Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G47940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
2GO:0042493: response to drug0.00E+00
3GO:0042371: vitamin K biosynthetic process0.00E+00
4GO:0006399: tRNA metabolic process0.00E+00
5GO:0034337: RNA folding0.00E+00
6GO:2000505: regulation of energy homeostasis0.00E+00
7GO:0002184: cytoplasmic translational termination0.00E+00
8GO:0045014: negative regulation of transcription by glucose0.00E+00
9GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
10GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
11GO:0006223: uracil salvage0.00E+00
12GO:0090071: negative regulation of ribosome biogenesis0.00E+00
13GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
14GO:0033494: ferulate metabolic process0.00E+00
15GO:0016553: base conversion or substitution editing0.00E+00
16GO:0061635: regulation of protein complex stability0.00E+00
17GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
18GO:0015979: photosynthesis1.52E-15
19GO:0006412: translation3.84E-15
20GO:0042254: ribosome biogenesis3.02E-10
21GO:0015995: chlorophyll biosynthetic process9.58E-10
22GO:0032544: plastid translation4.70E-09
23GO:0009735: response to cytokinin1.11E-06
24GO:0010207: photosystem II assembly5.75E-06
25GO:1902326: positive regulation of chlorophyll biosynthetic process8.09E-06
26GO:0042335: cuticle development4.32E-05
27GO:0010027: thylakoid membrane organization1.48E-04
28GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.34E-04
29GO:0010196: nonphotochemical quenching4.06E-04
30GO:0000481: maturation of 5S rRNA4.26E-04
31GO:0042759: long-chain fatty acid biosynthetic process4.26E-04
32GO:2000021: regulation of ion homeostasis4.26E-04
33GO:0071588: hydrogen peroxide mediated signaling pathway4.26E-04
34GO:0006434: seryl-tRNA aminoacylation4.26E-04
35GO:0043489: RNA stabilization4.26E-04
36GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process4.26E-04
37GO:0043266: regulation of potassium ion transport4.26E-04
38GO:0010206: photosystem II repair7.43E-04
39GO:0010205: photoinhibition8.75E-04
40GO:0001736: establishment of planar polarity9.21E-04
41GO:0006729: tetrahydrobiopterin biosynthetic process9.21E-04
42GO:0006568: tryptophan metabolic process9.21E-04
43GO:0010024: phytochromobilin biosynthetic process9.21E-04
44GO:0043039: tRNA aminoacylation9.21E-04
45GO:1900871: chloroplast mRNA modification9.21E-04
46GO:0010541: acropetal auxin transport9.21E-04
47GO:0043085: positive regulation of catalytic activity1.17E-03
48GO:0016024: CDP-diacylglycerol biosynthetic process1.34E-03
49GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.50E-03
50GO:0090391: granum assembly1.50E-03
51GO:0006518: peptide metabolic process1.50E-03
52GO:0010581: regulation of starch biosynthetic process1.50E-03
53GO:0006788: heme oxidation1.50E-03
54GO:0080055: low-affinity nitrate transport1.50E-03
55GO:0010160: formation of animal organ boundary1.50E-03
56GO:0009658: chloroplast organization1.51E-03
57GO:0006006: glucose metabolic process1.52E-03
58GO:0018298: protein-chromophore linkage1.67E-03
59GO:0010143: cutin biosynthetic process1.72E-03
60GO:0010025: wax biosynthetic process2.14E-03
61GO:0006636: unsaturated fatty acid biosynthetic process2.14E-03
62GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.17E-03
63GO:2001141: regulation of RNA biosynthetic process2.17E-03
64GO:0051513: regulation of monopolar cell growth2.17E-03
65GO:0071484: cellular response to light intensity2.17E-03
66GO:0051639: actin filament network formation2.17E-03
67GO:0009052: pentose-phosphate shunt, non-oxidative branch2.17E-03
68GO:0009650: UV protection2.17E-03
69GO:0006241: CTP biosynthetic process2.17E-03
