GO Enrichment Analysis of Co-expressed Genes with
AT3G01060
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1903508: positive regulation of nucleic acid-templated transcription | 0.00E+00 |
| 2 | GO:1903428: positive regulation of reactive oxygen species biosynthetic process | 0.00E+00 |
| 3 | GO:0070584: mitochondrion morphogenesis | 0.00E+00 |
| 4 | GO:0046677: response to antibiotic | 0.00E+00 |
| 5 | GO:0009645: response to low light intensity stimulus | 6.47E-09 |
| 6 | GO:0010114: response to red light | 1.04E-07 |
| 7 | GO:0009644: response to high light intensity | 1.25E-07 |
| 8 | GO:0009768: photosynthesis, light harvesting in photosystem I | 2.54E-07 |
| 9 | GO:0018298: protein-chromophore linkage | 3.47E-06 |
| 10 | GO:0010218: response to far red light | 4.12E-06 |
| 11 | GO:0009637: response to blue light | 5.25E-06 |
| 12 | GO:0009416: response to light stimulus | 4.41E-05 |
| 13 | GO:0050992: dimethylallyl diphosphate biosynthetic process | 4.85E-05 |
| 14 | GO:0090153: regulation of sphingolipid biosynthetic process | 8.61E-05 |
| 15 | GO:0048575: short-day photoperiodism, flowering | 8.61E-05 |
| 16 | GO:1902448: positive regulation of shade avoidance | 8.61E-05 |
| 17 | GO:0015979: photosynthesis | 1.77E-04 |
| 18 | GO:0010023: proanthocyanidin biosynthetic process | 1.78E-04 |
| 19 | GO:0009765: photosynthesis, light harvesting | 1.78E-04 |
| 20 | GO:2000306: positive regulation of photomorphogenesis | 1.78E-04 |
| 21 | GO:0030104: water homeostasis | 1.78E-04 |
| 22 | GO:0016123: xanthophyll biosynthetic process | 2.30E-04 |
| 23 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.85E-04 |
| 24 | GO:0045962: positive regulation of development, heterochronic | 2.85E-04 |
| 25 | GO:0009640: photomorphogenesis | 2.87E-04 |
| 26 | GO:0071470: cellular response to osmotic stress | 3.42E-04 |
| 27 | GO:0009769: photosynthesis, light harvesting in photosystem II | 4.02E-04 |
| 28 | GO:0007186: G-protein coupled receptor signaling pathway | 5.27E-04 |
| 29 | GO:0010100: negative regulation of photomorphogenesis | 5.27E-04 |
| 30 | GO:0090333: regulation of stomatal closure | 5.93E-04 |
| 31 | GO:0009688: abscisic acid biosynthetic process | 7.30E-04 |
| 32 | GO:0007623: circadian rhythm | 9.17E-04 |
| 33 | GO:2000028: regulation of photoperiodism, flowering | 9.49E-04 |
| 34 | GO:0018107: peptidyl-threonine phosphorylation | 9.49E-04 |
| 35 | GO:0009718: anthocyanin-containing compound biosynthetic process | 9.49E-04 |
| 36 | GO:0090351: seedling development | 1.10E-03 |
| 37 | GO:0006874: cellular calcium ion homeostasis | 1.35E-03 |
| 38 | GO:0048511: rhythmic process | 1.44E-03 |
| 39 | GO:0009269: response to desiccation | 1.44E-03 |
| 40 | GO:0010017: red or far-red light signaling pathway | 1.52E-03 |
| 41 | GO:0009723: response to ethylene | 1.60E-03 |
| 42 | GO:0071215: cellular response to abscisic acid stimulus | 1.61E-03 |
| 43 | GO:0080167: response to karrikin | 1.71E-03 |
| 44 | GO:0009409: response to cold | 1.84E-03 |
| 45 | GO:0044550: secondary metabolite biosynthetic process | 1.85E-03 |
| 46 | GO:0006355: regulation of transcription, DNA-templated | 1.90E-03 |
| 47 | GO:0010182: sugar mediated signaling pathway | 1.99E-03 |
| 48 | GO:0006814: sodium ion transport | 2.09E-03 |
| 49 | GO:0006351: transcription, DNA-templated | 2.44E-03 |
| 50 | GO:0015995: chlorophyll biosynthetic process | 3.28E-03 |
| 51 | GO:0048573: photoperiodism, flowering | 3.28E-03 |
| 52 | GO:0006811: ion transport | 3.76E-03 |
| 53 | GO:0006865: amino acid transport | 4.00E-03 |
| 54 | GO:0034599: cellular response to oxidative stress | 4.26E-03 |
| 55 | GO:0009965: leaf morphogenesis | 5.32E-03 |
| 56 | GO:0009651: response to salt stress | 5.78E-03 |
| 57 | GO:0009585: red, far-red light phototransduction | 6.02E-03 |
| 58 | GO:0009624: response to nematode | 7.69E-03 |
| 59 | GO:0018105: peptidyl-serine phosphorylation | 7.85E-03 |
| 60 | GO:0055114: oxidation-reduction process | 8.76E-03 |
| 61 | GO:0009845: seed germination | 9.51E-03 |
| 62 | GO:0010228: vegetative to reproductive phase transition of meristem | 1.16E-02 |
| 63 | GO:0009739: response to gibberellin | 1.22E-02 |
| 64 | GO:0046686: response to cadmium ion | 1.39E-02 |
| 65 | GO:0009658: chloroplast organization | 1.54E-02 |
| 66 | GO:0006970: response to osmotic stress | 1.62E-02 |
| 67 | GO:0048366: leaf development | 1.72E-02 |
| 68 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.83E-02 |
| 69 | GO:0009737: response to abscisic acid | 1.90E-02 |
| 70 | GO:0009751: response to salicylic acid | 2.34E-02 |
