co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G02730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0098586: cellular response to virus	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0061635: regulation of protein complex stability	0.00E+00
4	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:0017038: protein import	0.00E+00
7	GO:0000372: Group I intron splicing	0.00E+00
8	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
9	GO:0015670: carbon dioxide transport	0.00E+00
10	GO:0006399: tRNA metabolic process	0.00E+00
11	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
12	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
13	GO:0009773: photosynthetic electron transport in photosystem I	6.68E-11
14	GO:0015979: photosynthesis	1.11E-09
15	GO:0010027: thylakoid membrane organization	1.86E-09
16	GO:0090391: granum assembly	1.33E-05
17	GO:0071484: cellular response to light intensity	2.99E-05
18	GO:0015994: chlorophyll metabolic process	5.37E-05
19	GO:0010021: amylopectin biosynthetic process	5.37E-05
20	GO:0006655: phosphatidylglycerol biosynthetic process	1.23E-04
21	GO:0042549: photosystem II stabilization	1.23E-04
22	GO:0010196: nonphotochemical quenching	2.21E-04
23	GO:0009644: response to high light intensity	2.26E-04
24	GO:0009704: de-etiolation	2.80E-04
25	GO:0043953: protein transport by the Tat complex	2.84E-04
26	GO:0071277: cellular response to calcium ion	2.84E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	2.84E-04
28	GO:1904964: positive regulation of phytol biosynthetic process	2.84E-04
29	GO:0065002: intracellular protein transmembrane transport	2.84E-04
30	GO:0043686: co-translational protein modification	2.84E-04
31	GO:0034337: RNA folding	2.84E-04
32	GO:0019252: starch biosynthetic process	3.21E-04
33	GO:0032544: plastid translation	3.44E-04
34	GO:0000373: Group II intron splicing	4.15E-04
35	GO:0009658: chloroplast organization	5.23E-04
36	GO:0046741: transport of virus in host, tissue to tissue	6.25E-04
37	GO:0009915: phloem sucrose loading	6.25E-04
38	GO:0035304: regulation of protein dephosphorylation	6.25E-04
39	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.25E-04
40	GO:0080005: photosystem stoichiometry adjustment	6.25E-04
41	GO:0034755: iron ion transmembrane transport	6.25E-04
42	GO:0071457: cellular response to ozone	6.25E-04
43	GO:0018026: peptidyl-lysine monomethylation	6.25E-04
44	GO:0009662: etioplast organization	6.25E-04
45	GO:0016122: xanthophyll metabolic process	6.25E-04
46	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.25E-04
47	GO:0010270: photosystem II oxygen evolving complex assembly	6.25E-04
48	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.25E-04
49	GO:0018298: protein-chromophore linkage	7.94E-04
50	GO:0006094: gluconeogenesis	8.57E-04
51	GO:0009735: response to cytokinin	9.24E-04
52	GO:0010207: photosystem II assembly	9.62E-04
53	GO:0010020: chloroplast fission	9.62E-04
54	GO:1902448: positive regulation of shade avoidance	1.01E-03
55	GO:0006000: fructose metabolic process	1.01E-03
56	GO:0006954: inflammatory response	1.01E-03
57	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.01E-03
58	GO:0051604: protein maturation	1.01E-03
59	GO:0016050: vesicle organization	1.01E-03
60	GO:0031022: nuclear migration along microfilament	1.01E-03
61	GO:0006833: water transport	1.19E-03
62	GO:0080170: hydrogen peroxide transmembrane transport	1.45E-03
63	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.45E-03
64	GO:0043572: plastid fission	1.45E-03
65	GO:2001141: regulation of RNA biosynthetic process	1.45E-03
66	GO:0010371: regulation of gibberellin biosynthetic process	1.45E-03
67	GO:0009152: purine ribonucleotide biosynthetic process	1.45E-03
68	GO:0046653: tetrahydrofolate metabolic process	1.45E-03
69	GO:0055085: transmembrane transport	1.76E-03
70	GO:0045727: positive regulation of translation	1.94E-03
71	GO:0010109: regulation of photosynthesis	1.94E-03
72	GO:0071486: cellular response to high light intensity	1.94E-03
73	GO:0006661: phosphatidylinositol biosynthetic process	1.94E-03
74	GO:0009765: photosynthesis, light harvesting	1.94E-03
