GO Enrichment Analysis of Co-expressed Genes with
AT3G04400
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044794: positive regulation by host of viral process | 0.00E+00 |
| 2 | GO:0034050: host programmed cell death induced by symbiont | 0.00E+00 |
| 3 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:0006412: translation | 1.15E-33 |
| 6 | GO:0042254: ribosome biogenesis | 2.72E-21 |
| 7 | GO:0000027: ribosomal large subunit assembly | 2.62E-08 |
| 8 | GO:0045041: protein import into mitochondrial intermembrane space | 2.06E-07 |
| 9 | GO:0002181: cytoplasmic translation | 7.95E-07 |
| 10 | GO:0007005: mitochondrion organization | 4.90E-06 |
| 11 | GO:0006458: 'de novo' protein folding | 1.38E-05 |
| 12 | GO:0042026: protein refolding | 1.38E-05 |
| 13 | GO:0031120: snRNA pseudouridine synthesis | 5.94E-05 |
| 14 | GO:0031118: rRNA pseudouridine synthesis | 5.94E-05 |
| 15 | GO:0000494: box C/D snoRNA 3'-end processing | 5.94E-05 |
| 16 | GO:1990258: histone glutamine methylation | 5.94E-05 |
| 17 | GO:0006626: protein targeting to mitochondrion | 9.56E-05 |
| 18 | GO:0045905: positive regulation of translational termination | 1.44E-04 |
| 19 | GO:0045901: positive regulation of translational elongation | 1.44E-04 |
| 20 | GO:0006123: mitochondrial electron transport, cytochrome c to oxygen | 1.44E-04 |
| 21 | GO:0006452: translational frameshifting | 1.44E-04 |
| 22 | GO:0061077: chaperone-mediated protein folding | 1.94E-04 |
| 23 | GO:0006954: inflammatory response | 2.46E-04 |
| 24 | GO:1902626: assembly of large subunit precursor of preribosome | 2.46E-04 |
| 25 | GO:0090506: axillary shoot meristem initiation | 2.46E-04 |
| 26 | GO:0008652: cellular amino acid biosynthetic process | 2.46E-04 |
| 27 | GO:0007004: telomere maintenance via telomerase | 3.57E-04 |
| 28 | GO:0070301: cellular response to hydrogen peroxide | 3.57E-04 |
| 29 | GO:0006241: CTP biosynthetic process | 3.57E-04 |
| 30 | GO:0006165: nucleoside diphosphate phosphorylation | 3.57E-04 |
| 31 | GO:0006228: UTP biosynthetic process | 3.57E-04 |
| 32 | GO:0051131: chaperone-mediated protein complex assembly | 3.57E-04 |
| 33 | GO:0006413: translational initiation | 4.05E-04 |
| 34 | GO:2000032: regulation of secondary shoot formation | 4.78E-04 |
| 35 | GO:0006183: GTP biosynthetic process | 4.78E-04 |
| 36 | GO:0071493: cellular response to UV-B | 6.05E-04 |
| 37 | GO:0031167: rRNA methylation | 6.05E-04 |
| 38 | GO:0046686: response to cadmium ion | 6.79E-04 |
| 39 | GO:0016444: somatic cell DNA recombination | 8.82E-04 |
| 40 | GO:0009955: adaxial/abaxial pattern specification | 8.82E-04 |
| 41 | GO:0009423: chorismate biosynthetic process | 8.82E-04 |
| 42 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 1.03E-03 |
| 43 | GO:0009396: folic acid-containing compound biosynthetic process | 1.03E-03 |
| 44 | GO:0001522: pseudouridine synthesis | 1.18E-03 |
| 45 | GO:0008283: cell proliferation | 1.18E-03 |
| 46 | GO:0006605: protein targeting | 1.18E-03 |
| 47 | GO:0000028: ribosomal small subunit assembly | 1.18E-03 |
| 48 | GO:0001510: RNA methylation | 1.35E-03 |
| 49 | GO:0006189: 'de novo' IMP biosynthetic process | 1.52E-03 |
| 50 | GO:0098656: anion transmembrane transport | 1.52E-03 |
| 51 | GO:0000387: spliceosomal snRNP assembly | 1.69E-03 |
| 52 | GO:0035999: tetrahydrofolate interconversion | 1.69E-03 |
| 53 | GO:0009073: aromatic amino acid family biosynthetic process | 2.07E-03 |
| 54 | GO:0012501: programmed cell death | 2.27E-03 |
| 55 | GO:0006820: anion transport | 2.27E-03 |
| 56 | GO:0015031: protein transport | 2.33E-03 |
