Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G02110

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010394: homogalacturonan metabolic process0.00E+00
2GO:0005996: monosaccharide metabolic process0.00E+00
3GO:0007638: mechanosensory behavior0.00E+00
4GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
5GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
6GO:0070125: mitochondrial translational elongation0.00E+00
7GO:0006223: uracil salvage0.00E+00
8GO:0032544: plastid translation1.38E-05
9GO:0042335: cuticle development1.93E-05
10GO:0006633: fatty acid biosynthetic process3.69E-05
11GO:0071555: cell wall organization3.84E-05
12GO:0009773: photosynthetic electron transport in photosystem I4.25E-05
13GO:0006546: glycine catabolic process6.70E-05
14GO:0016117: carotenoid biosynthetic process2.78E-04
15GO:0010442: guard cell morphogenesis3.24E-04
16GO:0045488: pectin metabolic process3.24E-04
17GO:1902458: positive regulation of stomatal opening3.24E-04
18GO:0071588: hydrogen peroxide mediated signaling pathway3.24E-04
19GO:0060627: regulation of vesicle-mediated transport3.24E-04
20GO:0010583: response to cyclopentenone4.91E-04
21GO:0006810: transport5.22E-04
22GO:0010192: mucilage biosynthetic process6.91E-04
23GO:0006695: cholesterol biosynthetic process7.07E-04
24GO:1903426: regulation of reactive oxygen species biosynthetic process7.07E-04
25GO:0030388: fructose 1,6-bisphosphate metabolic process7.07E-04
26GO:0043039: tRNA aminoacylation7.07E-04
27GO:0052541: plant-type cell wall cellulose metabolic process7.07E-04
28GO:0009658: chloroplast organization7.38E-04
29GO:0018119: peptidyl-cysteine S-nitrosylation7.96E-04
30GO:0000038: very long-chain fatty acid metabolic process7.96E-04
31GO:0006094: gluconeogenesis1.03E-03
32GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.14E-03
33GO:0006000: fructose metabolic process1.15E-03
34GO:0006518: peptide metabolic process1.15E-03
35GO:0010253: UDP-rhamnose biosynthetic process1.15E-03
36GO:0006696: ergosterol biosynthetic process1.15E-03
37GO:2001295: malonyl-CoA biosynthetic process1.15E-03
38GO:0006065: UDP-glucuronate biosynthetic process1.15E-03
39GO:0090506: axillary shoot meristem initiation1.15E-03
40GO:0010207: photosystem II assembly1.16E-03
41GO:0010020: chloroplast fission1.16E-03
42GO:0010025: wax biosynthetic process1.44E-03
43GO:0006833: water transport1.44E-03
44GO:0016556: mRNA modification1.65E-03
45GO:0043572: plastid fission1.65E-03
46GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.65E-03
47GO:0007231: osmosensory signaling pathway1.65E-03
48GO:0005975: carbohydrate metabolic process1.73E-03
49GO:0007017: microtubule-based process1.76E-03
50GO:0046686: response to cadmium ion1.84E-03
51GO:0055114: oxidation-reduction process2.17E-03
52GO:0033500: carbohydrate homeostasis2.21E-03
53GO:0045727: positive regulation of translation2.21E-03
54GO:0031122: cytoplasmic microtubule organization2.21E-03
55GO:0044206: UMP salvage2.21E-03
56GO:0010037: response to carbon dioxide2.21E-03
57GO:0006542: glutamine biosynthetic process2.21E-03
58GO:0019676: ammonia assimilation cycle2.21E-03
59GO:0015976: carbon utilization2.21E-03
60GO:0019464: glycine decarboxylation via glycine cleavage system2.21E-03
61GO:0009765: photosynthesis, light harvesting2.21E-03
62GO:2000122: negative regulation of stomatal complex development2.21E-03
63GO:0019722: calcium-mediated signaling2.50E-03
64GO:0046785: microtubule polymerization2.82E-03
65GO:0016120: carotene biosynthetic process2.82E-03
66GO:0006564: L-serine biosynthetic process2.82E-03
67GO:0010236: plastoquinone biosynthetic process2.82E-03
68GO:0045038: protein import into chloroplast thylakoid membrane2.82E-03
69GO:0043097: pyrimidine nucleoside salvage2.82E-03
70GO:0016123: xanthophyll biosynthetic process2.82E-03
