GO Enrichment Analysis of Co-expressed Genes with
AT3G02830
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015822: ornithine transport | 0.00E+00 |
| 2 | GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene | 0.00E+00 |
| 3 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 4 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 5 | GO:0009106: lipoate metabolic process | 0.00E+00 |
| 6 | GO:0090393: sepal giant cell development | 0.00E+00 |
| 7 | GO:0009249: protein lipoylation | 0.00E+00 |
| 8 | GO:0016117: carotenoid biosynthetic process | 1.32E-08 |
| 9 | GO:0019253: reductive pentose-phosphate cycle | 9.11E-06 |
| 10 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.33E-05 |
| 11 | GO:0009765: photosynthesis, light harvesting | 1.33E-05 |
| 12 | GO:0006546: glycine catabolic process | 1.33E-05 |
| 13 | GO:0016120: carotene biosynthetic process | 2.18E-05 |
| 14 | GO:0016123: xanthophyll biosynthetic process | 2.18E-05 |
| 15 | GO:0009744: response to sucrose | 2.33E-05 |
| 16 | GO:0006096: glycolytic process | 5.79E-05 |
| 17 | GO:0006438: valyl-tRNA aminoacylation | 1.25E-04 |
| 18 | GO:0071370: cellular response to gibberellin stimulus | 1.25E-04 |
| 19 | GO:0010480: microsporocyte differentiation | 1.25E-04 |
| 20 | GO:0000066: mitochondrial ornithine transport | 1.25E-04 |
| 21 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.10E-04 |
| 22 | GO:0006006: glucose metabolic process | 2.77E-04 |
| 23 | GO:0006094: gluconeogenesis | 2.77E-04 |
| 24 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.90E-04 |
| 25 | GO:2000123: positive regulation of stomatal complex development | 2.90E-04 |
| 26 | GO:0006000: fructose metabolic process | 4.78E-04 |
| 27 | GO:0006696: ergosterol biosynthetic process | 4.78E-04 |
| 28 | GO:0055114: oxidation-reduction process | 4.99E-04 |
| 29 | GO:0009416: response to light stimulus | 5.36E-04 |
| 30 | GO:0080092: regulation of pollen tube growth | 5.76E-04 |
| 31 | GO:0032877: positive regulation of DNA endoreduplication | 6.85E-04 |
| 32 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 6.85E-04 |
| 33 | GO:0009409: response to cold | 8.01E-04 |
| 34 | GO:0045727: positive regulation of translation | 9.08E-04 |
| 35 | GO:2000122: negative regulation of stomatal complex development | 9.08E-04 |
| 36 | GO:2000038: regulation of stomatal complex development | 9.08E-04 |
| 37 | GO:0010037: response to carbon dioxide | 9.08E-04 |
| 38 | GO:0006542: glutamine biosynthetic process | 9.08E-04 |
| 39 | GO:0019676: ammonia assimilation cycle | 9.08E-04 |
| 40 | GO:0015976: carbon utilization | 9.08E-04 |
| 41 | GO:0006810: transport | 9.39E-04 |
| 42 | GO:0010158: abaxial cell fate specification | 1.15E-03 |
| 43 | GO:0010375: stomatal complex patterning | 1.15E-03 |
| 44 | GO:0010236: plastoquinone biosynthetic process | 1.15E-03 |
| 45 | GO:0009107: lipoate biosynthetic process | 1.15E-03 |
| 46 | GO:1902183: regulation of shoot apical meristem development | 1.15E-03 |
| 47 | GO:0070814: hydrogen sulfide biosynthetic process | 1.41E-03 |
| 48 | GO:0016554: cytidine to uridine editing | 1.41E-03 |
| 49 | GO:0010190: cytochrome b6f complex assembly | 1.41E-03 |
| 50 | GO:0009635: response to herbicide | 1.41E-03 |
| 51 | GO:0050665: hydrogen peroxide biosynthetic process | 1.41E-03 |
| 52 | GO:0042549: photosystem II stabilization | 1.41E-03 |
| 53 | GO:0042128: nitrate assimilation | 1.65E-03 |
| 54 | GO:0042026: protein refolding | 1.68E-03 |
| 55 | GO:0006458: 'de novo' protein folding | 1.68E-03 |