| 71 | GO:0006629: lipid metabolic process | 2.36E-02 |
| 72 | GO:0009408: response to heat | 2.36E-02 |
| 73 | GO:0009753: response to jasmonic acid | 2.48E-02 |
| 74 | GO:0008152: metabolic process | 2.53E-02 |
| 75 | GO:0009908: flower development | 3.31E-02 |
| 76 | GO:0009735: response to cytokinin | 3.33E-02 |
| 77 | GO:0009555: pollen development | 3.55E-02 |
| 78 | GO:0035556: intracellular signal transduction | 3.69E-02 |
| 79 | GO:0055085: transmembrane transport | 4.21E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009540: zeaxanthin epoxidase [overall] activity | 0.00E+00 |
| 2 | GO:0030504: inorganic diphosphate transmembrane transporter activity | 0.00E+00 |
| 3 | GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | 0.00E+00 |
| 4 | GO:0031409: pigment binding | 1.74E-07 |
| 5 | GO:0016168: chlorophyll binding | 2.39E-06 |
| 6 | GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | 1.87E-05 |
| 7 | GO:0008158: hedgehog receptor activity | 1.87E-05 |
| 8 | GO:0080045: quercetin 3'-O-glucosyltransferase activity | 4.85E-05 |
| 9 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 8.61E-05 |
| 10 | GO:0004930: G-protein coupled receptor activity | 1.78E-04 |
| 11 | GO:0051538: 3 iron, 4 sulfur cluster binding | 2.30E-04 |
| 12 | GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | 2.30E-04 |
| 13 | GO:0080046: quercetin 4'-O-glucosyltransferase activity | 2.85E-04 |
| 14 | GO:0071949: FAD binding | 5.93E-04 |
| 15 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 6.93E-04 |
| 16 | GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity | 7.30E-04 |
| 17 | GO:0047372: acylglycerol lipase activity | 8.02E-04 |
| 18 | GO:0005315: inorganic phosphate transmembrane transporter activity | 9.49E-04 |
| 19 | GO:0005217: intracellular ligand-gated ion channel activity | 1.10E-03 |
| 20 | GO:0003712: transcription cofactor activity | 1.10E-03 |
| 21 | GO:0004970: ionotropic glutamate receptor activity | 1.10E-03 |
| 22 | GO:0005216: ion channel activity | 1.35E-03 |
| 23 | GO:0008514: organic anion transmembrane transporter activity | 1.70E-03 |
| 24 | GO:0046872: metal ion binding | 3.46E-03 |
| 25 | GO:0051537: 2 iron, 2 sulfur cluster binding | 5.18E-03 |
| 26 | GO:0015293: symporter activity | 5.32E-03 |
| 27 | GO:0015171: amino acid transmembrane transporter activity | 6.46E-03 |
| 28 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 7.22E-03 |
| 29 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 7.22E-03 |
| 30 | GO:0005506: iron ion binding | 8.75E-03 |
| 31 | GO:0015144: carbohydrate transmembrane transporter activity | 1.02E-02 |
| 32 | GO:0003677: DNA binding | 1.03E-02 |
| 33 | GO:0005515: protein binding | 1.09E-02 |
| 34 | GO:0005351: sugar:proton symporter activity | 1.11E-02 |
| 35 | GO:0008194: UDP-glycosyltransferase activity | 1.22E-02 |
| 36 | GO:0004672: protein kinase activity | 1.31E-02 |
| 37 | GO:0042802: identical protein binding | 1.34E-02 |
| 38 | GO:0004497: monooxygenase activity | 1.79E-02 |
| 39 | GO:0016787: hydrolase activity | 1.91E-02 |
| 40 | GO:0004871: signal transducer activity | 2.10E-02 |
| 41 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 2.15E-02 |
| 42 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 2.37E-02 |
| 43 | GO:0004519: endonuclease activity | 2.51E-02 |
| 44 | GO:0004674: protein serine/threonine kinase activity | 4.39E-02 |
| 45 | GO:0019825: oxygen binding | 4.57E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030076: light-harvesting complex | 1.41E-07 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 3.01E-07 |
| 3 | GO:0010287: plastoglobule | 6.72E-07 |
| 4 | GO:0009522: photosystem I | 8.68E-07 |
| 5 | GO:0009941: chloroplast envelope | 4.31E-05 |
| 6 | GO:0009579: thylakoid | 6.16E-05 |
| 7 | GO:0009523: photosystem II | 7.95E-05 |
| 8 | GO:0016605: PML body | 8.61E-05 |
| 9 | GO:0009517: PSII associated light-harvesting complex II | 1.78E-04 |
| 10 | GO:0009507: chloroplast | 4.18E-04 |
| 11 | GO:0016604: nuclear body | 6.61E-04 |
| 12 | GO:0009534: chloroplast thylakoid | 6.67E-04 |
| 13 | GO:0042651: thylakoid membrane | 1.35E-03 |
| 14 | GO:0016020: membrane | 2.19E-03 |
| 15 | GO:0016607: nuclear speck | 6.91E-03 |
| 16 | GO:0005834: heterotrimeric G-protein complex | 7.07E-03 |
| 17 | GO:0009706: chloroplast inner membrane | 7.69E-03 |
| 18 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.64E-02 |
| 19 | GO:0031969: chloroplast membrane | 1.79E-02 |
| 20 | GO:0016021: integral component of membrane | 2.17E-02 |
| 21 | GO:0043231: intracellular membrane-bounded organelle | 2.53E-02 |