71GO:0034220: ion transmembrane transport2.93E-03
72GO:0045489: pectin biosynthetic process3.16E-03
73GO:0010190: cytochrome b6f complex assembly3.49E-03
74GO:0006206: pyrimidine nucleobase metabolic process3.49E-03
75GO:0032973: amino acid export3.49E-03
76GO:0018258: protein O-linked glycosylation via hydroxyproline3.49E-03
77GO:0010405: arabinogalactan protein metabolic process3.49E-03
78GO:0042549: photosystem II stabilization3.49E-03
79GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.49E-03
80GO:0042372: phylloquinone biosynthetic process4.20E-03
81GO:0010067: procambium histogenesis4.20E-03
82GO:0017148: negative regulation of translation4.20E-03
83GO:0006694: steroid biosynthetic process4.20E-03
84GO:1901259: chloroplast rRNA processing4.20E-03
85GO:0010189: vitamin E biosynthetic process4.20E-03
86GO:0009854: oxidative photosynthetic carbon pathway4.20E-03
87GO:0010019: chloroplast-nucleus signaling pathway4.20E-03
88GO:0009955: adaxial/abaxial pattern specification4.20E-03
89GO:0010090: trichome morphogenesis4.44E-03
90GO:0006400: tRNA modification4.95E-03
91GO:0009395: phospholipid catabolic process4.95E-03
92GO:0043090: amino acid import4.95E-03
93GO:0030497: fatty acid elongation4.95E-03
94GO:0007267: cell-cell signaling5.01E-03
95GO:0010027: thylakoid membrane organization5.63E-03
96GO:0015979: photosynthesis5.74E-03
97GO:0009819: drought recovery5.76E-03
98GO:2000070: regulation of response to water deprivation5.76E-03
99GO:0007155: cell adhesion5.76E-03
100GO:0042128: nitrate assimilation6.29E-03
101GO:0007186: G-protein coupled receptor signaling pathway6.60E-03
102GO:0009808: lignin metabolic process6.60E-03
103GO:0009932: cell tip growth6.60E-03
104GO:0006002: fructose 6-phosphate metabolic process6.60E-03
105GO:0015996: chlorophyll catabolic process6.60E-03
106GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.60E-03
107GO:0030244: cellulose biosynthetic process7.35E-03
108GO:0010206: photosystem II repair7.48E-03
109GO:0006098: pentose-phosphate shunt7.48E-03
110GO:0080144: amino acid homeostasis7.48E-03
111GO:0045337: farnesyl diphosphate biosynthetic process7.48E-03
112GO:0033384: geranyl diphosphate biosynthetic process7.48E-03
113GO:0006754: ATP biosynthetic process7.48E-03
114GO:0000902: cell morphogenesis7.48E-03
115GO:0090305: nucleic acid phosphodiester bond hydrolysis7.48E-03
116GO:0000160: phosphorelay signal transduction system7.73E-03
117GO:0042761: very long-chain fatty acid biosynthetic process8.41E-03
118GO:0016051: carbohydrate biosynthetic process9.33E-03
119GO:0009870: defense response signaling pathway, resistance gene-dependent9.37E-03
120GO:0019538: protein metabolic process9.37E-03
121GO:0043069: negative regulation of programmed cell death9.37E-03
122GO:0009089: lysine biosynthetic process via diaminopimelate1.04E-02
123GO:0006816: calcium ion transport1.04E-02
124GO:0000272: polysaccharide catabolic process1.04E-02
125GO:0006415: translational termination1.04E-02
126GO:0019684: photosynthesis, light reaction1.04E-02
127GO:0045037: protein import into chloroplast stroma1.14E-02
128GO:0009725: response to hormone1.25E-02
129GO:0005986: sucrose biosynthetic process1.25E-02
130GO:0019253: reductive pentose-phosphate cycle1.36E-02
131GO:0010223: secondary shoot formation1.36E-02
132GO:0010167: response to nitrate1.48E-02
133GO:0070588: calcium ion transmembrane transport1.48E-02
134GO:0006636: unsaturated fatty acid biosynthetic process1.60E-02
135GO:0009833: plant-type primary cell wall biogenesis1.60E-02
136GO:0006071: glycerol metabolic process1.60E-02
137GO:0009736: cytokinin-activated signaling pathway1.63E-02
138GO:0009116: nucleoside metabolic process1.72E-02
139GO:0006418: tRNA aminoacylation for protein translation1.84E-02
140GO:0010026: trichome differentiation1.84E-02