| 56 | GO:0009854: oxidative photosynthetic carbon pathway | 1.68E-03 |
| 57 | GO:0048437: floral organ development | 1.98E-03 |
| 58 | GO:0008610: lipid biosynthetic process | 2.29E-03 |
| 59 | GO:0052543: callose deposition in cell wall | 2.29E-03 |
| 60 | GO:0016559: peroxisome fission | 2.29E-03 |
| 61 | GO:0006002: fructose 6-phosphate metabolic process | 2.61E-03 |
| 62 | GO:0022900: electron transport chain | 2.61E-03 |
| 63 | GO:0006075: (1->3)-beta-D-glucan biosynthetic process | 2.61E-03 |
| 64 | GO:0048193: Golgi vesicle transport | 2.61E-03 |
| 65 | GO:0032544: plastid translation | 2.61E-03 |
| 66 | GO:0006839: mitochondrial transport | 2.76E-03 |
| 67 | GO:0006098: pentose-phosphate shunt | 2.95E-03 |
| 68 | GO:0009821: alkaloid biosynthetic process | 2.95E-03 |
| 69 | GO:2000024: regulation of leaf development | 2.95E-03 |
| 70 | GO:0006754: ATP biosynthetic process | 2.95E-03 |
| 71 | GO:1900865: chloroplast RNA modification | 3.31E-03 |
| 72 | GO:0009970: cellular response to sulfate starvation | 3.68E-03 |
| 73 | GO:0000103: sulfate assimilation | 3.68E-03 |
| 74 | GO:0010192: mucilage biosynthetic process | 3.68E-03 |
| 75 | GO:0046686: response to cadmium ion | 4.00E-03 |
| 76 | GO:0000038: very long-chain fatty acid metabolic process | 4.06E-03 |
| 77 | GO:0009773: photosynthetic electron transport in photosystem I | 4.06E-03 |
| 78 | GO:0006415: translational termination | 4.06E-03 |
| 79 | GO:0043085: positive regulation of catalytic activity | 4.06E-03 |
| 80 | GO:0000272: polysaccharide catabolic process | 4.06E-03 |
| 81 | GO:0048229: gametophyte development | 4.06E-03 |
| 82 | GO:0015979: photosynthesis | 4.15E-03 |
| 83 | GO:0015706: nitrate transport | 4.45E-03 |
| 84 | GO:0005986: sucrose biosynthetic process | 4.86E-03 |
| 85 | GO:0010075: regulation of meristem growth | 4.86E-03 |
| 86 | GO:0009725: response to hormone | 4.86E-03 |
| 87 | GO:0009767: photosynthetic electron transport chain | 4.86E-03 |
| 88 | GO:0010207: photosystem II assembly | 5.28E-03 |
| 89 | GO:0009934: regulation of meristem structural organization | 5.28E-03 |
| 90 | GO:0007031: peroxisome organization | 5.71E-03 |
| 91 | GO:0010167: response to nitrate | 5.71E-03 |
| 92 | GO:0005985: sucrose metabolic process | 5.71E-03 |
| 93 | GO:0006636: unsaturated fatty acid biosynthetic process | 6.15E-03 |
| 94 | GO:0009833: plant-type primary cell wall biogenesis | 6.15E-03 |
| 95 | GO:0009742: brassinosteroid mediated signaling pathway | 6.32E-03 |
| 96 | GO:0009944: polarity specification of adaxial/abaxial axis | 6.61E-03 |
| 97 | GO:0006418: tRNA aminoacylation for protein translation | 7.08E-03 |
| 98 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.08E-03 |
| 99 | GO:0042742: defense response to bacterium | 7.49E-03 |
| 100 | GO:0061077: chaperone-mediated protein folding | 7.56E-03 |
| 101 | GO:0006730: one-carbon metabolic process | 8.05E-03 |
| 102 | GO:0007005: mitochondrion organization | 8.05E-03 |
| 103 | GO:0006633: fatty acid biosynthetic process | 9.37E-03 |
| 104 | GO:0048653: anther development | 1.01E-02 |
| 105 | GO:0042631: cellular response to water deprivation | 1.01E-02 |
| 106 | GO:0042335: cuticle development | 1.01E-02 |
| 107 | GO:0080022: primary root development | 1.01E-02 |
| 108 | GO:0008360: regulation of cell shape | 1.07E-02 |
| 109 | GO:0010154: fruit development | 1.07E-02 |
| 110 | GO:0006662: glycerol ether metabolic process | 1.07E-02 |
| 111 | GO:0007059: chromosome segregation | 1.12E-02 |
