Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G48070

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0006223: uracil salvage0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:0042407: cristae formation0.00E+00
6GO:0042493: response to drug0.00E+00
7GO:0042371: vitamin K biosynthetic process0.00E+00
8GO:1905499: trichome papilla formation0.00E+00
9GO:0006412: translation3.65E-14
10GO:0042254: ribosome biogenesis3.43E-10
11GO:0032544: plastid translation1.52E-07
12GO:0015976: carbon utilization4.51E-07
13GO:0009735: response to cytokinin5.69E-05
14GO:2000122: negative regulation of stomatal complex development6.10E-05
15GO:0010037: response to carbon dioxide6.10E-05
16GO:0010143: cutin biosynthetic process6.96E-05
17GO:0010207: photosystem II assembly6.96E-05
18GO:0010025: wax biosynthetic process9.85E-05
19GO:0042372: phylloquinone biosynthetic process1.90E-04
20GO:0000413: protein peptidyl-prolyl isomerization2.77E-04
21GO:0045490: pectin catabolic process2.86E-04
22GO:0046520: sphingoid biosynthetic process3.07E-04
23GO:1904966: positive regulation of vitamin E biosynthetic process3.07E-04
24GO:0010442: guard cell morphogenesis3.07E-04
25GO:0042547: cell wall modification involved in multidimensional cell growth3.07E-04
26GO:1904964: positive regulation of phytol biosynthetic process3.07E-04
27GO:0042759: long-chain fatty acid biosynthetic process3.07E-04
28GO:1902458: positive regulation of stomatal opening3.07E-04
29GO:0071588: hydrogen peroxide mediated signaling pathway3.07E-04
30GO:0060627: regulation of vesicle-mediated transport3.07E-04
31GO:0071554: cell wall organization or biogenesis4.05E-04
32GO:0010027: thylakoid membrane organization6.52E-04
33GO:1902326: positive regulation of chlorophyll biosynthetic process6.71E-04
34GO:0006423: cysteinyl-tRNA aminoacylation6.71E-04
35GO:1903426: regulation of reactive oxygen species biosynthetic process6.71E-04
36GO:0052541: plant-type cell wall cellulose metabolic process6.71E-04
37GO:0006006: glucose metabolic process9.50E-04
38GO:0030036: actin cytoskeleton organization9.50E-04
39GO:0010119: regulation of stomatal movement1.09E-03
40GO:0015840: urea transport1.09E-03
41GO:0006696: ergosterol biosynthetic process1.09E-03
42GO:2001295: malonyl-CoA biosynthetic process1.09E-03
43GO:0015979: photosynthesis1.17E-03
44GO:0045454: cell redox homeostasis1.27E-03
45GO:0006633: fatty acid biosynthetic process1.32E-03
46GO:0006833: water transport1.33E-03
47GO:0006631: fatty acid metabolic process1.52E-03
48GO:0006241: CTP biosynthetic process1.56E-03
49GO:0009650: UV protection1.56E-03
50GO:0051016: barbed-end actin filament capping1.56E-03
51GO:0046739: transport of virus in multicellular host1.56E-03
52GO:0006165: nucleoside diphosphate phosphorylation1.56E-03
53GO:1901332: negative regulation of lateral root development1.56E-03
54GO:0006228: UTP biosynthetic process1.56E-03
55GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.56E-03
56GO:0051639: actin filament network formation1.56E-03
57GO:0042546: cell wall biogenesis1.77E-03
58GO:0006183: GTP biosynthetic process2.09E-03
59GO:0000919: cell plate assembly2.09E-03
60GO:0044206: UMP salvage2.09E-03
61GO:0006808: regulation of nitrogen utilization2.09E-03
62GO:0051764: actin crosslink formation2.09E-03
63GO:0051322: anaphase2.09E-03
64GO:0009765: photosynthesis, light harvesting2.09E-03
65GO:0009411: response to UV2.12E-03
66GO:0048359: mucilage metabolic process involved in seed coat development2.67E-03
67GO:0016120: carotene biosynthetic process2.67E-03
68GO:0010236: plastoquinone biosynthetic process2.67E-03
69GO:0045038: protein import into chloroplast thylakoid membrane2.67E-03