75	GO:0034220: ion transmembrane transport	2.42E-03
76	GO:0071493: cellular response to UV-B	2.48E-03
77	GO:0016120: carotene biosynthetic process	2.48E-03
78	GO:0032543: mitochondrial translation	2.48E-03
79	GO:0010117: photoprotection	2.48E-03
80	GO:0006564: L-serine biosynthetic process	2.48E-03
81	GO:0009904: chloroplast accumulation movement	2.48E-03
82	GO:0045038: protein import into chloroplast thylakoid membrane	2.48E-03
83	GO:0031365: N-terminal protein amino acid modification	2.48E-03
84	GO:0006461: protein complex assembly	2.48E-03
85	GO:0016554: cytidine to uridine editing	3.06E-03
86	GO:0006828: manganese ion transport	3.06E-03
87	GO:0010190: cytochrome b6f complex assembly	3.06E-03
88	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.06E-03
89	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.06E-03
90	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.06E-03
91	GO:0000470: maturation of LSU-rRNA	3.06E-03
92	GO:1901259: chloroplast rRNA processing	3.68E-03
93	GO:0009903: chloroplast avoidance movement	3.68E-03
94	GO:0010189: vitamin E biosynthetic process	3.68E-03
95	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.34E-03
96	GO:1900057: positive regulation of leaf senescence	4.34E-03
97	GO:0009645: response to low light intensity stimulus	4.34E-03
98	GO:0006400: tRNA modification	4.34E-03
99	GO:0009772: photosynthetic electron transport in photosystem II	4.34E-03
100	GO:0008610: lipid biosynthetic process	5.03E-03
101	GO:0005978: glycogen biosynthetic process	5.03E-03
102	GO:0030091: protein repair	5.03E-03
103	GO:0006605: protein targeting	5.03E-03
104	GO:0010492: maintenance of shoot apical meristem identity	5.03E-03
105	GO:0016559: peroxisome fission	5.03E-03
106	GO:0019430: removal of superoxide radicals	5.77E-03
107	GO:0009657: plastid organization	5.77E-03
108	GO:0006002: fructose 6-phosphate metabolic process	5.77E-03
109	GO:0071482: cellular response to light stimulus	5.77E-03
110	GO:0015996: chlorophyll catabolic process	5.77E-03
111	GO:0006098: pentose-phosphate shunt	6.54E-03
112	GO:0048507: meristem development	6.54E-03
113	GO:0090333: regulation of stomatal closure	6.54E-03
114	GO:0006754: ATP biosynthetic process	6.54E-03
115	GO:0007623: circadian rhythm	6.71E-03
116	GO:0008152: metabolic process	7.33E-03
117	GO:1900865: chloroplast RNA modification	7.35E-03
118	GO:0005982: starch metabolic process	7.35E-03
119	GO:0010205: photoinhibition	7.35E-03
120	GO:0006816: calcium ion transport	9.06E-03
121	GO:0019684: photosynthesis, light reaction	9.06E-03
122	GO:0008285: negative regulation of cell proliferation	9.06E-03
123	GO:0009073: aromatic amino acid family biosynthetic process	9.06E-03
124	GO:0006879: cellular iron ion homeostasis	9.06E-03
125	GO:0006352: DNA-templated transcription, initiation	9.06E-03
126	GO:0005983: starch catabolic process	9.96E-03
127	GO:0016024: CDP-diacylglycerol biosynthetic process	9.96E-03
128	GO:0010628: positive regulation of gene expression	1.09E-02
129	GO:0005986: sucrose biosynthetic process	1.09E-02
130	GO:0019253: reductive pentose-phosphate cycle	1.19E-02
131	GO:0009266: response to temperature stimulus	1.19E-02
132	GO:0005985: sucrose metabolic process	1.29E-02
133	GO:0006364: rRNA processing	1.34E-02
134	GO:0010025: wax biosynthetic process	1.39E-02
135	GO:0006096: glycolytic process	1.59E-02
136	GO:0006418: tRNA aminoacylation for protein translation	1.60E-02
137	GO:0007017: microtubule-based process	1.60E-02
138	GO:0009695: jasmonic acid biosynthetic process	1.60E-02
139	GO:0009768: photosynthesis, light harvesting in photosystem I	1.60E-02
140	GO:0010073: meristem maintenance	1.60E-02
141	GO:0051302: regulation of cell division	1.60E-02
142	GO:0008299: isoprenoid biosynthetic process	1.60E-02
143	GO:0031408: oxylipin biosynthetic process	1.72E-02
144	GO:0016226: iron-sulfur cluster assembly	1.83E-02
145	GO:0010227: floral organ abscission	1.95E-02
146	GO:0009561: megagametogenesis	2.07E-02
147	GO:0016117: carotenoid biosynthetic process	2.19E-02
148	GO:0000413: protein peptidyl-prolyl isomerization	2.31E-02
149	GO:0071472: cellular response to salt stress	2.44E-02
