:0000913: preprophase band assembly | 3.80E-04 |
| 29 | GO:0006000: fructose metabolic process | 3.80E-04 |
| 30 | GO:0046686: response to cadmium ion | 5.20E-04 |
| 31 | GO:0006166: purine ribonucleoside salvage | 5.46E-04 |
| 32 | GO:0006107: oxaloacetate metabolic process | 5.46E-04 |
| 33 | GO:0042823: pyridoxal phosphate biosynthetic process | 5.46E-04 |
| 34 | GO:0006537: glutamate biosynthetic process | 5.46E-04 |
| 35 | GO:0006168: adenine salvage | 5.46E-04 |
| 36 | GO:0032877: positive regulation of DNA endoreduplication | 5.46E-04 |
| 37 | GO:0009791: post-embryonic development | 6.99E-04 |
| 38 | GO:0019676: ammonia assimilation cycle | 7.26E-04 |
| 39 | GO:0048442: sepal development | 7.26E-04 |
| 40 | GO:0006021: inositol biosynthetic process | 7.26E-04 |
| 41 | GO:0006734: NADH metabolic process | 7.26E-04 |
| 42 | GO:0006097: glyoxylate cycle | 9.17E-04 |
| 43 | GO:0009229: thiamine diphosphate biosynthetic process | 9.17E-04 |
| 44 | GO:0016123: xanthophyll biosynthetic process | 9.17E-04 |
| 45 | GO:0044209: AMP salvage | 9.17E-04 |
| 46 | GO:0006544: glycine metabolic process | 9.17E-04 |
| 47 | GO:0043097: pyrimidine nucleoside salvage | 9.17E-04 |
| 48 | GO:0009904: chloroplast accumulation movement | 9.17E-04 |
| 49 | GO:0055114: oxidation-reduction process | 9.34E-04 |
| 50 | GO:0042742: defense response to bacterium | 9.89E-04 |
| 51 | GO:0007623: circadian rhythm | 9.96E-04 |
| 52 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 1.12E-03 |
| 53 | GO:0006206: pyrimidine nucleobase metabolic process | 1.12E-03 |
| 54 | GO:0009228: thiamine biosynthetic process | 1.12E-03 |
| 55 | GO:0050665: hydrogen peroxide biosynthetic process | 1.12E-03 |
| 56 | GO:0010942: positive regulation of cell death | 1.12E-03 |
| 57 | GO:0006563: L-serine metabolic process | 1.12E-03 |
| 58 | GO:0009735: response to cytokinin | 1.31E-03 |
| 59 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 1.34E-03 |
| 60 | GO:0042026: protein refolding | 1.34E-03 |
| 61 | GO:0010076: maintenance of floral meristem identity | 1.34E-03 |
| 62 | GO:0006458: 'de novo' protein folding | 1.34E-03 |
| 63 | GO:0017148: negative regulation of translation | 1.34E-03 |
| 64 | GO:0009658: chloroplast organization | 1.71E-03 |
| 65 | GO:0006099: tricarboxylic acid cycle | 1.80E-03 |
| 66 | GO:0052543: callose deposition in cell wall | 1.81E-03 |
| 67 | GO:0016559: peroxisome fission | 1.81E-03 |
| 68 | GO:0048564: photosystem I assembly | 1.81E-03 |
| 69 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 1.81E-03 |
| 70 | GO:0009704: de-etiolation | 1.81E-03 |
| 71 | GO:0006002: fructose 6-phosphate metabolic process | 2.07E-03 |
| 72 | GO:0071482: cellular response to light stimulus | 2.07E-03 |
| 73 | GO:0009657: plastid organization | 2.07E-03 |
| 74 | GO:0006098: pentose-phosphate shunt | 2.33E-03 |
| 75 | GO:0009056: catabolic process | 2.33E-03 |
| 76 | GO:0009638: phototropism | 2.61E-03 |
| 77 | GO:0035999: tetrahydrofolate interconversion | 2.61E-03 |
| 78 | GO:0048441: petal development | 2.90E-03 |
| 79 | GO:0009773: photosynthetic electron transport in photosystem I | 3.20E-03 |
| 80 | GO:0006415: translational termination | 3.20E-03 |
| 81 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.20E-03 |
| 82 | GO:0009767: photosynthetic electron transport chain | 3.82E-03 |