70GO:0080170: hydrogen peroxide transmembrane transport2.17E-03
71GO:0043481: anthocyanin accumulation in tissues in response to UV light2.17E-03
72GO:0006424: glutamyl-tRNA aminoacylation2.17E-03
73GO:0006165: nucleoside diphosphate phosphorylation2.17E-03
74GO:1901332: negative regulation of lateral root development2.17E-03
75GO:0006228: UTP biosynthetic process2.17E-03
76GO:0009637: response to blue light2.27E-03
77GO:0009734: auxin-activated signaling pathway2.31E-03
78GO:0031408: oxylipin biosynthetic process2.89E-03
79GO:0051764: actin crosslink formation2.91E-03
80GO:0009765: photosynthesis, light harvesting2.91E-03
81GO:0006183: GTP biosynthetic process2.91E-03
82GO:0045727: positive regulation of translation2.91E-03
83GO:0030104: water homeostasis2.91E-03
84GO:0015994: chlorophyll metabolic process2.91E-03
85GO:0044206: UMP salvage2.91E-03
86GO:0009926: auxin polar transport3.13E-03
87GO:0009411: response to UV3.45E-03
88GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.45E-03
89GO:0010236: plastoquinone biosynthetic process3.73E-03
90GO:0043097: pyrimidine nucleoside salvage3.73E-03
91GO:0045038: protein import into chloroplast thylakoid membrane3.73E-03
92GO:0000304: response to singlet oxygen3.73E-03
93GO:0032543: mitochondrial translation3.73E-03
94GO:0009306: protein secretion3.75E-03
95GO:0048443: stamen development3.75E-03
96GO:0009664: plant-type cell wall organization4.19E-03
97GO:0034220: ion transmembrane transport4.40E-03
98GO:0000413: protein peptidyl-prolyl isomerization4.40E-03
99GO:0006751: glutathione catabolic process4.61E-03
100GO:0042549: photosystem II stabilization4.61E-03
101GO:0000470: maturation of LSU-rRNA4.61E-03
102GO:0009913: epidermal cell differentiation4.61E-03
103GO:0006655: phosphatidylglycerol biosynthetic process4.61E-03
104GO:0060918: auxin transport4.61E-03
105GO:0006206: pyrimidine nucleobase metabolic process4.61E-03
106GO:0032973: amino acid export4.61E-03
107GO:0009958: positive gravitropism4.74E-03
108GO:0030488: tRNA methylation5.57E-03
109GO:0009854: oxidative photosynthetic carbon pathway5.57E-03
110GO:0010019: chloroplast-nucleus signaling pathway5.57E-03
111GO:0042372: phylloquinone biosynthetic process5.57E-03
112GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.57E-03
113GO:0017148: negative regulation of translation5.57E-03
114GO:1901259: chloroplast rRNA processing5.57E-03
115GO:0009772: photosynthetic electron transport in photosystem II6.58E-03
116GO:0043090: amino acid import6.58E-03
117GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.58E-03
118GO:0006400: tRNA modification6.58E-03
119GO:0009828: plant-type cell wall loosening7.11E-03
120GO:0032508: DNA duplex unwinding7.65E-03
121GO:0010492: maintenance of shoot apical meristem identity7.65E-03
122GO:0048564: photosystem I assembly7.65E-03
123GO:0030091: protein repair7.65E-03
124GO:0008610: lipid biosynthetic process7.65E-03
125GO:0006605: protein targeting7.65E-03
126GO:0046620: regulation of organ growth7.65E-03
127GO:0071482: cellular response to light stimulus8.79E-03
128GO:0019430: removal of superoxide radicals8.79E-03
129GO:0009657: plastid organization8.79E-03
130GO:0048589: developmental growth9.98E-03
131GO:0009051: pentose-phosphate shunt, oxidative branch9.98E-03
132GO:0009245: lipid A biosynthetic process9.98E-03
133GO:0080144: amino acid homeostasis9.98E-03
134GO:0048507: meristem development9.98E-03
135GO:0006779: porphyrin-containing compound biosynthetic process1.12E-02
136GO:0010380: regulation of chlorophyll biosynthetic process1.12E-02
137GO:0010311: lateral root formation1.17E-02
138GO:0009416: response to light stimulus1.19E-02
139GO:0010218: response to far red light1.23E-02