| 112 | GO:0019252: starch biosynthetic process | 1.18E-02 |
| 113 | GO:0007264: small GTPase mediated signal transduction | 1.30E-02 |
| 114 | GO:0010583: response to cyclopentenone | 1.30E-02 |
| 115 | GO:0005975: carbohydrate metabolic process | 1.41E-02 |
| 116 | GO:0007267: cell-cell signaling | 1.48E-02 |
| 117 | GO:0051607: defense response to virus | 1.54E-02 |
| 118 | GO:0016126: sterol biosynthetic process | 1.61E-02 |
| 119 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 1.67E-02 |
| 120 | GO:0009817: defense response to fungus, incompatible interaction | 1.94E-02 |
| 121 | GO:0048481: plant ovule development | 1.94E-02 |
| 122 | GO:0030244: cellulose biosynthetic process | 1.94E-02 |
| 123 | GO:0018298: protein-chromophore linkage | 1.94E-02 |
| 124 | GO:0009832: plant-type cell wall biogenesis | 2.01E-02 |
| 125 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.05E-02 |
| 126 | GO:0010218: response to far red light | 2.08E-02 |
| 127 | GO:0010119: regulation of stomatal movement | 2.15E-02 |
| 128 | GO:0007568: aging | 2.15E-02 |
| 129 | GO:0009853: photorespiration | 2.30E-02 |
| 130 | GO:0016051: carbohydrate biosynthetic process | 2.30E-02 |
| 131 | GO:0009637: response to blue light | 2.30E-02 |
| 132 | GO:0034599: cellular response to oxidative stress | 2.37E-02 |
| 133 | GO:0045454: cell redox homeostasis | 2.38E-02 |
| 134 | GO:0010114: response to red light | 2.75E-02 |
| 135 | GO:0008152: metabolic process | 3.23E-02 |
| 136 | GO:0006364: rRNA processing | 3.40E-02 |
| 137 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.49E-02 |
| 138 | GO:0006857: oligopeptide transport | 3.57E-02 |
| 139 | GO:0048316: seed development | 3.92E-02 |
| 140 | GO:0048367: shoot system development | 3.92E-02 |
| 141 | GO:0009735: response to cytokinin | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 2 | GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity | 0.00E+00 |
| 3 | GO:0050613: delta14-sterol reductase activity | 0.00E+00 |
| 4 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 5 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 6 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 7 | GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity | 0.00E+00 |
| 8 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 9 | GO:0033819: lipoyl(octanoyl) transferase activity | 0.00E+00 |
| 10 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 11 | GO:0016719: carotene 7,8-desaturase activity | 0.00E+00 |
| 12 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 13 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 7.96E-07 |
| 14 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 7.04E-06 |
| 15 | GO:0008252: nucleotidase activity | 1.25E-04 |
| 16 | GO:0051996: squalene synthase activity | 1.25E-04 |
| 17 | GO:0004832: valine-tRNA ligase activity | 1.25E-04 |
| 18 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 2.10E-04 |
| 19 | GO:0004089: carbonate dehydratase activity | 2.77E-04 |
| 20 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.90E-04 |
| 21 | GO:0000064: L-ornithine transmembrane transporter activity | 2.90E-04 |
| 22 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 2.90E-04 |
| 23 | GO:0010291: carotene beta-ring hydroxylase activity | 2.90E-04 |
| 24 | GO:0017118: lipoyltransferase activity | 2.90E-04 |
| 25 | GO:0042389: omega-3 fatty acid desaturase activity | 2.90E-04 |
| 26 | GO:0010297: heteropolysaccharide binding | 2.90E-04 |
| 27 | GO:0016415: octanoyltransferase activity | 2.90E-04 |