70GO:0043097: pyrimidine nucleoside salvage2.67E-03
71GO:0016123: xanthophyll biosynthetic process2.67E-03
72GO:0006665: sphingolipid metabolic process2.67E-03
73GO:0042335: cuticle development2.70E-03
74GO:0055114: oxidation-reduction process3.04E-03
75GO:0006206: pyrimidine nucleobase metabolic process3.30E-03
76GO:0032973: amino acid export3.30E-03
77GO:0042549: photosystem II stabilization3.30E-03
78GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.30E-03
79GO:0010583: response to cyclopentenone3.83E-03
80GO:0032502: developmental process3.83E-03
81GO:0006694: steroid biosynthetic process3.97E-03
82GO:1901259: chloroplast rRNA processing3.97E-03
83GO:0009854: oxidative photosynthetic carbon pathway3.97E-03
84GO:0010019: chloroplast-nucleus signaling pathway3.97E-03
85GO:0010555: response to mannitol3.97E-03
86GO:0009955: adaxial/abaxial pattern specification3.97E-03
87GO:0051693: actin filament capping4.68E-03
88GO:0071669: plant-type cell wall organization or biogenesis4.68E-03
89GO:0009610: response to symbiotic fungus4.68E-03
90GO:0048528: post-embryonic root development4.68E-03
91GO:0009772: photosynthetic electron transport in photosystem II4.68E-03
92GO:0043090: amino acid import4.68E-03
93GO:0009642: response to light intensity5.44E-03
94GO:0042255: ribosome assembly5.44E-03
95GO:0046620: regulation of organ growth5.44E-03
96GO:0006353: DNA-templated transcription, termination5.44E-03
97GO:2000070: regulation of response to water deprivation5.44E-03
98GO:0045010: actin nucleation5.44E-03
99GO:0042742: defense response to bacterium5.54E-03
100GO:0015995: chlorophyll biosynthetic process6.11E-03
101GO:0010411: xyloglucan metabolic process6.11E-03
102GO:0007186: G-protein coupled receptor signaling pathway6.23E-03
103GO:0010497: plasmodesmata-mediated intercellular transport6.23E-03
104GO:0006526: arginine biosynthetic process6.23E-03
105GO:0009808: lignin metabolic process6.23E-03
106GO:0009932: cell tip growth6.23E-03
107GO:0015996: chlorophyll catabolic process6.23E-03
108GO:0009051: pentose-phosphate shunt, oxidative branch7.07E-03
109GO:0010206: photosystem II repair7.07E-03
110GO:0080144: amino acid homeostasis7.07E-03
111GO:0000902: cell morphogenesis7.07E-03
112GO:0015780: nucleotide-sugar transport7.07E-03
113GO:0010311: lateral root formation7.11E-03
114GO:0006779: porphyrin-containing compound biosynthetic process7.94E-03
115GO:0042761: very long-chain fatty acid biosynthetic process7.94E-03
116GO:0043067: regulation of programmed cell death7.94E-03
117GO:0006782: protoporphyrinogen IX biosynthetic process8.84E-03
118GO:0009870: defense response signaling pathway, resistance gene-dependent8.84E-03
119GO:0043069: negative regulation of programmed cell death8.84E-03
120GO:0006949: syncytium formation8.84E-03
121GO:0034599: cellular response to oxidative stress8.98E-03
122GO:0019684: photosynthesis, light reaction9.79E-03
123GO:0009773: photosynthetic electron transport in photosystem I9.79E-03
124GO:0009089: lysine biosynthetic process via diaminopimelate9.79E-03
125GO:0043085: positive regulation of catalytic activity9.79E-03
126GO:0018119: peptidyl-cysteine S-nitrosylation9.79E-03
127GO:0009409: response to cold1.00E-02
128GO:0002213: defense response to insect1.08E-02
129GO:0016024: CDP-diacylglycerol biosynthetic process1.08E-02
130GO:0045037: protein import into chloroplast stroma1.08E-02
131GO:0050826: response to freezing1.18E-02
132GO:0007015: actin filament organization1.28E-02
133GO:0019253: reductive pentose-phosphate cycle1.28E-02
134GO:0006636: unsaturated fatty acid biosynthetic process1.50E-02
