Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G01440

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042820: vitamin B6 catabolic process0.00E+00
2GO:0042821: pyridoxal biosynthetic process0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
5GO:0009106: lipoate metabolic process0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0009249: protein lipoylation0.00E+00
8GO:0009658: chloroplast organization3.50E-08
9GO:0019464: glycine decarboxylation via glycine cleavage system3.07E-07
10GO:0009773: photosynthetic electron transport in photosystem I4.88E-07
11GO:0019253: reductive pentose-phosphate cycle1.24E-06
12GO:0010275: NAD(P)H dehydrogenase complex assembly3.24E-06
13GO:0071482: cellular response to light stimulus8.38E-06
14GO:0016117: carotenoid biosynthetic process8.90E-06
15GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.63E-05
16GO:0018119: peptidyl-cysteine S-nitrosylation2.65E-05
17GO:0006546: glycine catabolic process4.76E-05
18GO:0009902: chloroplast relocation4.76E-05
19GO:0006810: transport5.24E-05
20GO:0016123: xanthophyll biosynthetic process7.56E-05
21GO:0009853: photorespiration1.06E-04
22GO:0042026: protein refolding1.51E-04
23GO:0009409: response to cold1.77E-04
24GO:0048564: photosystem I assembly2.52E-04
25GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.65E-04
26GO:0010362: negative regulation of anion channel activity by blue light2.65E-04
27GO:0009443: pyridoxal 5'-phosphate salvage2.65E-04
28GO:0006438: valyl-tRNA aminoacylation2.65E-04
29GO:0010480: microsporocyte differentiation2.65E-04
30GO:0006659: phosphatidylserine biosynthetic process2.65E-04
31GO:0000023: maltose metabolic process2.65E-04
32GO:0046686: response to cadmium ion2.68E-04
33GO:0009629: response to gravity5.83E-04
34GO:0007154: cell communication5.83E-04
35GO:0080183: response to photooxidative stress5.83E-04
36GO:0030388: fructose 1,6-bisphosphate metabolic process5.83E-04
37GO:0006352: DNA-templated transcription, initiation5.99E-04
38GO:0018298: protein-chromophore linkage6.98E-04
39GO:0009735: response to cytokinin7.53E-04
40GO:0010207: photosystem II assembly8.73E-04
41GO:0010020: chloroplast fission8.73E-04
42GO:0031022: nuclear migration along microfilament9.47E-04
43GO:0006000: fructose metabolic process9.47E-04
44GO:0006518: peptide metabolic process9.47E-04
45GO:0006696: ergosterol biosynthetic process9.47E-04
46GO:0090506: axillary shoot meristem initiation9.47E-04
47GO:0000913: preprophase band assembly9.47E-04
48GO:0090351: seedling development9.75E-04
49GO:0007623: circadian rhythm1.11E-03
50GO:0010239: chloroplast mRNA processing1.35E-03
51GO:0033014: tetrapyrrole biosynthetic process1.35E-03
52GO:0006241: CTP biosynthetic process1.35E-03
53GO:0010731: protein glutathionylation1.35E-03
54GO:0006165: nucleoside diphosphate phosphorylation1.35E-03
55GO:0006228: UTP biosynthetic process1.35E-03
56GO:0043572: plastid fission1.35E-03
57GO:0016556: mRNA modification1.35E-03
58GO:2001141: regulation of RNA biosynthetic process1.35E-03
59GO:0051085: chaperone mediated protein folding requiring cofactor1.35E-03
60GO:0061077: chaperone-mediated protein folding1.44E-03
61GO:0006730: one-carbon metabolic process1.58E-03
62GO:0080092: regulation of pollen tube growth1.58E-03
63GO:0009765: photosynthesis, light harvesting1.81E-03
64GO:2000122: negative regulation of stomatal complex development1.81E-03
65GO:0006183: GTP biosynthetic process1.81E-03
66GO:0045727: positive regulation of translation1.81E-03
67GO:0006021: inositol biosynthetic process1.81E-03
68GO:0071483: cellular response to blue light1.81E-03
69GO:0010037: response to carbon dioxide1.81E-03
70GO:0006542: glutamine biosynthetic process1.81E-03
71GO:0019676: ammonia assimilation cycle1.81E-03