140GO:0048829: root cap development1.25E-02
141GO:0006782: protoporphyrinogen IX biosynthetic process1.25E-02
142GO:0006535: cysteine biosynthetic process from serine1.25E-02
143GO:0006633: fatty acid biosynthetic process1.28E-02
144GO:0009631: cold acclimation1.29E-02
145GO:0018119: peptidyl-cysteine S-nitrosylation1.39E-02
146GO:0048765: root hair cell differentiation1.39E-02
147GO:0009684: indoleacetic acid biosynthetic process1.39E-02
148GO:0010015: root morphogenesis1.39E-02
149GO:0000038: very long-chain fatty acid metabolic process1.39E-02
150GO:0009773: photosynthetic electron transport in photosystem I1.39E-02
151GO:0009073: aromatic amino acid family biosynthetic process1.39E-02
152GO:1903507: negative regulation of nucleic acid-templated transcription1.39E-02
153GO:0006352: DNA-templated transcription, initiation1.39E-02
154GO:0045490: pectin catabolic process1.45E-02
155GO:0034599: cellular response to oxidative stress1.48E-02
156GO:0009451: RNA modification1.49E-02
157GO:0008361: regulation of cell size1.53E-02
158GO:0010152: pollen maturation1.53E-02
159GO:0030001: metal ion transport1.61E-02
160GO:0009718: anthocyanin-containing compound biosynthetic process1.67E-02
161GO:0055085: transmembrane transport1.80E-02
162GO:0009733: response to auxin1.81E-02
163GO:0019253: reductive pentose-phosphate cycle1.82E-02
164GO:0010114: response to red light1.82E-02
165GO:0010540: basipetal auxin transport1.82E-02
166GO:0008152: metabolic process1.83E-02
167GO:0006855: drug transmembrane transport2.13E-02
168GO:0006833: water transport2.14E-02
169GO:0019344: cysteine biosynthetic process2.30E-02
170GO:0009116: nucleoside metabolic process2.30E-02
171GO:0000027: ribosomal large subunit assembly2.30E-02
172GO:0051017: actin filament bundle assembly2.30E-02
173GO:0009768: photosynthesis, light harvesting in photosystem I2.47E-02
174GO:0003333: amino acid transmembrane transport2.64E-02
175GO:0061077: chaperone-mediated protein folding2.64E-02
176GO:0016114: terpenoid biosynthetic process2.64E-02
177GO:0007005: mitochondrion organization2.82E-02
178GO:2000022: regulation of jasmonic acid mediated signaling pathway2.82E-02
179GO:0035428: hexose transmembrane transport2.82E-02
180GO:0009793: embryo development ending in seed dormancy2.97E-02
181GO:0080022: primary root development3.56E-02
182GO:0046323: glucose import3.75E-02
183GO:0006662: glycerol ether metabolic process3.75E-02
184GO:0007018: microtubule-based movement3.95E-02
185GO:0045454: cell redox homeostasis4.11E-02
186GO:0000302: response to reactive oxygen species4.36E-02
187GO:0032502: developmental process4.57E-02
188GO:0009630: gravitropism4.57E-02
189GO:0006869: lipid transport4.59E-02
190GO:1901657: glycosyl compound metabolic process4.78E-02
191GO:0042744: hydrogen peroxide catabolic process4.97E-02
192GO:0009567: double fertilization forming a zygote and endosperm4.99E-02
193GO:0009639: response to red or far red light4.99E-02
RankGO TermAdjusted P value
1GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
2GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
3GO:0005048: signal sequence binding0.00E+00
4GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
5GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
6GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
7GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
8GO:0043864: indoleacetamide hydrolase activity0.00E+00
9GO:0008887: glycerate kinase activity0.00E+00
10GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
11GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
12GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
13GO:0019843: rRNA binding1.52E-24
14GO:0003735: structural constituent of ribosome2.18E-16