135GO:0006071: glycerol metabolic process1.50E-02
136GO:0019762: glucosinolate catabolic process1.50E-02
137GO:0000027: ribosomal large subunit assembly1.62E-02
138GO:0051017: actin filament bundle assembly1.62E-02
139GO:0019344: cysteine biosynthetic process1.62E-02
140GO:0009116: nucleoside metabolic process1.62E-02
141GO:0071555: cell wall organization1.71E-02
142GO:0010026: trichome differentiation1.74E-02
143GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.85E-02
144GO:0061077: chaperone-mediated protein folding1.86E-02
145GO:0009814: defense response, incompatible interaction1.98E-02
146GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.11E-02
147GO:0010091: trichome branching2.24E-02
148GO:0009306: protein secretion2.24E-02
149GO:0016117: carotenoid biosynthetic process2.37E-02
150GO:0000226: microtubule cytoskeleton organization2.50E-02
151GO:0000271: polysaccharide biosynthetic process2.50E-02
152GO:0008033: tRNA processing2.50E-02
153GO:0034220: ion transmembrane transport2.50E-02
154GO:0055085: transmembrane transport2.54E-02
155GO:0006457: protein folding2.61E-02
156GO:0006520: cellular amino acid metabolic process2.64E-02
157GO:0006662: glycerol ether metabolic process2.64E-02
158GO:0010197: polar nucleus fusion2.64E-02
159GO:0010182: sugar mediated signaling pathway2.64E-02
160GO:0007018: microtubule-based movement2.78E-02
161GO:0016042: lipid catabolic process2.79E-02
162GO:0000302: response to reactive oxygen species3.07E-02
163GO:0016132: brassinosteroid biosynthetic process3.07E-02
164GO:0007264: small GTPase mediated signal transduction3.21E-02
165GO:0010090: trichome morphogenesis3.36E-02
166GO:1901657: glycosyl compound metabolic process3.36E-02
167GO:0009828: plant-type cell wall loosening3.52E-02
168GO:0000910: cytokinesis3.83E-02
169GO:0009627: systemic acquired resistance4.31E-02
170GO:0016311: dephosphorylation4.64E-02
171GO:0009817: defense response to fungus, incompatible interaction4.81E-02
172GO:0030244: cellulose biosynthetic process4.81E-02
173GO:0018298: protein-chromophore linkage4.81E-02
174GO:0009813: flavonoid biosynthetic process4.98E-02
175GO:0009832: plant-type cell wall biogenesis4.98E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0008887: glycerate kinase activity0.00E+00
3GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
4GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
5GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
6GO:0045435: lycopene epsilon cyclase activity0.00E+00
7GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
8GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
9GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
10GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
11GO:0050614: delta24-sterol reductase activity0.00E+00
12GO:0019843: rRNA binding3.38E-18
13GO:0003735: structural constituent of ribosome9.64E-17
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.55E-08
15GO:0030570: pectate lyase activity2.60E-07
16GO:0051920: peroxiredoxin activity3.44E-06
17GO:0016209: antioxidant activity8.33E-06
18GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.52E-05
19GO:0004089: carbonate dehydratase activity5.74E-05
20GO:0005528: FK506 binding1.15E-04
21GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.07E-04
22GO:0080132: fatty acid alpha-hydroxylase activity3.07E-04
23GO:0015200: methylammonium transmembrane transporter activity3.07E-04
24GO:0031957: very long-chain fatty acid-CoA ligase activity3.07E-04
25GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.07E-04
26GO:0000170: sphingosine hydroxylase activity3.07E-04
27GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.07E-04