| 83 | GO:0005986: sucrose biosynthetic process | 3.82E-03 |
| 84 | GO:0030048: actin filament-based movement | 3.82E-03 |
| 85 | GO:0048440: carpel development | 4.15E-03 |
| 86 | GO:0007031: peroxisome organization | 4.49E-03 |
| 87 | GO:0042343: indole glucosinolate metabolic process | 4.49E-03 |
| 88 | GO:0098542: defense response to other organism | 5.93E-03 |
| 89 | GO:0061077: chaperone-mediated protein folding | 5.93E-03 |
| 90 | GO:0006730: one-carbon metabolic process | 6.31E-03 |
| 91 | GO:0016226: iron-sulfur cluster assembly | 6.31E-03 |
| 92 | GO:0080092: regulation of pollen tube growth | 6.31E-03 |
| 93 | GO:0048443: stamen development | 7.10E-03 |
| 94 | GO:0016117: carotenoid biosynthetic process | 7.51E-03 |
| 95 | GO:0009416: response to light stimulus | 7.61E-03 |
| 96 | GO:0010118: stomatal movement | 7.93E-03 |
| 97 | GO:0042631: cellular response to water deprivation | 7.93E-03 |
| 98 | GO:0005975: carbohydrate metabolic process | 8.24E-03 |
| 99 | GO:0006520: cellular amino acid metabolic process | 8.35E-03 |
| 100 | GO:0006814: sodium ion transport | 8.79E-03 |
| 101 | GO:0007059: chromosome segregation | 8.79E-03 |
| 102 | GO:0015986: ATP synthesis coupled proton transport | 8.79E-03 |
| 103 | GO:0007018: microtubule-based movement | 8.79E-03 |
| 104 | GO:0019252: starch biosynthetic process | 9.23E-03 |
| 105 | GO:0008654: phospholipid biosynthetic process | 9.23E-03 |
| 106 | GO:0007264: small GTPase mediated signal transduction | 1.01E-02 |
| 107 | GO:0016032: viral process | 1.01E-02 |
| 108 | GO:0051607: defense response to virus | 1.20E-02 |
| 109 | GO:0000910: cytokinesis | 1.20E-02 |
| 110 | GO:0007049: cell cycle | 1.25E-02 |
| 111 | GO:0010029: regulation of seed germination | 1.30E-02 |
| 112 | GO:0046777: protein autophosphorylation | 1.49E-02 |
| 113 | GO:0009817: defense response to fungus, incompatible interaction | 1.51E-02 |
| 114 | GO:0048481: plant ovule development | 1.51E-02 |
| 115 | GO:0018298: protein-chromophore linkage | 1.51E-02 |
| 116 | GO:0000160: phosphorelay signal transduction system | 1.57E-02 |
| 117 | GO:0016051: carbohydrate biosynthetic process | 1.79E-02 |
| 118 | GO:0009744: response to sucrose | 2.14E-02 |
| 119 | GO:0000165: MAPK cascade | 2.46E-02 |
| 120 | GO:0009585: red, far-red light phototransduction | 2.65E-02 |
| 121 | GO:0006417: regulation of translation | 2.85E-02 |
| 122 | GO:0006096: glycolytic process | 2.99E-02 |
| 123 | GO:0048316: seed development | 3.05E-02 |
| 124 | GO:0009626: plant-type hypersensitive response | 3.12E-02 |
| 125 | GO:0006396: RNA processing | 3.48E-02 |
| 126 | GO:0051726: regulation of cell cycle | 3.55E-02 |
| 127 | GO:0009742: brassinosteroid mediated signaling pathway | 3.55E-02 |
| 128 | GO:0051301: cell division | 3.98E-02 |
| 129 | GO:0009058: biosynthetic process | 4.15E-02 |
| 130 | GO:0009845: seed germination | 4.23E-02 |
| 131 | GO:0006633: fatty acid biosynthetic process | 4.70E-02 |
| 132 | GO:0006457: protein folding | 4.71E-02 |
| 133 | GO:0040008: regulation of growth | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 2 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 3 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 4 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 5 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 6 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 7 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 8 | GO:0008465: glycerate dehydrogenase activity | 0.00E+00 |