72GO:0015976: carbon utilization1.81E-03
73GO:0042631: cellular response to water deprivation2.19E-03
74GO:0009904: chloroplast accumulation movement2.31E-03
75GO:0016120: carotene biosynthetic process2.31E-03
76GO:0010236: plastoquinone biosynthetic process2.31E-03
77GO:0006544: glycine metabolic process2.31E-03
78GO:0043097: pyrimidine nucleoside salvage2.31E-03
79GO:0009107: lipoate biosynthetic process2.31E-03
80GO:1902183: regulation of shoot apical meristem development2.31E-03
81GO:0009791: post-embryonic development2.71E-03
82GO:0070814: hydrogen sulfide biosynthetic process2.85E-03
83GO:0010190: cytochrome b6f complex assembly2.85E-03
84GO:0006206: pyrimidine nucleobase metabolic process2.85E-03
85GO:0006563: L-serine metabolic process2.85E-03
86GO:0042549: photosystem II stabilization2.85E-03
87GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.85E-03
88GO:0007264: small GTPase mediated signal transduction3.10E-03
89GO:0006458: 'de novo' protein folding3.43E-03
90GO:0010067: procambium histogenesis3.43E-03
91GO:0009903: chloroplast avoidance movement3.43E-03
92GO:0009854: oxidative photosynthetic carbon pathway3.43E-03
93GO:0048437: floral organ development4.04E-03
94GO:0009645: response to low light intensity stimulus4.04E-03
95GO:0008610: lipid biosynthetic process4.69E-03
96GO:0009704: de-etiolation4.69E-03
97GO:0016559: peroxisome fission4.69E-03
98GO:0006002: fructose 6-phosphate metabolic process5.37E-03
99GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.37E-03
100GO:0010100: negative regulation of photomorphogenesis5.37E-03
101GO:0009657: plastid organization5.37E-03
102GO:0032544: plastid translation5.37E-03
103GO:0017004: cytochrome complex assembly5.37E-03
104GO:2000024: regulation of leaf development6.09E-03
105GO:0006783: heme biosynthetic process6.09E-03
106GO:0000902: cell morphogenesis6.09E-03
107GO:0009638: phototropism6.83E-03
108GO:0006779: porphyrin-containing compound biosynthetic process6.83E-03
109GO:0035999: tetrahydrofolate interconversion6.83E-03
110GO:1900865: chloroplast RNA modification6.83E-03
111GO:0009970: cellular response to sulfate starvation7.61E-03
112GO:0006535: cysteine biosynthetic process from serine7.61E-03
113GO:0000103: sulfate assimilation7.61E-03
114GO:0010192: mucilage biosynthetic process7.61E-03
115GO:0000272: polysaccharide catabolic process8.42E-03
116GO:0006415: translational termination8.42E-03
117GO:0048229: gametophyte development8.42E-03
118GO:0009744: response to sucrose8.94E-03
119GO:0005983: starch catabolic process9.26E-03
120GO:0045037: protein import into chloroplast stroma9.26E-03
121GO:0009636: response to toxic substance1.01E-02
122GO:0006006: glucose metabolic process1.01E-02
123GO:0010075: regulation of meristem growth1.01E-02
124GO:0006094: gluconeogenesis1.01E-02
125GO:0009767: photosynthetic electron transport chain1.01E-02
126GO:0005986: sucrose biosynthetic process1.01E-02
127GO:0055114: oxidation-reduction process1.03E-02
128GO:0010223: secondary shoot formation1.10E-02
129GO:0009934: regulation of meristem structural organization1.10E-02
130GO:0007031: peroxisome organization1.20E-02
131GO:0042343: indole glucosinolate metabolic process1.20E-02
132GO:0006636: unsaturated fatty acid biosynthetic process1.29E-02
133GO:0009833: plant-type primary cell wall biogenesis1.29E-02
134GO:0009416: response to light stimulus1.29E-02
135GO:0009944: polarity specification of adaxial/abaxial axis1.39E-02
136GO:0019344: cysteine biosynthetic process1.39E-02
137GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.41E-02
138GO:0006096: glycolytic process1.43E-02
139GO:0046777: protein autophosphorylation1.47E-02
140GO:0016575: histone deacetylation1.49E-02