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.42E-11
16GO:0005528: FK506 binding1.01E-10
17GO:0016851: magnesium chelatase activity3.78E-07
18GO:0043023: ribosomal large subunit binding6.06E-05
19GO:0010011: auxin binding1.06E-04
20GO:0043495: protein anchor1.06E-04
21GO:0008266: poly(U) RNA binding1.43E-04
22GO:0016168: chlorophyll binding1.64E-04
23GO:0004040: amidase activity1.64E-04
24GO:0019899: enzyme binding4.06E-04
25GO:0004425: indole-3-glycerol-phosphate synthase activity4.26E-04
26GO:0004828: serine-tRNA ligase activity4.26E-04
27GO:0045485: omega-6 fatty acid desaturase activity4.26E-04
28GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.26E-04
29GO:0047746: chlorophyllase activity9.21E-04
30GO:0003839: gamma-glutamylcyclotransferase activity9.21E-04
31GO:0016630: protochlorophyllide reductase activity9.21E-04
32GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity9.21E-04
33GO:0008047: enzyme activator activity1.02E-03
34GO:0005509: calcium ion binding1.41E-03
35GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.50E-03
36GO:0080054: low-affinity nitrate transmembrane transporter activity1.50E-03
37GO:0050734: hydroxycinnamoyltransferase activity1.50E-03
38GO:0004751: ribose-5-phosphate isomerase activity1.50E-03
39GO:0004550: nucleoside diphosphate kinase activity2.17E-03
40GO:0008097: 5S rRNA binding2.17E-03
41GO:0004392: heme oxygenase (decyclizing) activity2.91E-03
42GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.91E-03
43GO:0004659: prenyltransferase activity2.91E-03
44GO:0001053: plastid sigma factor activity2.91E-03
45GO:0004845: uracil phosphoribosyltransferase activity2.91E-03
46GO:0004345: glucose-6-phosphate dehydrogenase activity2.91E-03
47GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.91E-03
48GO:0004045: aminoacyl-tRNA hydrolase activity2.91E-03
49GO:0016987: sigma factor activity2.91E-03
50GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.91E-03
51GO:0010328: auxin influx transmembrane transporter activity2.91E-03
52GO:0052793: pectin acetylesterase activity2.91E-03
53GO:0022891: substrate-specific transmembrane transporter activity3.45E-03
54GO:0030570: pectate lyase activity3.45E-03
55GO:0003959: NADPH dehydrogenase activity3.73E-03
56GO:0016773: phosphotransferase activity, alcohol group as acceptor3.73E-03
57GO:0016787: hydrolase activity4.04E-03
58GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.61E-03
59GO:0031177: phosphopantetheine binding4.61E-03
60GO:0004130: cytochrome-c peroxidase activity4.61E-03
61GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.61E-03
62GO:0016688: L-ascorbate peroxidase activity4.61E-03
63GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.67E-03
64GO:0004791: thioredoxin-disulfide reductase activity5.10E-03
65GO:0003723: RNA binding5.32E-03
66GO:0004124: cysteine synthase activity5.57E-03
67GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.57E-03
68GO:0004017: adenylate kinase activity5.57E-03
69GO:0004849: uridine kinase activity5.57E-03
70GO:0000035: acyl binding5.57E-03
71GO:0016788: hydrolase activity, acting on ester bonds6.49E-03
72GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.67E-03
73GO:0016746: transferase activity, transferring acyl groups7.48E-03
74GO:0008312: 7S RNA binding7.65E-03
75GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process7.65E-03
76GO:0015250: water channel activity8.49E-03
77GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.79E-03
78GO:0016491: oxidoreductase activity9.16E-03
79GO:0052689: carboxylic ester hydrolase activity1.02E-02
80GO:0016829: lyase activity1.06E-02
81GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.11E-02
82GO:0003729: mRNA binding1.19E-02