141GO:0008299: isoprenoid biosynthetic process1.84E-02
142GO:0006096: glycolytic process1.93E-02
143GO:0061077: chaperone-mediated protein folding1.97E-02
144GO:0080092: regulation of pollen tube growth2.10E-02
145GO:0030245: cellulose catabolic process2.10E-02
146GO:0009294: DNA mediated transformation2.23E-02
147GO:0040007: growth2.23E-02
148GO:0001944: vasculature development2.23E-02
149GO:0010089: xylem development2.37E-02
150GO:0010214: seed coat development2.37E-02
151GO:0000271: polysaccharide biosynthetic process2.65E-02
152GO:0000413: protein peptidyl-prolyl isomerization2.65E-02
153GO:0010087: phloem or xylem histogenesis2.65E-02
154GO:0042631: cellular response to water deprivation2.65E-02
155GO:0006869: lipid transport2.77E-02
156GO:0010182: sugar mediated signaling pathway2.80E-02
157GO:0008360: regulation of cell shape2.80E-02
158GO:0055085: transmembrane transport2.86E-02
159GO:0007018: microtubule-based movement2.95E-02
160GO:0019252: starch biosynthetic process3.10E-02
161GO:0009793: embryo development ending in seed dormancy3.23E-02
162GO:0000302: response to reactive oxygen species3.25E-02
163GO:0016132: brassinosteroid biosynthetic process3.25E-02
164GO:0009409: response to cold3.28E-02
165GO:0032502: developmental process3.41E-02
166GO:0007264: small GTPase mediated signal transduction3.41E-02
167GO:1901657: glycosyl compound metabolic process3.57E-02
168GO:0006413: translational initiation3.74E-02
169GO:0071805: potassium ion transmembrane transport3.89E-02
170GO:0016126: sterol biosynthetic process4.23E-02
171GO:0009607: response to biotic stimulus4.40E-02
172GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.40E-02
173GO:0010411: xyloglucan metabolic process4.75E-02
RankGO TermAdjusted P value
1GO:0008887: glycerate kinase activity0.00E+00
2GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
3GO:0050613: delta14-sterol reductase activity0.00E+00
4GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
5GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
6GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
9GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
10GO:0046905: phytoene synthase activity0.00E+00
11GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
12GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
13GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
14GO:0050614: delta24-sterol reductase activity0.00E+00
15GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
16GO:0004148: dihydrolipoyl dehydrogenase activity1.69E-05
17GO:0019843: rRNA binding1.79E-04
18GO:0008568: microtubule-severing ATPase activity3.24E-04
19GO:0080132: fatty acid alpha-hydroxylase activity3.24E-04
20GO:0004831: tyrosine-tRNA ligase activity3.24E-04
21GO:0051996: squalene synthase activity3.24E-04
22GO:0010313: phytochrome binding3.24E-04
23GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.24E-04
24GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.24E-04
25GO:0010489: UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity3.24E-04
26GO:0010490: UDP-4-keto-rhamnose-4-keto-reductase activity3.24E-04
27GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.07E-04
28GO:0050377: UDP-glucose 4,6-dehydratase activity7.07E-04
29GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.07E-04
30GO:0008967: phosphoglycolate phosphatase activity7.07E-04
31GO:0042389: omega-3 fatty acid desaturase activity7.07E-04
32GO:0010297: heteropolysaccharide binding7.07E-04
33GO:0008460: dTDP-glucose 4,6-dehydratase activity7.07E-04
34GO:0004617: phosphoglycerate dehydrogenase activity7.07E-04
35GO:0004047: aminomethyltransferase activity7.07E-04
36GO:0010280: UDP-L-rhamnose synthase activity7.07E-04
37GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.07E-04
38GO:0004565: beta-galactosidase activity1.03E-03
39GO:0031072: heat shock protein binding1.03E-03