141GO:0006418: tRNA aminoacylation for protein translation1.49E-02
142GO:0009768: photosynthesis, light harvesting in photosystem I1.49E-02
143GO:0007017: microtubule-based process1.49E-02
144GO:0098542: defense response to other organism1.59E-02
145GO:0015979: photosynthesis1.60E-02
146GO:0016226: iron-sulfur cluster assembly1.70E-02
147GO:0007005: mitochondrion organization1.70E-02
148GO:0010082: regulation of root meristem growth1.81E-02
149GO:0001944: vasculature development1.81E-02
150GO:0009793: embryo development ending in seed dormancy1.85E-02
151GO:0010089: xylem development1.92E-02
152GO:0010087: phloem or xylem histogenesis2.15E-02
153GO:0010118: stomatal movement2.15E-02
154GO:0048653: anther development2.15E-02
155GO:0008360: regulation of cell shape2.26E-02
156GO:0007018: microtubule-based movement2.38E-02
157GO:0006814: sodium ion transport2.38E-02
158GO:0007059: chromosome segregation2.38E-02
159GO:0005975: carbohydrate metabolic process2.41E-02
160GO:0019252: starch biosynthetic process2.51E-02
161GO:0008654: phospholipid biosynthetic process2.51E-02
162GO:0080156: mitochondrial mRNA modification2.63E-02
163GO:0006633: fatty acid biosynthetic process2.72E-02
164GO:0010583: response to cyclopentenone2.76E-02
165GO:0016032: viral process2.76E-02
166GO:0010090: trichome morphogenesis2.88E-02
167GO:1901657: glycosyl compound metabolic process2.88E-02
168GO:0010286: heat acclimation3.15E-02
169GO:0000910: cytokinesis3.28E-02
170GO:0051607: defense response to virus3.28E-02
171GO:0009607: response to biotic stimulus3.56E-02
172GO:0042742: defense response to bacterium3.66E-02
173GO:0009627: systemic acquired resistance3.70E-02
174GO:0042128: nitrate assimilation3.70E-02
175GO:0048481: plant ovule development4.13E-02
176GO:0009817: defense response to fungus, incompatible interaction4.13E-02
177GO:0030244: cellulose biosynthetic process4.13E-02
178GO:0008219: cell death4.13E-02
179GO:0009832: plant-type cell wall biogenesis4.28E-02
180GO:0000160: phosphorelay signal transduction system4.28E-02
181GO:0009407: toxin catabolic process4.43E-02
182GO:0010119: regulation of stomatal movement4.58E-02
183GO:0007568: aging4.58E-02
184GO:0016051: carbohydrate biosynthetic process4.88E-02
185GO:0009637: response to blue light4.88E-02
RankGO TermAdjusted P value
1GO:0005363: maltose transmembrane transporter activity0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0043014: alpha-tubulin binding0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0008974: phosphoribulokinase activity0.00E+00
8GO:0042903: tubulin deacetylase activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0046905: phytoene synthase activity0.00E+00
11GO:0008465: glycerate dehydrogenase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
14GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
15GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
16GO:0004326: tetrahydrofolylpolyglutamate synthase activity3.24E-06
17GO:0004375: glycine dehydrogenase (decarboxylating) activity2.63E-05
18GO:0016987: sigma factor activity4.76E-05
19GO:0001053: plastid sigma factor activity4.76E-05
20GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.76E-05
21GO:0004222: metalloendopeptidase activity8.18E-05
22GO:0004723: calcium-dependent protein serine/threonine phosphatase activity1.51E-04
23GO:0004033: aldo-keto reductase (NADP) activity2.52E-04
24GO:0003867: 4-aminobutyrate transaminase activity2.65E-04
25GO:0004325: ferrochelatase activity2.65E-04
26GO:0004832: valine-tRNA ligase activity2.65E-04
27GO:0051996: squalene synthase activity2.65E-04
28GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.83E-04
29GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.83E-04