150	GO:0015986: ATP synthesis coupled proton transport	2.57E-02
151	GO:0007018: microtubule-based movement	2.57E-02
152	GO:0009646: response to absence of light	2.57E-02
153	GO:0006397: mRNA processing	2.65E-02
154	GO:0008654: phospholipid biosynthetic process	2.70E-02
155	GO:0000302: response to reactive oxygen species	2.83E-02
156	GO:0016032: viral process	2.97E-02
157	GO:0010090: trichome morphogenesis	3.11E-02
158	GO:0009567: double fertilization forming a zygote and endosperm	3.25E-02
159	GO:0009451: RNA modification	3.38E-02
160	GO:0001666: response to hypoxia	3.68E-02
161	GO:0015995: chlorophyll biosynthetic process	4.13E-02
162	GO:0006979: response to oxidative stress	4.30E-02
163	GO:0000160: phosphorelay signal transduction system	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0009976: tocopherol cyclase activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
4	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
5	GO:0004823: leucine-tRNA ligase activity	0.00E+00
6	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
7	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
8	GO:0005048: signal sequence binding	0.00E+00
9	GO:0046608: carotenoid isomerase activity	0.00E+00
10	GO:0009011: starch synthase activity	5.37E-05
11	GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity	2.84E-04
12	GO:0017169: CDP-alcohol phosphatidyltransferase activity	2.84E-04
13	GO:0050308: sugar-phosphatase activity	2.84E-04
14	GO:0004856: xylulokinase activity	2.84E-04
15	GO:0010242: oxygen evolving activity	2.84E-04
16	GO:0004321: fatty-acyl-CoA synthase activity	2.84E-04
17	GO:0019203: carbohydrate phosphatase activity	2.84E-04
18	GO:0042586: peptide deformylase activity	2.84E-04
19	GO:0034256: chlorophyll(ide) b reductase activity	2.84E-04
20	GO:0005080: protein kinase C binding	2.84E-04
21	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.84E-04
22	GO:0035671: enone reductase activity	2.84E-04
23	GO:0050139: nicotinate-N-glucosyltransferase activity	2.84E-04
24	GO:0016168: chlorophyll binding	6.09E-04
25	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.25E-04
26	GO:0047746: chlorophyllase activity	6.25E-04
27	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.25E-04
28	GO:0004617: phosphoglycerate dehydrogenase activity	6.25E-04
29	GO:0033201: alpha-1,4-glucan synthase activity	6.25E-04
30	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.25E-04
31	GO:0019843: rRNA binding	7.98E-04
32	GO:0008266: poly(U) RNA binding	9.62E-04
33	GO:0043169: cation binding	1.01E-03
34	GO:0004373: glycogen (starch) synthase activity	1.01E-03
35	GO:0002161: aminoacyl-tRNA editing activity	1.01E-03
36	GO:0004751: ribose-5-phosphate isomerase activity	1.01E-03
37	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.01E-03
38	GO:0070402: NADPH binding	1.01E-03
39	GO:0008864: formyltetrahydrofolate deformylase activity	1.01E-03
40	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.01E-03
41	GO:0005528: FK506 binding	1.32E-03
42	GO:0016851: magnesium chelatase activity	1.45E-03
43	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.45E-03
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.78E-03
45	GO:0042802: identical protein binding	1.86E-03
46	GO:0022891: substrate-specific transmembrane transporter activity	1.91E-03
47	GO:0016987: sigma factor activity	1.94E-03
48	GO:0043495: protein anchor	1.94E-03
49	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.94E-03
50	GO:0016279: protein-lysine N-methyltransferase activity	1.94E-03
51	GO:0001053: plastid sigma factor activity	1.94E-03
52	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.94E-03
53	GO:0004045: aminoacyl-tRNA hydrolase activity	1.94E-03
54	GO:0016787: hydrolase activity	2.47E-03
55	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.48E-03
56	GO:0016853: isomerase activity	2.80E-03
57	GO:0004784: superoxide dismutase activity	3.06E-03
58	GO:0042578: phosphoric ester hydrolase activity	3.06E-03
59	GO:2001070: starch binding	3.06E-03
60	GO:0004332: fructose-bisphosphate aldolase activity	3.06E-03
61	GO:0016874: ligase activity	3.10E-03
62	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.68E-03