| 9 | GO:0004417: hydroxyethylthiazole kinase activity | 0.00E+00 |
| 10 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 8.00E-09 |
| 11 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 8.50E-06 |
| 12 | GO:0016615: malate dehydrogenase activity | 2.15E-05 |
| 13 | GO:0030060: L-malate dehydrogenase activity | 3.05E-05 |
| 14 | GO:0048038: quinone binding | 4.03E-05 |
| 15 | GO:0010313: phytochrome binding | 9.69E-05 |
| 16 | GO:0008746: NAD(P)+ transhydrogenase activity | 9.69E-05 |
| 17 | GO:0016041: glutamate synthase (ferredoxin) activity | 9.69E-05 |
| 18 | GO:0008266: poly(U) RNA binding | 2.19E-04 |
| 19 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.28E-04 |
| 20 | GO:0004512: inositol-3-phosphate synthase activity | 2.28E-04 |
| 21 | GO:0010291: carotene beta-ring hydroxylase activity | 2.28E-04 |
| 22 | GO:0032947: protein complex scaffold | 3.80E-04 |
| 23 | GO:0004148: dihydrolipoyl dehydrogenase activity | 3.80E-04 |
| 24 | GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity | 3.80E-04 |
| 25 | GO:0008508: bile acid:sodium symporter activity | 5.46E-04 |
| 26 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 5.46E-04 |
| 27 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 5.46E-04 |
| 28 | GO:0048027: mRNA 5'-UTR binding | 5.46E-04 |
| 29 | GO:0003999: adenine phosphoribosyltransferase activity | 5.46E-04 |
| 30 | GO:0016149: translation release factor activity, codon specific | 5.46E-04 |
| 31 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 5.46E-04 |
| 32 | GO:0009882: blue light photoreceptor activity | 5.46E-04 |
| 33 | GO:0010181: FMN binding | 6.54E-04 |
| 34 | GO:0008453: alanine-glyoxylate transaminase activity | 7.26E-04 |
| 35 | GO:0008891: glycolate oxidase activity | 7.26E-04 |
| 36 | GO:0004372: glycine hydroxymethyltransferase activity | 9.17E-04 |
| 37 | GO:0051538: 3 iron, 4 sulfur cluster binding | 9.17E-04 |
| 38 | GO:0004332: fructose-bisphosphate aldolase activity | 1.12E-03 |
| 39 | GO:0042578: phosphoric ester hydrolase activity | 1.12E-03 |
| 40 | GO:0000210: NAD+ diphosphatase activity | 1.12E-03 |
| 41 | GO:0042802: identical protein binding | 1.34E-03 |
| 42 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.34E-03 |
| 43 | GO:0004849: uridine kinase activity | 1.34E-03 |
| 44 | GO:0004033: aldo-keto reductase (NADP) activity | 1.81E-03 |
| 45 | GO:0008135: translation factor activity, RNA binding | 2.07E-03 |
| 46 | GO:0015078: hydrogen ion transmembrane transporter activity | 2.07E-03 |
| 47 | GO:0003747: translation release factor activity | 2.33E-03 |
| 48 | GO:0044183: protein binding involved in protein folding | 3.20E-03 |
| 49 | GO:0004860: protein kinase inhibitor activity | 3.20E-03 |
| 50 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 3.20E-03 |
| 51 | GO:0016787: hydrolase activity | 3.75E-03 |
| 52 | GO:0004089: carbonate dehydratase activity | 3.82E-03 |
| 53 | GO:0031072: heat shock protein binding | 3.82E-03 |
| 54 | GO:0000155: phosphorelay sensor kinase activity | 3.82E-03 |
| 55 | GO:0051082: unfolded protein binding | 4.20E-03 |
