co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G01370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
2	GO:0017038: protein import	0.00E+00
3	GO:0010207: photosystem II assembly	9.16E-06
4	GO:0034337: RNA folding	1.13E-05
5	GO:0018026: peptidyl-lysine monomethylation	3.00E-05
6	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.00E-05
7	GO:0035304: regulation of protein dephosphorylation	3.00E-05
8	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	5.40E-05
9	GO:0009052: pentose-phosphate shunt, non-oxidative branch	8.23E-05
10	GO:0010109: regulation of photosynthesis	1.14E-04
11	GO:0006109: regulation of carbohydrate metabolic process	1.14E-04
12	GO:0045038: protein import into chloroplast thylakoid membrane	1.49E-04
13	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.86E-04
14	GO:0042549: photosystem II stabilization	1.86E-04
15	GO:1901259: chloroplast rRNA processing	2.25E-04
16	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.66E-04
17	GO:0006605: protein targeting	3.08E-04
18	GO:0009642: response to light intensity	3.08E-04
19	GO:0015996: chlorophyll catabolic process	3.52E-04
20	GO:0010205: photoinhibition	4.44E-04
21	GO:0043085: positive regulation of catalytic activity	5.39E-04
22	GO:1903507: negative regulation of nucleic acid-templated transcription	5.39E-04
23	GO:0019684: photosynthesis, light reaction	5.39E-04
24	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.02E-03
25	GO:0016117: carotenoid biosynthetic process	1.20E-03
26	GO:0000413: protein peptidyl-prolyl isomerization	1.26E-03
27	GO:0006662: glycerol ether metabolic process	1.33E-03
28	GO:0009646: response to absence of light	1.39E-03
29	GO:0010090: trichome morphogenesis	1.66E-03
30	GO:0034599: cellular response to oxidative stress	2.80E-03
31	GO:0031347: regulation of defense response	3.68E-03
32	GO:0043086: negative regulation of catalytic activity	4.43E-03
33	GO:0009451: RNA modification	7.46E-03
34	GO:0008380: RNA splicing	8.30E-03
35	GO:0009658: chloroplast organization	9.96E-03
36	GO:0015979: photosynthesis	1.27E-02
37	GO:0045454: cell redox homeostasis	1.32E-02
38	GO:0006886: intracellular protein transport	1.34E-02
39	GO:0006397: mRNA processing	1.57E-02
40	GO:0009611: response to wounding	2.33E-02
41	GO:0006457: protein folding	2.76E-02
42	GO:0055114: oxidation-reduction process	4.23E-02
43	GO:0006810: transport	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0005048: signal sequence binding	0.00E+00
2	GO:0034256: chlorophyll(ide) b reductase activity	1.13E-05
3	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.13E-05
4	GO:0010242: oxygen evolving activity	1.13E-05
5	GO:0004856: xylulokinase activity	1.13E-05
6	GO:0004751: ribose-5-phosphate isomerase activity	5.40E-05
7	GO:0015462: ATPase-coupled protein transmembrane transporter activity	5.40E-05
8	GO:0016279: protein-lysine N-methyltransferase activity	1.14E-04
9	GO:0004045: aminoacyl-tRNA hydrolase activity	1.14E-04
10	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.49E-04
11	GO:0008312: 7S RNA binding	3.08E-04
12	GO:0005525: GTP binding	4.44E-04
13	GO:0008047: enzyme activator activity	4.91E-04
14	GO:0009982: pseudouridine synthase activity	6.40E-04
15	GO:0008266: poly(U) RNA binding	6.92E-04
16	GO:0004857: enzyme inhibitor activity	8.54E-04
17	GO:0003714: transcription corepressor activity	8.54E-04
18	GO:0043424: protein histidine kinase binding	9.08E-04
19	GO:0047134: protein-disulfide reductase activity	1.20E-03
20	GO:0004791: thioredoxin-disulfide reductase activity	1.39E-03
21	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.66E-03
22	GO:0003746: translation elongation factor activity	2.72E-03
23	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.89E-03
24	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.59E-03
25	GO:0005509: calcium ion binding	4.41E-03
26	GO:0015035: protein disulfide oxidoreductase activity	5.13E-03
27	GO:0008026: ATP-dependent helicase activity	5.24E-03
28	GO:0019843: rRNA binding	5.87E-03
29	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.98E-03
30	GO:0003729: mRNA binding	7.10E-03
31	GO:0003723: RNA binding	7.56E-03
32	GO:0003743: translation initiation factor activity	8.18E-03
33	GO:0016788: hydrolase activity, acting on ester bonds	1.01E-02
34	GO:0004497: monooxygenase activity	1.16E-02
35	GO:0003924: GTPase activity	1.53E-02
36	GO:0005515: protein binding	2.63E-02
37	GO:0019825: oxygen binding	2.95E-02
38	GO:0005506: iron ion binding	3.75E-02
39	GO:0005215: transporter activity	4.08E-02
40	GO:0016491: oxidoreductase activity	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.86E-15
2	GO:0009570: chloroplast stroma	5.49E-08
3	GO:0031977: thylakoid lumen	2.37E-06
4	GO:0009543: chloroplast thylakoid lumen	1.23E-05
5	GO:0009654: photosystem II oxygen evolving complex	1.58E-05
6	GO:0009535: chloroplast thylakoid membrane	1.65E-05
7	GO:0009534: chloroplast thylakoid	1.81E-05
8	GO:0080085: signal recognition particle, chloroplast targeting	3.00E-05
9	GO:0019898: extrinsic component of membrane	3.88E-05
10	GO:0009533: chloroplast stromal thylakoid	2.66E-04
11	GO:0009579: thylakoid	2.94E-04
12	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.52E-04
13	GO:0032040: small-subunit processome	5.89E-04
14	GO:0009508: plastid chromosome	6.40E-04
15	GO:0009941: chloroplast envelope	6.66E-04
16	GO:0030095: chloroplast photosystem II	6.92E-04
17	GO:0009295: nucleoid	1.80E-03
18	GO:0030529: intracellular ribonucleoprotein complex	1.95E-03
19	GO:0010287: plastoglobule	5.66E-03
20	GO:0005623: cell	5.98E-03
21	GO:0031969: chloroplast membrane	1.16E-02
22	GO:0005840: ribosome	3.93E-02
23	GO:0009536: plastid	4.39E-02