| 57 | GO:0010102: lateral root morphogenesis | 2.47E-03 |
| 58 | GO:0048467: gynoecium development | 2.68E-03 |
| 59 | GO:0006334: nucleosome assembly | 3.81E-03 |
| 60 | GO:0009294: DNA mediated transformation | 4.30E-03 |
| 61 | GO:0009617: response to bacterium | 4.53E-03 |
| 62 | GO:0008033: tRNA processing | 5.07E-03 |
| 63 | GO:0000413: protein peptidyl-prolyl isomerization | 5.07E-03 |
| 64 | GO:0010197: polar nucleus fusion | 5.34E-03 |
| 65 | GO:0016032: viral process | 6.46E-03 |
| 66 | GO:0032502: developmental process | 6.46E-03 |
| 67 | GO:0010252: auxin homeostasis | 7.05E-03 |
| 68 | GO:0006888: ER to Golgi vesicle-mediated transport | 8.92E-03 |
| 69 | GO:0016049: cell growth | 9.25E-03 |
| 70 | GO:0009651: response to salt stress | 1.01E-02 |
| 71 | GO:0048527: lateral root development | 1.06E-02 |
| 72 | GO:0000724: double-strand break repair via homologous recombination | 1.10E-02 |
| 73 | GO:0048364: root development | 1.12E-02 |
| 74 | GO:0009853: photorespiration | 1.13E-02 |
| 75 | GO:0009744: response to sucrose | 1.35E-02 |
| 76 | GO:0009965: leaf morphogenesis | 1.47E-02 |
| 77 | GO:0009846: pollen germination | 1.59E-02 |
| 78 | GO:0006364: rRNA processing | 1.67E-02 |
| 79 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.71E-02 |
| 80 | GO:0009735: response to cytokinin | 1.75E-02 |
| 81 | GO:0048367: shoot system development | 1.93E-02 |
| 82 | GO:0009793: embryo development ending in seed dormancy | 2.36E-02 |
| 83 | GO:0000398: mRNA splicing, via spliceosome | 2.38E-02 |
| 84 | GO:0006457: protein folding | 2.48E-02 |
| 85 | GO:0009790: embryo development | 2.81E-02 |
| 86 | GO:0006633: fatty acid biosynthetic process | 2.97E-02 |
| 87 | GO:0042742: defense response to bacterium | 3.86E-02 |
| 88 | GO:0009860: pollen tube growth | 4.56E-02 |
| 89 | GO:0009723: response to ethylene | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102132: 3-oxo-pimeloyl-[acp] methyl ester reductase activity | 0.00E+00 |
| 2 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 3 | GO:0004107: chorismate synthase activity | 0.00E+00 |
| 4 | GO:0004316: 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity | 0.00E+00 |
| 5 | GO:0003735: structural constituent of ribosome | 1.07E-39 |
| 6 | GO:0003729: mRNA binding | 1.94E-14 |
| 7 | GO:0019843: rRNA binding | 1.83E-05 |
| 8 | GO:0030515: snoRNA binding | 1.90E-05 |
| 9 | GO:0003746: translation elongation factor activity | 5.79E-05 |
| 10 | GO:1990259: histone-glutamine methyltransferase activity | 5.94E-05 |
| 11 | GO:0004638: phosphoribosylaminoimidazole carboxylase activity | 5.94E-05 |
| 12 | GO:0044183: protein binding involved in protein folding | 7.05E-05 |
| 13 | GO:0070034: telomerase RNA binding | 1.44E-04 |
| 14 | GO:0008649: rRNA methyltransferase activity | 2.46E-04 |
| 15 | GO:0004550: nucleoside diphosphate kinase activity | 3.57E-04 |
| 16 | GO:0008097: 5S rRNA binding | 3.57E-04 |
| 17 | GO:0019201: nucleotide kinase activity | 3.57E-04 |
| 18 | GO:0003743: translation initiation factor activity | 5.40E-04 |
| 19 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 7.40E-04 |
| 20 | GO:0031369: translation initiation factor binding | 7.40E-04 |
| 21 | GO:0004017: adenylate kinase activity | 8.82E-04 |
| 22 | GO:0005507: copper ion binding | 9.57E-04 |
| 23 | GO:0008143: poly(A) binding | 1.03E-03 |
| 24 | GO:0043022: ribosome binding | 1.18E-03 |
| 25 | GO:0015288: porin activity | 1.18E-03 |
| 26 | GO:0008312: 7S RNA binding | 1.18E-03 |
| 27 | GO:0008308: voltage-gated anion channel activity | 1.35E-03 |