| 28 | GO:0004047: aminomethyltransferase activity | 2.90E-04 |
| 29 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.78E-04 |
| 30 | GO:0004781: sulfate adenylyltransferase (ATP) activity | 4.78E-04 |
| 31 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 6.85E-04 |
| 32 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 6.85E-04 |
| 33 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 6.85E-04 |
| 34 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 6.85E-04 |
| 35 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 6.85E-04 |
| 36 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 6.85E-04 |
| 37 | GO:0001872: (1->3)-beta-D-glucan binding | 6.85E-04 |
| 38 | GO:0008891: glycolate oxidase activity | 9.08E-04 |
| 39 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 9.08E-04 |
| 40 | GO:0004356: glutamate-ammonia ligase activity | 1.15E-03 |
| 41 | GO:0004332: fructose-bisphosphate aldolase activity | 1.41E-03 |
| 42 | GO:0042578: phosphoric ester hydrolase activity | 1.41E-03 |
| 43 | GO:0080030: methyl indole-3-acetate esterase activity | 1.41E-03 |
| 44 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.68E-03 |
| 45 | GO:0004564: beta-fructofuranosidase activity | 2.29E-03 |
| 46 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.61E-03 |
| 47 | GO:0003843: 1,3-beta-D-glucan synthase activity | 2.61E-03 |
| 48 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 2.95E-03 |
| 49 | GO:0003747: translation release factor activity | 2.95E-03 |
| 50 | GO:0004575: sucrose alpha-glucosidase activity | 3.31E-03 |
| 51 | GO:0016844: strictosidine synthase activity | 3.31E-03 |
| 52 | GO:0015112: nitrate transmembrane transporter activity | 3.31E-03 |
| 53 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.37E-03 |
| 54 | GO:0008047: enzyme activator activity | 3.68E-03 |
| 55 | GO:0004860: protein kinase inhibitor activity | 4.06E-03 |
| 56 | GO:0044183: protein binding involved in protein folding | 4.06E-03 |
| 57 | GO:0004565: beta-galactosidase activity | 4.86E-03 |
| 58 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 6.15E-03 |
| 59 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 6.15E-03 |
| 60 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 6.15E-03 |
| 61 | GO:0031409: pigment binding | 6.15E-03 |
| 62 | GO:0005528: FK506 binding | 6.61E-03 |
| 63 | GO:0019843: rRNA binding | 7.46E-03 |
| 64 | GO:0033612: receptor serine/threonine kinase binding | 7.56E-03 |
| 65 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 7.66E-03 |
| 66 | GO:0016760: cellulose synthase (UDP-forming) activity | 8.56E-03 |
| 67 | GO:0047134: protein-disulfide reductase activity | 9.60E-03 |
| 68 | GO:0004812: aminoacyl-tRNA ligase activity | 9.60E-03 |
| 69 | GO:0008080: N-acetyltransferase activity | 1.07E-02 |
| 70 | GO:0010181: FMN binding | 1.12E-02 |
| 71 | GO:0050662: coenzyme binding | 1.12E-02 |
| 72 | GO:0004791: thioredoxin-disulfide reductase activity | 1.12E-02 |
| 73 | GO:0019901: protein kinase binding | 1.18E-02 |
| 74 | GO:0004872: receptor activity | 1.18E-02 |
| 75 | GO:0048038: quinone binding | 1.24E-02 |
| 76 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.36E-02 |
| 77 | GO:0016759: cellulose synthase activity | 1.42E-02 |
| 78 | GO:0008483: transaminase activity | 1.48E-02 |
| 79 | GO:0016597: amino acid binding | 1.54E-02 |
| 80 | GO:0016788: hydrolase activity, acting on ester bonds | 1.63E-02 |
| 81 | GO:0016168: chlorophyll binding | 1.67E-02 |
| 82 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.70E-02 |