28GO:0016413: O-acetyltransferase activity6.06E-04
29GO:0042284: sphingolipid delta-4 desaturase activity6.71E-04
30GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.71E-04
31GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.71E-04
32GO:0042389: omega-3 fatty acid desaturase activity6.71E-04
33GO:0004817: cysteine-tRNA ligase activity6.71E-04
34GO:0016829: lyase activity1.06E-03
35GO:0017150: tRNA dihydrouridine synthase activity1.09E-03
36GO:0005504: fatty acid binding1.09E-03
37GO:0050734: hydroxycinnamoyltransferase activity1.09E-03
38GO:0004148: dihydrolipoyl dehydrogenase activity1.09E-03
39GO:0004075: biotin carboxylase activity1.09E-03
40GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.09E-03
41GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.09E-03
42GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.56E-03
43GO:0004550: nucleoside diphosphate kinase activity1.56E-03
44GO:0008097: 5S rRNA binding1.56E-03
45GO:0001872: (1->3)-beta-D-glucan binding1.56E-03
46GO:0045430: chalcone isomerase activity2.09E-03
47GO:0046527: glucosyltransferase activity2.09E-03
48GO:0052793: pectin acetylesterase activity2.09E-03
49GO:0043495: protein anchor2.09E-03
50GO:0015204: urea transmembrane transporter activity2.09E-03
51GO:0004659: prenyltransferase activity2.09E-03
52GO:0004845: uracil phosphoribosyltransferase activity2.09E-03
53GO:0004345: glucose-6-phosphate dehydrogenase activity2.09E-03
54GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.09E-03
55GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.38E-03
56GO:0009922: fatty acid elongase activity2.67E-03
57GO:0051011: microtubule minus-end binding2.67E-03
58GO:0016773: phosphotransferase activity, alcohol group as acceptor2.67E-03
59GO:0004040: amidase activity2.67E-03
60GO:0003989: acetyl-CoA carboxylase activity2.67E-03
61GO:0016788: hydrolase activity, acting on ester bonds3.06E-03
62GO:0019137: thioglucosidase activity3.30E-03
63GO:0004130: cytochrome-c peroxidase activity3.30E-03
64GO:0016208: AMP binding3.30E-03
65GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.30E-03
66GO:0016688: L-ascorbate peroxidase activity3.30E-03
67GO:0008200: ion channel inhibitor activity3.30E-03
68GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.30E-03
69GO:0008519: ammonium transmembrane transporter activity3.30E-03
70GO:0016762: xyloglucan:xyloglucosyl transferase activity3.59E-03
71GO:0051753: mannan synthase activity3.97E-03
72GO:0004849: uridine kinase activity3.97E-03
73GO:0102391: decanoate--CoA ligase activity3.97E-03
74GO:0051015: actin filament binding4.09E-03
75GO:0019899: enzyme binding4.68E-03
76GO:0004467: long-chain fatty acid-CoA ligase activity4.68E-03
77GO:0052689: carboxylic ester hydrolase activity4.81E-03
78GO:0015250: water channel activity5.19E-03
79GO:0030674: protein binding, bridging5.44E-03
80GO:0016798: hydrolase activity, acting on glycosyl bonds6.11E-03
81GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.23E-03
82GO:0008889: glycerophosphodiester phosphodiesterase activity7.07E-03
83GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.07E-03
84GO:0047617: acyl-CoA hydrolase activity7.94E-03
85GO:0008017: microtubule binding8.19E-03
86GO:0008047: enzyme activator activity8.84E-03
87GO:0003993: acid phosphatase activity8.98E-03
88GO:0008422: beta-glucosidase activity9.38E-03
89GO:0050661: NADP binding9.80E-03
90GO:0008266: poly(U) RNA binding1.28E-02
91GO:0004601: peroxidase activity1.35E-02
92GO:0051287: NAD binding1.35E-02
93GO:0003690: double-stranded DNA binding1.55E-02
94GO:0003777: microtubule motor activity1.66E-02
95GO:0008324: cation transmembrane transporter activity1.74E-02
