Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G04840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006412: translation3.95E-113
2GO:0042254: ribosome biogenesis1.96E-41
3GO:0000027: ribosomal large subunit assembly2.35E-14
4GO:0000028: ribosomal small subunit assembly3.82E-07
5GO:0009967: positive regulation of signal transduction4.16E-07
6GO:0009735: response to cytokinin1.54E-06
7GO:0009955: adaxial/abaxial pattern specification2.61E-05
8GO:0009409: response to cold4.86E-05
9GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)8.78E-05
10GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)8.78E-05
11GO:0006407: rRNA export from nucleus8.78E-05
12GO:0048569: post-embryonic animal organ development2.08E-04
13GO:0009965: leaf morphogenesis2.10E-04
14GO:0042256: mature ribosome assembly3.48E-04
15GO:0090506: axillary shoot meristem initiation3.48E-04
16GO:1902626: assembly of large subunit precursor of preribosome3.48E-04
17GO:0071215: cellular response to abscisic acid stimulus3.93E-04
18GO:0044205: 'de novo' UMP biosynthetic process6.66E-04
19GO:2000032: regulation of secondary shoot formation6.66E-04
20GO:0042274: ribosomal small subunit biogenesis6.66E-04
21GO:0000470: maturation of LSU-rRNA1.03E-03
22GO:0000911: cytokinesis by cell plate formation1.23E-03
23GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process1.44E-03
24GO:0006526: arginine biosynthetic process1.89E-03
25GO:0006002: fructose 6-phosphate metabolic process1.89E-03
26GO:0008283: cell proliferation1.94E-03
27GO:0009644: response to high light intensity2.10E-03
28GO:0010015: root morphogenesis2.93E-03
29GO:0006913: nucleocytoplasmic transport2.93E-03
30GO:0048367: shoot system development3.17E-03
31GO:0010229: inflorescence development3.50E-03
32GO:0010102: lateral root morphogenesis3.50E-03
33GO:0006541: glutamine metabolic process3.80E-03
34GO:0009845: seed germination4.99E-03
35GO:0015992: proton transport5.42E-03
36GO:0040007: growth6.12E-03
37GO:0009791: post-embryonic development8.42E-03
38GO:0010090: trichome morphogenesis9.67E-03
39GO:0010252: auxin homeostasis1.01E-02
40GO:0006414: translational elongation1.07E-02
41GO:0010043: response to zinc ion1.53E-02
42GO:0048364: root development1.89E-02
43GO:0009651: response to salt stress2.22E-02
44GO:0006364: rRNA processing2.41E-02
45GO:0006417: regulation of translation2.60E-02
46GO:0006096: glycolytic process2.72E-02
47GO:0046686: response to cadmium ion2.75E-02
48GO:0009620: response to fungus2.91E-02
49GO:0006413: translational initiation4.35E-02
50GO:0016036: cellular response to phosphate starvation4.35E-02
51GO:0009793: embryo development ending in seed dormancy4.48E-02
RankGO TermAdjusted P value
1GO:0003735: structural constituent of ribosome3.37E-134
2GO:0003729: mRNA binding4.82E-29
3GO:0019843: rRNA binding4.77E-11
4GO:0005078: MAP-kinase scaffold activity4.16E-07
5GO:0008097: 5S rRNA binding3.77E-06
6GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity8.78E-05
7GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity3.48E-04
8GO:0070181: small ribosomal subunit rRNA binding3.48E-04
9GO:0003872: 6-phosphofructokinase activity1.44E-03
10GO:0004871: signal transducer activity1.53E-02
11GO:0000166: nucleotide binding3.21E-02
RankGO TermAdjusted P value
1GO:0022626: cytosolic ribosome1.17E-105
2GO:0022625: cytosolic large ribosomal subunit1.68E-79
3GO:0005840: ribosome2.80E-74
4GO:0022627: cytosolic small ribosomal subunit3.50E-49
5GO:0005737: cytoplasm4.16E-31
6GO:0005829: cytosol5.27E-30
7GO:0005730: nucleolus5.50E-30
8GO:0009506: plasmodesma1.43E-21
9GO:0015934: large ribosomal subunit1.68E-19
10GO:0016020: membrane3.57E-19
11GO:0005618: cell wall1.77E-13
12GO:0005774: vacuolar membrane9.92E-13
13GO:0015935: small ribosomal subunit1.27E-09
14GO:0005773: vacuole2.93E-07
15GO:0005886: plasma membrane6.50E-06
16GO:0009507: chloroplast3.26E-05
17GO:0005951: carbamoyl-phosphate synthase complex8.78E-05
18GO:0030686: 90S preribosome8.78E-05
19GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex8.78E-05
20GO:0005622: intracellular2.94E-03
21GO:0005834: heterotrimeric G-protein complex2.84E-02
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Gene type



Gene DE type