| 28 | GO:0051082: unfolded protein binding | 2.22E-03 |
| 29 | GO:0003723: RNA binding | 3.37E-03 |
| 30 | GO:0004298: threonine-type endopeptidase activity | 3.81E-03 |
| 31 | GO:0010181: FMN binding | 5.61E-03 |
| 32 | GO:0003924: GTPase activity | 1.07E-02 |
| 33 | GO:0042393: histone binding | 1.24E-02 |
| 34 | GO:0005515: protein binding | 1.35E-02 |
| 35 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.51E-02 |
| 36 | GO:0051287: NAD binding | 1.55E-02 |
| 37 | GO:0042802: identical protein binding | 3.76E-02 |
| 38 | GO:0008233: peptidase activity | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043186: P granule | 0.00E+00 |
| 2 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 3 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 4 | GO:0022625: cytosolic large ribosomal subunit | 1.55E-45 |
| 5 | GO:0005840: ribosome | 1.23E-28 |
| 6 | GO:0022626: cytosolic ribosome | 1.43E-28 |
| 7 | GO:0005730: nucleolus | 1.95E-18 |
| 8 | GO:0005829: cytosol | 6.83E-16 |
| 9 | GO:0005773: vacuole | 1.00E-15 |
| 10 | GO:0005737: cytoplasm | 1.82E-14 |
| 11 | GO:0005774: vacuolar membrane | 9.17E-11 |
| 12 | GO:0015934: large ribosomal subunit | 2.82E-10 |
| 13 | GO:0009506: plasmodesma | 2.79E-09 |
| 14 | GO:0005758: mitochondrial intermembrane space | 2.94E-06 |
| 15 | GO:0015030: Cajal body | 4.94E-05 |
| 16 | GO:0022627: cytosolic small ribosomal subunit | 5.93E-05 |
| 17 | GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m | 5.94E-05 |
| 18 | GO:0005852: eukaryotic translation initiation factor 3 complex | 7.05E-05 |
| 19 | GO:0009507: chloroplast | 9.68E-05 |
| 20 | GO:0005747: mitochondrial respiratory chain complex I | 1.74E-04 |
| 21 | GO:0016020: membrane | 2.08E-04 |
| 22 | GO:0005886: plasma membrane | 2.29E-04 |
| 23 | GO:0034719: SMN-Sm protein complex | 2.46E-04 |
| 24 | GO:0005853: eukaryotic translation elongation factor 1 complex | 2.46E-04 |
| 25 | GO:0031429: box H/ACA snoRNP complex | 3.57E-04 |
| 26 | GO:0005682: U5 snRNP | 4.78E-04 |
| 27 | GO:0005687: U4 snRNP | 6.05E-04 |
| 28 | GO:0097526: spliceosomal tri-snRNP complex | 6.05E-04 |
| 29 | GO:0031428: box C/D snoRNP complex | 7.40E-04 |
| 30 | GO:0005689: U12-type spliceosomal complex | 8.82E-04 |
| 31 | GO:0071004: U2-type prespliceosome | 1.18E-03 |
| 32 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 1.35E-03 |
| 33 | GO:0046930: pore complex | 1.35E-03 |
| 34 | GO:0005685: U1 snRNP | 1.52E-03 |
| 35 | GO:0071011: precatalytic spliceosome | 1.69E-03 |
| 36 | GO:0005686: U2 snRNP | 1.88E-03 |
| 37 | GO:0071013: catalytic step 2 spliceosome | 2.07E-03 |
| 38 | GO:0048471: perinuclear region of cytoplasm | 2.07E-03 |
| 39 | GO:0009536: plastid | 2.21E-03 |
| 40 | GO:0032040: small-subunit processome | 2.27E-03 |
| 41 | GO:0019013: viral nucleocapsid | 2.47E-03 |
| 42 | GO:0070469: respiratory chain | 3.57E-03 |
| 43 | GO:0005741: mitochondrial outer membrane | 3.81E-03 |
| 44 | GO:0005839: proteasome core complex | 3.81E-03 |
| 45 | GO:0005788: endoplasmic reticulum lumen | 8.28E-03 |
| 46 | GO:0009570: chloroplast stroma | 8.34E-03 |
| 47 | GO:0005743: mitochondrial inner membrane | 9.98E-03 |
| 48 | GO:0005618: cell wall | 1.30E-02 |
| 49 | GO:0000502: proteasome complex | 1.67E-02 |
| 50 | GO:0009941: chloroplast envelope | 1.69E-02 |
| 51 | GO:0005681: spliceosomal complex | 1.88E-02 |
| 52 | GO:0005732: small nucleolar ribonucleoprotein complex | 2.29E-02 |
| 53 | GO:0005759: mitochondrial matrix | 2.97E-02 |
| 54 | GO:0048046: apoplast | 4.13E-02 |
| 55 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.62E-02 |