| 56 | GO:0051536: iron-sulfur cluster binding | 5.19E-03 |
| 57 | GO:0016491: oxidoreductase activity | 6.64E-03 |
| 58 | GO:0003756: protein disulfide isomerase activity | 7.10E-03 |
| 59 | GO:0004672: protein kinase activity | 7.84E-03 |
| 60 | GO:0019901: protein kinase binding | 9.23E-03 |
| 61 | GO:0005524: ATP binding | 9.33E-03 |
| 62 | GO:0004518: nuclease activity | 1.01E-02 |
| 63 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 1.62E-02 |
| 64 | GO:0050897: cobalt ion binding | 1.68E-02 |
| 65 | GO:0003746: translation elongation factor activity | 1.79E-02 |
| 66 | GO:0005506: iron ion binding | 1.83E-02 |
| 67 | GO:0003824: catalytic activity | 2.10E-02 |
| 68 | GO:0005515: protein binding | 2.26E-02 |
| 69 | GO:0005198: structural molecule activity | 2.33E-02 |
| 70 | GO:0051287: NAD binding | 2.46E-02 |
| 71 | GO:0003777: microtubule motor activity | 2.85E-02 |
| 72 | GO:0022857: transmembrane transporter activity | 3.26E-02 |
| 73 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.07E-02 |
| 74 | GO:0030170: pyridoxal phosphate binding | 4.30E-02 |
| 75 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 4.38E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042579: microbody | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 4.37E-21 |
| 3 | GO:0009941: chloroplast envelope | 9.86E-15 |
| 4 | GO:0009570: chloroplast stroma | 2.85E-10 |
| 5 | GO:0048046: apoplast | 6.83E-10 |
| 6 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 6.02E-09 |
| 7 | GO:0005960: glycine cleavage complex | 8.00E-09 |
| 8 | GO:0009534: chloroplast thylakoid | 4.47E-07 |
| 9 | GO:0009535: chloroplast thylakoid membrane | 4.90E-05 |
| 10 | GO:0009579: thylakoid | 5.81E-05 |
| 11 | GO:0009344: nitrite reductase complex [NAD(P)H] | 9.69E-05 |
| 12 | GO:0005777: peroxisome | 3.62E-04 |
| 13 | GO:0005759: mitochondrial matrix | 8.88E-04 |
| 14 | GO:0010319: stromule | 9.50E-04 |
| 15 | GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o) | 1.12E-03 |
| 16 | GO:0005819: spindle | 1.88E-03 |
| 17 | GO:0005779: integral component of peroxisomal membrane | 2.07E-03 |
| 18 | GO:0016324: apical plasma membrane | 2.90E-03 |
| 19 | GO:0005765: lysosomal membrane | 3.20E-03 |
| 20 | GO:0019013: viral nucleocapsid | 3.82E-03 |
| 21 | GO:0009508: plastid chromosome | 3.82E-03 |
| 22 | GO:0030095: chloroplast photosystem II | 4.15E-03 |
| 23 | GO:0010287: plastoglobule | 4.98E-03 |
| 24 | GO:0005623: cell | 5.39E-03 |
| 25 | GO:0009654: photosystem II oxygen evolving complex | 5.55E-03 |
| 26 | GO:0005829: cytosol | 6.94E-03 |
| 27 | GO:0005871: kinesin complex | 7.51E-03 |
| 28 | GO:0019898: extrinsic component of membrane | 9.23E-03 |
| 29 | GO:0009504: cell plate | 9.23E-03 |
| 30 | GO:0005694: chromosome | 1.01E-02 |
| 31 | GO:0009295: nucleoid | 1.16E-02 |
| 32 | GO:0005778: peroxisomal membrane | 1.16E-02 |
| 33 | GO:0031902: late endosome membrane | 2.02E-02 |
| 34 | GO:0031977: thylakoid lumen | 2.02E-02 |
| 35 | GO:0005747: mitochondrial respiratory chain complex I | 3.05E-02 |
| 36 | GO:0005834: heterotrimeric G-protein complex | 3.12E-02 |
| 37 | GO:0022626: cytosolic ribosome | 3.50E-02 |
| 38 | GO:0005886: plasma membrane | 3.58E-02 |
| 39 | GO:0009543: chloroplast thylakoid lumen | 4.00E-02 |
| 40 | GO:0009524: phragmoplast | 4.15E-02 |