co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G03840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
4	GO:0046620: regulation of organ growth	3.83E-10
5	GO:0009926: auxin polar transport	2.28E-06
6	GO:0009733: response to auxin	4.20E-05
7	GO:2000021: regulation of ion homeostasis	5.48E-05
8	GO:0046520: sphingoid biosynthetic process	5.48E-05
9	GO:0043266: regulation of potassium ion transport	5.48E-05
10	GO:0006833: water transport	1.25E-04
11	GO:0031648: protein destabilization	1.34E-04
12	GO:0015840: urea transport	2.28E-04
13	GO:0015714: phosphoenolpyruvate transport	2.28E-04
14	GO:0033014: tetrapyrrole biosynthetic process	3.33E-04
15	GO:0046739: transport of virus in multicellular host	3.33E-04
16	GO:0022622: root system development	4.45E-04
17	GO:0015713: phosphoglycerate transport	4.45E-04
18	GO:0015995: chlorophyll biosynthetic process	6.07E-04
19	GO:0080086: stamen filament development	8.25E-04
20	GO:0032880: regulation of protein localization	9.62E-04
21	GO:0009610: response to symbiotic fungus	9.62E-04
22	GO:1900057: positive regulation of leaf senescence	9.62E-04
23	GO:0010497: plasmodesmata-mediated intercellular transport	1.26E-03
24	GO:0042538: hyperosmotic salinity response	1.32E-03
25	GO:0051865: protein autoubiquitination	1.41E-03
26	GO:0006783: heme biosynthetic process	1.41E-03
27	GO:0048589: developmental growth	1.41E-03
28	GO:0006949: syncytium formation	1.75E-03
29	GO:0010215: cellulose microfibril organization	1.75E-03
30	GO:0018119: peptidyl-cysteine S-nitrosylation	1.93E-03
31	GO:0016024: CDP-diacylglycerol biosynthetic process	2.11E-03
32	GO:0010152: pollen maturation	2.11E-03
33	GO:0009734: auxin-activated signaling pathway	2.18E-03
34	GO:0009767: photosynthetic electron transport chain	2.30E-03
35	GO:0010588: cotyledon vascular tissue pattern formation	2.30E-03
36	GO:2000012: regulation of auxin polar transport	2.30E-03
37	GO:0010143: cutin biosynthetic process	2.49E-03
38	GO:0009825: multidimensional cell growth	2.70E-03
39	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.77E-03
40	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.00E-03
41	GO:0048443: stamen development	4.23E-03
42	GO:0008284: positive regulation of cell proliferation	4.47E-03
43	GO:0010087: phloem or xylem histogenesis	4.71E-03
44	GO:0080022: primary root development	4.71E-03
45	GO:0034220: ion transmembrane transport	4.71E-03
46	GO:0010305: leaf vascular tissue pattern formation	4.96E-03
47	GO:0009958: positive gravitropism	4.96E-03
48	GO:0042254: ribosome biogenesis	5.38E-03
49	GO:0009791: post-embryonic development	5.48E-03
50	GO:0009828: plant-type cell wall loosening	6.55E-03
51	GO:0016311: dephosphorylation	8.60E-03
52	GO:0016042: lipid catabolic process	9.38E-03
53	GO:0048527: lateral root development	9.86E-03
54	GO:0030001: metal ion transport	1.15E-02
55	GO:0006810: transport	1.16E-02
56	GO:0006631: fatty acid metabolic process	1.19E-02
57	GO:0010114: response to red light	1.26E-02
58	GO:0009640: photomorphogenesis	1.26E-02
59	GO:0008643: carbohydrate transport	1.33E-02
60	GO:0009664: plant-type cell wall organization	1.48E-02
61	GO:0048367: shoot system development	1.79E-02
62	GO:0055085: transmembrane transport	2.18E-02
63	GO:0042744: hydrogen peroxide catabolic process	2.57E-02
64	GO:0016567: protein ubiquitination	2.91E-02
65	GO:0045490: pectin catabolic process	2.94E-02
66	GO:0009739: response to gibberellin	3.19E-02
67	GO:0010468: regulation of gene expression	3.34E-02
68	GO:0009414: response to water deprivation	3.40E-02
69	GO:0071555: cell wall organization	3.48E-02
70	GO:0009826: unidimensional cell growth	3.91E-02
71	GO:0080167: response to karrikin	4.68E-02
72	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.79E-02