96GO:0004707: MAP kinase activity1.86E-02
97GO:0016760: cellulose synthase (UDP-forming) activity2.11E-02
98GO:0022891: substrate-specific transmembrane transporter activity2.11E-02
99GO:0003727: single-stranded RNA binding2.24E-02
100GO:0008514: organic anion transmembrane transporter activity2.24E-02
101GO:0047134: protein-disulfide reductase activity2.37E-02
102GO:0008080: N-acetyltransferase activity2.64E-02
103GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity2.64E-02
104GO:0004791: thioredoxin-disulfide reductase activity2.78E-02
105GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.36E-02
106GO:0016791: phosphatase activity3.52E-02
107GO:0016722: oxidoreductase activity, oxidizing metal ions3.67E-02
108GO:0016168: chlorophyll binding4.15E-02
109GO:0102483: scopolin beta-glucosidase activity4.48E-02
110GO:0030247: polysaccharide binding4.48E-02
111GO:0008236: serine-type peptidase activity4.64E-02
112GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.81E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009570: chloroplast stroma1.04E-37
3GO:0009507: chloroplast2.42E-32
4GO:0009941: chloroplast envelope1.50E-28
5GO:0009579: thylakoid2.57E-21
6GO:0005840: ribosome1.35E-18
7GO:0009535: chloroplast thylakoid membrane3.47E-16
8GO:0031977: thylakoid lumen1.81E-14
9GO:0009543: chloroplast thylakoid lumen1.56E-13
10GO:0009534: chloroplast thylakoid3.90E-08
11GO:0031225: anchored component of membrane1.56E-07
12GO:0000311: plastid large ribosomal subunit1.10E-06
13GO:0046658: anchored component of plasma membrane8.56E-06
14GO:0048046: apoplast1.50E-05
15GO:0010319: stromule4.89E-05
16GO:0016020: membrane1.42E-04
17GO:0009505: plant-type cell wall2.67E-04
18GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.07E-04
19GO:0009923: fatty acid elongase complex3.07E-04
20GO:0009547: plastid ribosome3.07E-04
21GO:0042170: plastid membrane6.71E-04
22GO:0008290: F-actin capping protein complex6.71E-04
23GO:0005884: actin filament7.36E-04
24GO:0030095: chloroplast photosystem II1.07E-03
25GO:0009528: plastid inner membrane1.09E-03
26GO:0015934: large ribosomal subunit1.09E-03
27GO:0022626: cytosolic ribosome1.26E-03
28GO:0032432: actin filament bundle1.56E-03
29GO:0009654: photosystem II oxygen evolving complex1.62E-03
30GO:0042651: thylakoid membrane1.62E-03
31GO:0009527: plastid outer membrane2.09E-03
32GO:0072686: mitotic spindle2.67E-03
33GO:0031209: SCAR complex3.30E-03
34GO:0019898: extrinsic component of membrane3.35E-03
35GO:0005874: microtubule3.92E-03
36GO:0031969: chloroplast membrane4.14E-03
37GO:0042807: central vacuole4.68E-03
38GO:0009533: chloroplast stromal thylakoid4.68E-03
39GO:0005618: cell wall5.43E-03
40GO:0005576: extracellular region5.70E-03
41GO:0000326: protein storage vacuole6.23E-03
42GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.07E-03
43GO:0000922: spindle pole7.07E-03
44GO:0005763: mitochondrial small ribosomal subunit7.07E-03
45GO:0005876: spindle microtubule7.94E-03
46GO:0055028: cortical microtubule8.84E-03
47GO:0005819: spindle9.38E-03
48GO:0009574: preprophase band1.18E-02
49GO:0009506: plasmodesma1.22E-02
50GO:0015935: small ribosomal subunit1.86E-02
51GO:0009532: plastid stroma1.86E-02
52GO:0022625: cytosolic large ribosomal subunit1.89E-02
53GO:0005871: kinesin complex2.37E-02
54GO:0010287: plastoglobule2.54E-02
55GO:0009524: phragmoplast2.83E-02
56GO:0009523: photosystem II2.92E-02
57GO:0016592: mediator complex3.21E-02
58GO:0005778: peroxisomal membrane3.67E-02
59GO:0009707: chloroplast outer membrane4.81E-02
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Gene type



Gene DE type