40GO:0004075: biotin carboxylase activity1.15E-03
41GO:0030267: glyoxylate reductase (NADP) activity1.15E-03
42GO:0003979: UDP-glucose 6-dehydrogenase activity1.15E-03
43GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.44E-03
44GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.44E-03
45GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.44E-03
46GO:0048027: mRNA 5'-UTR binding1.65E-03
47GO:0016149: translation release factor activity, codon specific1.65E-03
48GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.65E-03
49GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.65E-03
50GO:0004375: glycine dehydrogenase (decarboxylating) activity1.65E-03
51GO:0003924: GTPase activity2.13E-03
52GO:1990137: plant seed peroxidase activity2.21E-03
53GO:0004845: uracil phosphoribosyltransferase activity2.21E-03
54GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.21E-03
55GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.21E-03
56GO:0003824: catalytic activity2.53E-03
57GO:0016773: phosphotransferase activity, alcohol group as acceptor2.82E-03
58GO:0004356: glutamate-ammonia ligase activity2.82E-03
59GO:0003989: acetyl-CoA carboxylase activity2.82E-03
60GO:0009922: fatty acid elongase activity2.82E-03
61GO:0016208: AMP binding3.49E-03
62GO:0004130: cytochrome-c peroxidase activity3.49E-03
63GO:0016688: L-ascorbate peroxidase activity3.49E-03
64GO:0042578: phosphoric ester hydrolase activity3.49E-03
65GO:1990714: hydroxyproline O-galactosyltransferase activity3.49E-03
66GO:0004332: fructose-bisphosphate aldolase activity3.49E-03
67GO:0004518: nuclease activity4.16E-03
68GO:0051753: mannan synthase activity4.20E-03
69GO:0004849: uridine kinase activity4.20E-03
70GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.20E-03
71GO:0051920: peroxiredoxin activity4.20E-03
72GO:0005525: GTP binding4.33E-03
73GO:0000156: phosphorelay response regulator activity4.44E-03
74GO:0016759: cellulose synthase activity4.72E-03
75GO:0016722: oxidoreductase activity, oxidizing metal ions5.01E-03
76GO:0005200: structural constituent of cytoskeleton5.01E-03
77GO:0015250: water channel activity5.63E-03
78GO:0004033: aldo-keto reductase (NADP) activity5.76E-03
79GO:0016209: antioxidant activity5.76E-03
80GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.60E-03
81GO:0003843: 1,3-beta-D-glucan synthase activity6.60E-03
82GO:0008889: glycerophosphodiester phosphodiesterase activity7.48E-03
83GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.48E-03
84GO:0003747: translation release factor activity7.48E-03
85GO:0004337: geranyltranstransferase activity7.48E-03
86GO:0004222: metalloendopeptidase activity8.11E-03
87GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds9.46E-03
88GO:0005089: Rho guanyl-nucleotide exchange factor activity1.04E-02
89GO:0047372: acylglycerol lipase activity1.04E-02
90GO:0004161: dimethylallyltranstransferase activity1.04E-02
91GO:0051539: 4 iron, 4 sulfur cluster binding1.06E-02
92GO:0004089: carbonate dehydratase activity1.25E-02
93GO:0005262: calcium channel activity1.25E-02
94GO:0051537: 2 iron, 2 sulfur cluster binding1.31E-02
95GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.36E-02
96GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.41E-02
97GO:0051287: NAD binding1.46E-02
98GO:0016887: ATPase activity1.64E-02
99GO:0005528: FK506 binding1.72E-02
100GO:0015079: potassium ion transmembrane transporter activity1.84E-02
101GO:0004176: ATP-dependent peptidase activity1.97E-02
102GO:0033612: receptor serine/threonine kinase binding1.97E-02
103GO:0019706: protein-cysteine S-palmitoyltransferase activity1.97E-02
104GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.10E-02
105GO:0004650: polygalacturonase activity2.12E-02
106GO:0030570: pectate lyase activity2.23E-02