| 83 | GO:0030247: polysaccharide binding | 1.81E-02 |
| 84 | GO:0050897: cobalt ion binding | 2.15E-02 |
| 85 | GO:0016787: hydrolase activity | 2.35E-02 |
| 86 | GO:0003993: acid phosphatase activity | 2.37E-02 |
| 87 | GO:0050661: NADP binding | 2.52E-02 |
| 88 | GO:0004185: serine-type carboxypeptidase activity | 2.75E-02 |
| 89 | GO:0043621: protein self-association | 2.91E-02 |
| 90 | GO:0005198: structural molecule activity | 2.99E-02 |
| 91 | GO:0015293: symporter activity | 2.99E-02 |
| 92 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.07E-02 |
| 93 | GO:0051287: NAD binding | 3.15E-02 |
| 94 | GO:0003824: catalytic activity | 3.26E-02 |
| 95 | GO:0005515: protein binding | 3.60E-02 |
| 96 | GO:0016491: oxidoreductase activity | 4.07E-02 |
| 97 | GO:0004650: polygalacturonase activity | 4.10E-02 |
| 98 | GO:0051082: unfolded protein binding | 4.37E-02 |
| 99 | GO:0015035: protein disulfide oxidoreductase activity | 4.47E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 4.79E-22 |
| 2 | GO:0009941: chloroplast envelope | 2.08E-14 |
| 3 | GO:0009570: chloroplast stroma | 4.11E-13 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 3.99E-09 |
| 5 | GO:0048046: apoplast | 5.75E-07 |
| 6 | GO:0009579: thylakoid | 1.68E-06 |
| 7 | GO:0010319: stromule | 3.67E-06 |
| 8 | GO:0031969: chloroplast membrane | 6.93E-06 |
| 9 | GO:0005960: glycine cleavage complex | 7.04E-06 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 8.42E-06 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 1.91E-05 |
| 12 | GO:0010287: plastoglobule | 1.11E-04 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.25E-04 |
| 14 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.25E-04 |
| 15 | GO:0045254: pyruvate dehydrogenase complex | 2.90E-04 |
| 16 | GO:0042170: plastid membrane | 2.90E-04 |
| 17 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.90E-04 |
| 18 | GO:0030095: chloroplast photosystem II | 3.14E-04 |
| 19 | GO:0009509: chromoplast | 4.78E-04 |
| 20 | GO:0005775: vacuolar lumen | 6.85E-04 |
| 21 | GO:0009534: chloroplast thylakoid | 7.48E-04 |
| 22 | GO:0009523: photosystem II | 9.76E-04 |
| 23 | GO:0019898: extrinsic component of membrane | 9.76E-04 |
| 24 | GO:0046658: anchored component of plasma membrane | 2.19E-03 |
| 25 | GO:0005779: integral component of peroxisomal membrane | 2.61E-03 |
| 26 | GO:0000148: 1,3-beta-D-glucan synthase complex | 2.61E-03 |
| 27 | GO:0009539: photosystem II reaction center | 2.61E-03 |
| 28 | GO:0031902: late endosome membrane | 2.88E-03 |
| 29 | GO:0031977: thylakoid lumen | 2.88E-03 |
| 30 | GO:0016324: apical plasma membrane | 3.68E-03 |
| 31 | GO:0005765: lysosomal membrane | 4.06E-03 |
| 32 | GO:0031225: anchored component of membrane | 5.05E-03 |
| 33 | GO:0030176: integral component of endoplasmic reticulum membrane | 5.71E-03 |
| 34 | GO:0030076: light-harvesting complex | 5.71E-03 |
| 35 | GO:0005759: mitochondrial matrix | 9.37E-03 |
| 36 | GO:0009505: plant-type cell wall | 1.05E-02 |
| 37 | GO:0009522: photosystem I | 1.12E-02 |
| 38 | GO:0022626: cytosolic ribosome | 1.13E-02 |
| 39 | GO:0005777: peroxisome | 1.42E-02 |
| 40 | GO:0005778: peroxisomal membrane | 1.48E-02 |
| 41 | GO:0000325: plant-type vacuole | 2.15E-02 |
| 42 | GO:0005819: spindle | 2.45E-02 |
| 43 | GO:0005743: mitochondrial inner membrane | 2.73E-02 |
| 44 | GO:0005773: vacuole | 3.29E-02 |
| 45 | GO:0005747: mitochondrial respiratory chain complex I | 3.92E-02 |
| 46 | GO:0009706: chloroplast inner membrane | 4.37E-02 |