63	GO:0003723: RNA binding	4.19E-03
64	GO:0019899: enzyme binding	4.34E-03
65	GO:0004620: phospholipase activity	4.34E-03
66	GO:0015250: water channel activity	4.64E-03
67	GO:0043022: ribosome binding	5.03E-03
68	GO:0008312: 7S RNA binding	5.03E-03
69	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.54E-03
70	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.54E-03
71	GO:0016207: 4-coumarate-CoA ligase activity	6.54E-03
72	GO:0030145: manganese ion binding	7.01E-03
73	GO:0005381: iron ion transmembrane transporter activity	7.35E-03
74	GO:0005384: manganese ion transmembrane transporter activity	7.35E-03
75	GO:0030234: enzyme regulator activity	8.19E-03
76	GO:0047372: acylglycerol lipase activity	9.06E-03
77	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	9.10E-03
78	GO:0005525: GTP binding	9.89E-03
79	GO:0004565: beta-galactosidase activity	1.09E-02
80	GO:0015095: magnesium ion transmembrane transporter activity	1.09E-02
81	GO:0031072: heat shock protein binding	1.09E-02
82	GO:0009982: pseudouridine synthase activity	1.09E-02
83	GO:0031409: pigment binding	1.39E-02
84	GO:0003777: microtubule motor activity	1.49E-02
85	GO:0051536: iron-sulfur cluster binding	1.50E-02
86	GO:0043424: protein histidine kinase binding	1.60E-02
87	GO:0004176: ATP-dependent peptidase activity	1.72E-02
88	GO:0004812: aminoacyl-tRNA ligase activity	2.19E-02
89	GO:0016491: oxidoreductase activity	2.26E-02
90	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.44E-02
91	GO:0050662: coenzyme binding	2.57E-02
92	GO:0003729: mRNA binding	2.78E-02
93	GO:0000156: phosphorelay response regulator activity	3.11E-02
94	GO:0008017: microtubule binding	3.46E-02
95	GO:0016597: amino acid binding	3.54E-02
96	GO:0003743: translation initiation factor activity	3.86E-02
97	GO:0008236: serine-type peptidase activity	4.29E-02
98	GO:0003824: catalytic activity	4.85E-02
99	GO:0005215: transporter activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	4.09E-72
5	GO:0009535: chloroplast thylakoid membrane	5.98E-34
6	GO:0009570: chloroplast stroma	8.17E-26
7	GO:0009534: chloroplast thylakoid	3.45E-23
8	GO:0009941: chloroplast envelope	2.26E-20
9	GO:0009579: thylakoid	1.40E-16
10	GO:0009543: chloroplast thylakoid lumen	7.17E-11
11	GO:0031977: thylakoid lumen	2.41E-08
12	GO:0010287: plastoglobule	6.39E-07
13	GO:0009654: photosystem II oxygen evolving complex	1.14E-04
14	GO:0031969: chloroplast membrane	1.46E-04
15	GO:0009533: chloroplast stromal thylakoid	2.21E-04
16	GO:0009501: amyloplast	2.80E-04
17	GO:0009782: photosystem I antenna complex	2.84E-04
18	GO:0031361: integral component of thylakoid membrane	2.84E-04
19	GO:0009523: photosystem II	3.21E-04
20	GO:0019898: extrinsic component of membrane	3.21E-04
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.15E-04
22	GO:0030529: intracellular ribonucleoprotein complex	5.68E-04
23	GO:0080085: signal recognition particle, chloroplast targeting	6.25E-04
24	GO:0030095: chloroplast photosystem II	9.62E-04
25	GO:0010007: magnesium chelatase complex	1.01E-03
26	GO:0033281: TAT protein transport complex	1.01E-03
27	GO:0042651: thylakoid membrane	1.45E-03
28	GO:0009526: plastid envelope	1.94E-03
29	GO:0009544: chloroplast ATP synthase complex	1.94E-03
30	GO:0030286: dynein complex	1.94E-03
31	GO:0055035: plastid thylakoid membrane	2.48E-03
32	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.06E-03
33	GO:0009706: chloroplast inner membrane	3.34E-03
34	GO:0010319: stromule	4.14E-03
35	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.77E-03
36	GO:0009707: chloroplast outer membrane	6.06E-03
37	GO:0008180: COP9 signalosome	6.54E-03
38	GO:0032040: small-subunit processome	9.96E-03
39	GO:0009508: plastid chromosome	1.09E-02
40	GO:0030076: light-harvesting complex	1.29E-02
41	GO:0005875: microtubule associated complex	1.39E-02
42	GO:0009532: plastid stroma	1.72E-02
43	GO:0016021: integral component of membrane	2.04E-02
44	GO:0005871: kinesin complex	2.19E-02
45	GO:0009295: nucleoid	3.39E-02
46	GO:0019005: SCF ubiquitin ligase complex	4.45E-02
47	GO:0005840: ribosome	4.55E-02
48	GO:0016020: membrane	4.90E-02
49	GO:0015934: large ribosomal subunit	4.93E-02