107GO:0008810: cellulase activity2.23E-02
108GO:0016760: cellulose synthase (UDP-forming) activity2.23E-02
109GO:0051082: unfolded protein binding2.32E-02
110GO:0008514: organic anion transmembrane transporter activity2.37E-02
111GO:0004812: aminoacyl-tRNA ligase activity2.51E-02
112GO:0005102: receptor binding2.51E-02
113GO:0016757: transferase activity, transferring glycosyl groups2.81E-02
114GO:0016758: transferase activity, transferring hexosyl groups2.83E-02
115GO:0050662: coenzyme binding2.95E-02
116GO:0004872: receptor activity3.10E-02
117GO:0030246: carbohydrate binding3.12E-02
118GO:0016762: xyloglucan:xyloglucosyl transferase activity3.25E-02
119GO:0048038: quinone binding3.25E-02
120GO:0008483: transaminase activity3.89E-02
121GO:0008237: metallopeptidase activity3.89E-02
122GO:0016597: amino acid binding4.06E-02
123GO:0008017: microtubule binding4.19E-02
124GO:0003743: translation initiation factor activity4.67E-02
125GO:0102483: scopolin beta-glucosidase activity4.75E-02
126GO:0016798: hydrolase activity, acting on glycosyl bonds4.75E-02
127GO:0008289: lipid binding4.80E-02
128GO:0008236: serine-type peptidase activity4.92E-02
129GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.92E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast2.82E-25
2GO:0009570: chloroplast stroma2.51E-15
3GO:0009941: chloroplast envelope3.47E-15
4GO:0009535: chloroplast thylakoid membrane8.38E-11
5GO:0048046: apoplast6.08E-10
6GO:0009579: thylakoid5.55E-09
7GO:0046658: anchored component of plasma membrane6.45E-08
8GO:0031225: anchored component of membrane2.44E-07
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.94E-07
10GO:0031977: thylakoid lumen1.18E-06
11GO:0009543: chloroplast thylakoid lumen1.50E-06
12GO:0009534: chloroplast thylakoid4.77E-06
13GO:0009654: photosystem II oxygen evolving complex1.50E-04
14GO:0009505: plant-type cell wall3.38E-04
15GO:0016020: membrane4.92E-04
16GO:0045298: tubulin complex5.01E-04
17GO:0005886: plasma membrane5.75E-04
18GO:0042170: plastid membrane7.07E-04
19GO:0000427: plastid-encoded plastid RNA polymerase complex7.07E-04
20GO:0005618: cell wall1.03E-03
21GO:0009528: plastid inner membrane1.15E-03
22GO:0030095: chloroplast photosystem II1.16E-03
23GO:0005960: glycine cleavage complex1.65E-03
24GO:0009532: plastid stroma1.93E-03
25GO:0009527: plastid outer membrane2.21E-03
26GO:0019898: extrinsic component of membrane3.64E-03
27GO:0000139: Golgi membrane4.00E-03
28GO:0009706: chloroplast inner membrane4.28E-03
29GO:0005874: microtubule4.45E-03
30GO:0031969: chloroplast membrane4.69E-03
31GO:0005794: Golgi apparatus4.72E-03
32GO:0010319: stromule5.01E-03
33GO:0010287: plastoglobule5.32E-03
34GO:0022626: cytosolic ribosome5.39E-03
35GO:0009539: photosystem II reaction center6.60E-03
36GO:0000148: 1,3-beta-D-glucan synthase complex6.60E-03
37GO:0005811: lipid particle6.60E-03
38GO:0005840: ribosome7.14E-03
39GO:0005763: mitochondrial small ribosomal subunit7.48E-03
40GO:0015934: large ribosomal subunit8.51E-03
41GO:0016324: apical plasma membrane9.37E-03
42GO:0055028: cortical microtubule9.37E-03
43GO:0009536: plastid9.70E-03
44GO:0005802: trans-Golgi network1.32E-02
45GO:0030659: cytoplasmic vesicle membrane1.36E-02
46GO:0016021: integral component of membrane1.44E-02
47GO:0030176: integral component of endoplasmic reticulum membrane1.48E-02
48GO:0005768: endosome1.65E-02
49GO:0042651: thylakoid membrane1.84E-02
50GO:0005576: extracellular region2.31E-02
51GO:0005871: kinesin complex2.51E-02
52GO:0009523: photosystem II3.10E-02
53GO:0009506: plasmodesma3.12E-02
54GO:0005773: vacuole3.13E-02
55GO:0005759: mitochondrial matrix3.65E-02
56GO:0005778: peroxisomal membrane3.89E-02
57GO:0005887: integral component of plasma membrane4.66E-02
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Gene type



Gene DE type