30GO:0004512: inositol-3-phosphate synthase activity5.83E-04
31GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.83E-04
32GO:0008967: phosphoglycolate phosphatase activity5.83E-04
33GO:0050017: L-3-cyanoalanine synthase activity5.83E-04
34GO:0010291: carotene beta-ring hydroxylase activity5.83E-04
35GO:0017118: lipoyltransferase activity5.83E-04
36GO:0042389: omega-3 fatty acid desaturase activity5.83E-04
37GO:0004618: phosphoglycerate kinase activity5.83E-04
38GO:0010297: heteropolysaccharide binding5.83E-04
39GO:0016415: octanoyltransferase activity5.83E-04
40GO:0004047: aminomethyltransferase activity5.83E-04
41GO:0005089: Rho guanyl-nucleotide exchange factor activity5.99E-04
42GO:0044183: protein binding involved in protein folding5.99E-04
43GO:0008266: poly(U) RNA binding8.73E-04
44GO:0070330: aromatase activity9.47E-04
45GO:0003913: DNA photolyase activity9.47E-04
46GO:0032947: protein complex scaffold9.47E-04
47GO:0004148: dihydrolipoyl dehydrogenase activity9.47E-04
48GO:0004781: sulfate adenylyltransferase (ATP) activity9.47E-04
49GO:0070402: NADPH binding9.47E-04
50GO:0005528: FK506 binding1.20E-03
51GO:0048487: beta-tubulin binding1.35E-03
52GO:0016149: translation release factor activity, codon specific1.35E-03
53GO:0004550: nucleoside diphosphate kinase activity1.35E-03
54GO:0009882: blue light photoreceptor activity1.35E-03
55GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.35E-03
56GO:0008508: bile acid:sodium symporter activity1.35E-03
57GO:0033612: receptor serine/threonine kinase binding1.44E-03
58GO:0005198: structural molecule activity1.49E-03
59GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.81E-03
60GO:0005515: protein binding2.23E-03
61GO:0008374: O-acyltransferase activity2.31E-03
62GO:0004372: glycine hydroxymethyltransferase activity2.31E-03
63GO:0018685: alkane 1-monooxygenase activity2.31E-03
64GO:0004356: glutamate-ammonia ligase activity2.31E-03
65GO:0042578: phosphoric ester hydrolase activity2.85E-03
66GO:0080030: methyl indole-3-acetate esterase activity2.85E-03
67GO:0048038: quinone binding2.90E-03
68GO:0051082: unfolded protein binding2.93E-03
69GO:0004849: uridine kinase activity3.43E-03
70GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.43E-03
71GO:0004124: cysteine synthase activity3.43E-03
72GO:0016759: cellulose synthase activity3.51E-03
73GO:0008237: metallopeptidase activity3.73E-03
74GO:0009881: photoreceptor activity4.04E-03
75GO:0043295: glutathione binding4.04E-03
76GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.37E-03
77GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.37E-03
78GO:0008135: translation factor activity, RNA binding5.37E-03
79GO:0003843: 1,3-beta-D-glucan synthase activity5.37E-03
80GO:0003924: GTPase activity5.39E-03
81GO:0003747: translation release factor activity6.09E-03
82GO:0042802: identical protein binding7.98E-03
83GO:0005525: GTP binding8.25E-03
84GO:0015386: potassium:proton antiporter activity8.42E-03
85GO:0004364: glutathione transferase activity8.58E-03
86GO:0043621: protein self-association9.68E-03
87GO:0051537: 2 iron, 2 sulfur cluster binding9.68E-03
88GO:0004565: beta-galactosidase activity1.01E-02
89GO:0004089: carbonate dehydratase activity1.01E-02
90GO:0031072: heat shock protein binding1.01E-02
91GO:0000155: phosphorelay sensor kinase activity1.01E-02
92GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.04E-02
93GO:0051287: NAD binding1.08E-02
94GO:0005524: ATP binding1.09E-02
95GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.21E-02
96GO:0031409: pigment binding1.29E-02
97GO:0004407: histone deacetylase activity1.39E-02
98GO:0051536: iron-sulfur cluster binding1.39E-02
99GO:0043424: protein histidine kinase binding1.49E-02
100GO:0015079: potassium ion transmembrane transporter activity1.49E-02