73	GO:0046777: protein autophosphorylation	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
3	GO:0000170: sphingosine hydroxylase activity	5.48E-05
4	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	5.48E-05
5	GO:0015200: methylammonium transmembrane transporter activity	5.48E-05
6	GO:0042284: sphingolipid delta-4 desaturase activity	1.34E-04
7	GO:0005528: FK506 binding	1.41E-04
8	GO:0015120: phosphoglycerate transmembrane transporter activity	4.45E-04
9	GO:0010011: auxin binding	4.45E-04
10	GO:0052793: pectin acetylesterase activity	4.45E-04
11	GO:0043495: protein anchor	4.45E-04
12	GO:0015204: urea transmembrane transporter activity	4.45E-04
13	GO:0015250: water channel activity	5.19E-04
14	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	6.92E-04
15	GO:0008519: ammonium transmembrane transporter activity	6.92E-04
16	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	6.92E-04
17	GO:0004017: adenylate kinase activity	8.25E-04
18	GO:0003993: acid phosphatase activity	8.75E-04
19	GO:0052689: carboxylic ester hydrolase activity	9.91E-04
20	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.24E-03
21	GO:0008083: growth factor activity	2.49E-03
22	GO:0016829: lyase activity	2.70E-03
23	GO:0004707: MAP kinase activity	3.54E-03
24	GO:0030570: pectate lyase activity	4.00E-03
25	GO:0008514: organic anion transmembrane transporter activity	4.23E-03
26	GO:0010181: FMN binding	5.22E-03
27	GO:0016788: hydrolase activity, acting on ester bonds	5.38E-03
28	GO:0016791: phosphatase activity	6.55E-03
29	GO:0004722: protein serine/threonine phosphatase activity	8.58E-03
30	GO:0016491: oxidoreductase activity	1.01E-02
31	GO:0043621: protein self-association	1.33E-02
32	GO:0003690: double-stranded DNA binding	1.59E-02
33	GO:0004650: polygalacturonase activity	1.87E-02
34	GO:0016874: ligase activity	1.91E-02
35	GO:0016746: transferase activity, transferring acyl groups	2.04E-02
36	GO:0005516: calmodulin binding	2.59E-02
37	GO:0015297: antiporter activity	2.85E-02
38	GO:0005509: calcium ion binding	3.21E-02
39	GO:0042802: identical protein binding	3.49E-02
40	GO:0005215: transporter activity	3.85E-02
41	GO:0004601: peroxidase activity	4.01E-02
42	GO:0004842: ubiquitin-protein transferase activity	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009930: longitudinal side of cell surface	0.00E+00
3	GO:0044391: ribosomal subunit	0.00E+00
4	GO:0009543: chloroplast thylakoid lumen	1.48E-05
5	GO:0009505: plant-type cell wall	5.55E-05
6	GO:0031977: thylakoid lumen	6.42E-05
7	GO:0009534: chloroplast thylakoid	8.77E-05
8	GO:0016328: lateral plasma membrane	2.28E-04
9	GO:0009897: external side of plasma membrane	2.28E-04
10	GO:0009579: thylakoid	6.28E-04
11	GO:0005886: plasma membrane	7.52E-04
12	GO:0042807: central vacuole	9.62E-04
13	GO:0009535: chloroplast thylakoid membrane	1.06E-03
14	GO:0000326: protein storage vacuole	1.26E-03
15	GO:0008180: COP9 signalosome	1.41E-03
16	GO:0005576: extracellular region	1.90E-03
17	GO:0030095: chloroplast photosystem II	2.49E-03
18	GO:0043234: protein complex	2.90E-03
19	GO:0009654: photosystem II oxygen evolving complex	3.32E-03
20	GO:0009705: plant-type vacuole membrane	3.43E-03
21	GO:0009507: chloroplast	3.65E-03
22	GO:0031225: anchored component of membrane	5.11E-03
23	GO:0019898: extrinsic component of membrane	5.48E-03
24	GO:0031969: chloroplast membrane	6.54E-03
25	GO:0009570: chloroplast stroma	6.91E-03
26	GO:0019005: SCF ubiquitin ligase complex	8.91E-03
27	GO:0005887: integral component of plasma membrane	1.31E-02
28	GO:0000502: proteasome complex	1.55E-02
29	GO:0009506: plasmodesma	2.31E-02
30	GO:0005768: endosome	3.13E-02
31	GO:0005615: extracellular space	3.19E-02
32	GO:0046658: anchored component of plasma membrane	3.59E-02
33	GO:0005840: ribosome	3.65E-02
34	GO:0009941: chloroplast envelope	4.96E-02