83GO:0015020: glucuronosyltransferase activity1.25E-02
84GO:0050661: NADP binding1.61E-02
85GO:0031072: heat shock protein binding1.67E-02
86GO:0009982: pseudouridine synthase activity1.67E-02
87GO:0004565: beta-galactosidase activity1.67E-02
88GO:0004022: alcohol dehydrogenase (NAD) activity1.67E-02
89GO:0010329: auxin efflux transmembrane transporter activity1.67E-02
90GO:0016740: transferase activity1.68E-02
91GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.14E-02
92GO:0031409: pigment binding2.14E-02
93GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.14E-02
94GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.14E-02
95GO:0051536: iron-sulfur cluster binding2.30E-02
96GO:0003714: transcription corepressor activity2.30E-02
97GO:0004707: MAP kinase activity2.64E-02
98GO:0015171: amino acid transmembrane transporter activity2.73E-02
99GO:0005525: GTP binding2.79E-02
100GO:0003756: protein disulfide isomerase activity3.18E-02
101GO:0047134: protein-disulfide reductase activity3.37E-02
102GO:0008080: N-acetyltransferase activity3.75E-02
103GO:0005355: glucose transmembrane transporter activity3.95E-02
104GO:0050662: coenzyme binding3.95E-02
105GO:0010181: FMN binding3.95E-02
106GO:0005515: protein binding4.41E-02
107GO:0005215: transporter activity4.62E-02
108GO:0051015: actin filament binding4.78E-02
109GO:0016791: phosphatase activity4.99E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
3GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
4GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
5GO:0009507: chloroplast3.07E-69
6GO:0009570: chloroplast stroma3.68E-54
7GO:0009941: chloroplast envelope9.81E-42
8GO:0009579: thylakoid1.87E-29
9GO:0009535: chloroplast thylakoid membrane4.91E-29
10GO:0009543: chloroplast thylakoid lumen6.21E-28
11GO:0009534: chloroplast thylakoid1.10E-22
12GO:0031977: thylakoid lumen5.81E-20
13GO:0005840: ribosome1.59E-18
14GO:0009654: photosystem II oxygen evolving complex1.54E-10
15GO:0019898: extrinsic component of membrane3.01E-09
16GO:0010007: magnesium chelatase complex7.87E-08
17GO:0030095: chloroplast photosystem II1.25E-07
18GO:0016020: membrane6.26E-06
19GO:0031969: chloroplast membrane1.63E-05
20GO:0000311: plastid large ribosomal subunit9.79E-05
21GO:0009295: nucleoid1.21E-04
22GO:0042651: thylakoid membrane2.63E-04
23GO:0009547: plastid ribosome4.26E-04
24GO:0043674: columella4.26E-04
25GO:0009515: granal stacked thylakoid4.26E-04
26GO:0009523: photosystem II6.92E-04
27GO:0080085: signal recognition particle, chloroplast targeting9.21E-04
28GO:0030093: chloroplast photosystem I9.21E-04
29GO:0032040: small-subunit processome1.34E-03
30GO:0009509: chromoplast1.50E-03
31GO:0009508: plastid chromosome1.52E-03
32GO:0000312: plastid small ribosomal subunit1.72E-03
33GO:0009531: secondary cell wall2.17E-03
34GO:0032432: actin filament bundle2.17E-03
35GO:0015935: small ribosomal subunit2.89E-03
36GO:0009522: photosystem I5.10E-03
37GO:0009986: cell surface6.58E-03
38GO:0042807: central vacuole6.58E-03
39GO:0009706: chloroplast inner membrane7.20E-03
40GO:0009536: plastid7.87E-03
41GO:0030529: intracellular ribonucleoprotein complex8.49E-03
42GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.79E-03
43GO:0010287: plastoglobule8.96E-03
44GO:0008180: COP9 signalosome9.98E-03
45GO:0042644: chloroplast nucleoid9.98E-03
46GO:0015934: large ribosomal subunit1.29E-02
47GO:0005884: actin filament1.39E-02
48GO:0030076: light-harvesting complex1.98E-02
49GO:0043234: protein complex2.14E-02
50GO:0005768: endosome3.30E-02
51GO:0005871: kinesin complex3.37E-02
52GO:0022625: cytosolic large ribosomal subunit3.50E-02
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Gene type



Gene DE type