101GO:0004176: ATP-dependent peptidase activity1.59E-02
102GO:0016760: cellulose synthase (UDP-forming) activity1.81E-02
103GO:0003756: protein disulfide isomerase activity1.92E-02
104GO:0005102: receptor binding2.03E-02
105GO:0004812: aminoacyl-tRNA ligase activity2.03E-02
106GO:0019843: rRNA binding2.16E-02
107GO:0019825: oxygen binding2.18E-02
108GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.22E-02
109GO:0050662: coenzyme binding2.38E-02
110GO:0010181: FMN binding2.38E-02
111GO:0030170: pyridoxal phosphate binding2.40E-02
112GO:0004519: endonuclease activity2.45E-02
113GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.88E-02
114GO:0008483: transaminase activity3.15E-02
115GO:0005200: structural constituent of cytoskeleton3.15E-02
116GO:0005509: calcium ion binding3.26E-02
117GO:0016597: amino acid binding3.28E-02
118GO:0016168: chlorophyll binding3.56E-02
119GO:0005506: iron ion binding3.58E-02
120GO:0009931: calcium-dependent protein serine/threonine kinase activity3.70E-02
121GO:0102483: scopolin beta-glucosidase activity3.84E-02
122GO:0004683: calmodulin-dependent protein kinase activity3.84E-02
123GO:0003824: catalytic activity4.19E-02
124GO:0050897: cobalt ion binding4.58E-02
125GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.58E-02
126GO:0003746: translation elongation factor activity4.88E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009507: chloroplast7.84E-46
3GO:0009535: chloroplast thylakoid membrane4.16E-23
4GO:0009941: chloroplast envelope5.98E-20
5GO:0009570: chloroplast stroma4.68E-16
6GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.36E-12
7GO:0010319: stromule8.10E-10
8GO:0009579: thylakoid1.12E-08
9GO:0031969: chloroplast membrane1.26E-06
10GO:0048046: apoplast4.70E-06
11GO:0009543: chloroplast thylakoid lumen8.73E-06
12GO:0009534: chloroplast thylakoid1.06E-05
13GO:0005960: glycine cleavage complex2.63E-05
14GO:0009706: chloroplast inner membrane5.94E-05
15GO:0009654: photosystem II oxygen evolving complex9.78E-05
16GO:0009782: photosystem I antenna complex2.65E-04
17GO:0009344: nitrite reductase complex [NAD(P)H]2.65E-04
18GO:0042170: plastid membrane5.83E-04
19GO:0000427: plastid-encoded plastid RNA polymerase complex5.83E-04
20GO:0010287: plastoglobule6.29E-04
21GO:0030095: chloroplast photosystem II8.73E-04
22GO:0005819: spindle1.05E-03
23GO:0042651: thylakoid membrane1.32E-03
24GO:0055035: plastid thylakoid membrane2.31E-03
25GO:0019898: extrinsic component of membrane2.71E-03
26GO:0016020: membrane3.07E-03
27GO:0005623: cell4.04E-03
28GO:0005759: mitochondrial matrix5.22E-03
29GO:0005779: integral component of peroxisomal membrane5.37E-03
30GO:0009539: photosystem II reaction center5.37E-03
31GO:0000148: 1,3-beta-D-glucan synthase complex5.37E-03
32GO:0009707: chloroplast outer membrane5.46E-03
33GO:0045298: tubulin complex6.09E-03
34GO:0016324: apical plasma membrane7.61E-03
35GO:0005765: lysosomal membrane8.42E-03
36GO:0000311: plastid large ribosomal subunit9.26E-03
37GO:0009508: plastid chromosome1.01E-02
38GO:0022626: cytosolic ribosome1.20E-02
39GO:0030076: light-harvesting complex1.20E-02
40GO:0005874: microtubule1.29E-02
41GO:0005758: mitochondrial intermembrane space1.39E-02
42GO:0009532: plastid stroma1.59E-02
43GO:0009536: plastid1.68E-02
44GO:0005871: kinesin complex2.03E-02
45GO:0009524: phragmoplast2.28E-02
46GO:0009504: cell plate2.51E-02
47GO:0009523: photosystem II2.51E-02
48GO:0005694: chromosome2.76E-02
49GO:0009295: nucleoid3.15E-02
50GO:0005778: peroxisomal membrane3.15E-02
51GO:0016021: integral component of membrane3.61E-02
52GO:0015934: large ribosomal subunit4.58E-02
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Gene type



Gene DE type