co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G46910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
5	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
6	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
7	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
8	GO:0009773: photosynthetic electron transport in photosystem I	4.63E-13
9	GO:0010027: thylakoid membrane organization	7.38E-08
10	GO:0015979: photosynthesis	2.51E-07
11	GO:0010205: photoinhibition	1.87E-05
12	GO:0015994: chlorophyll metabolic process	5.37E-05
13	GO:0010207: photosystem II assembly	5.88E-05
14	GO:0042549: photosystem II stabilization	1.23E-04
15	GO:0010028: xanthophyll cycle	2.84E-04
16	GO:0034337: RNA folding	2.84E-04
17	GO:0071588: hydrogen peroxide mediated signaling pathway	2.84E-04
18	GO:0000305: response to oxygen radical	2.84E-04
19	GO:0043953: protein transport by the Tat complex	2.84E-04
20	GO:1904966: positive regulation of vitamin E biosynthetic process	2.84E-04
21	GO:1904964: positive regulation of phytol biosynthetic process	2.84E-04
22	GO:0080051: cutin transport	2.84E-04
23	GO:0065002: intracellular protein transmembrane transport	2.84E-04
24	GO:0006106: fumarate metabolic process	2.84E-04
25	GO:0032544: plastid translation	3.44E-04
26	GO:0016122: xanthophyll metabolic process	6.25E-04
27	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.25E-04
28	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.25E-04
29	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.25E-04
30	GO:0015908: fatty acid transport	6.25E-04
31	GO:0035304: regulation of protein dephosphorylation	6.25E-04
32	GO:0080005: photosystem stoichiometry adjustment	6.25E-04
33	GO:0071457: cellular response to ozone	6.25E-04
34	GO:0018026: peptidyl-lysine monomethylation	6.25E-04
35	GO:0015995: chlorophyll biosynthetic process	6.98E-04
36	GO:0005983: starch catabolic process	7.56E-04
37	GO:0006094: gluconeogenesis	8.57E-04
38	GO:0009735: response to cytokinin	9.24E-04
39	GO:1902448: positive regulation of shade avoidance	1.01E-03
40	GO:0006000: fructose metabolic process	1.01E-03
41	GO:0090391: granum assembly	1.01E-03
42	GO:0006518: peptide metabolic process	1.01E-03
43	GO:0051604: protein maturation	1.01E-03
44	GO:0016050: vesicle organization	1.01E-03
45	GO:0006833: water transport	1.19E-03
46	GO:0071484: cellular response to light intensity	1.45E-03
47	GO:0009152: purine ribonucleotide biosynthetic process	1.45E-03
48	GO:0046653: tetrahydrofolate metabolic process	1.45E-03
49	GO:0080170: hydrogen peroxide transmembrane transport	1.45E-03
50	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.45E-03
51	GO:1901332: negative regulation of lateral root development	1.45E-03
52	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.45E-03
53	GO:0010109: regulation of photosynthesis	1.94E-03
54	GO:0071486: cellular response to high light intensity	1.94E-03
55	GO:0009765: photosynthesis, light harvesting	1.94E-03
56	GO:0006109: regulation of carbohydrate metabolic process	1.94E-03
57	GO:0045727: positive regulation of translation	1.94E-03
58	GO:0006749: glutathione metabolic process	1.94E-03
59	GO:0010021: amylopectin biosynthetic process	1.94E-03
60	GO:0010222: stem vascular tissue pattern formation	1.94E-03
61	GO:0042335: cuticle development	2.42E-03
62	GO:0034220: ion transmembrane transport	2.42E-03
63	GO:0032957: inositol trisphosphate metabolic process	2.48E-03
64	GO:0071493: cellular response to UV-B	2.48E-03
65	GO:0032543: mitochondrial translation	2.48E-03
66	GO:0019252: starch biosynthetic process	3.01E-03
67	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.06E-03
68	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.06E-03
69	GO:0016554: cytidine to uridine editing	3.06E-03
70	GO:0009913: epidermal cell differentiation	3.06E-03
71	GO:0006810: transport	3.12E-03
72	GO:1901259: chloroplast rRNA processing	3.68E-03
73	GO:0010019: chloroplast-nucleus signaling pathway	3.68E-03
74	GO:0009416: response to light stimulus	4.15E-03
75	GO:0010196: nonphotochemical quenching	4.34E-03
76	GO:1900057: positive regulation of leaf senescence	4.34E-03
77	GO:0048564: photosystem I assembly	5.03E-03
78	GO:0008610: lipid biosynthetic process	5.03E-03
79	GO:0009642: response to light intensity	5.03E-03
80	GO:0030091: protein repair	5.03E-03
81	GO:0006605: protein targeting	5.03E-03
82	GO:0010492: maintenance of shoot apical meristem identity	5.03E-03
83	GO:0006002: fructose 6-phosphate metabolic process	5.77E-03
84	GO:0071482: cellular response to light stimulus	5.77E-03
85	GO:0019430: removal of superoxide radicals	5.77E-03
86	GO:0018298: protein-chromophore linkage	6.06E-03
87	GO:0055085: transmembrane transport	6.30E-03
88	GO:0048507: meristem development	6.54E-03
89	GO:0010206: photosystem II repair	6.54E-03
90	GO:0000373: Group II intron splicing	6.54E-03
91	GO:0009631: cold acclimation	7.01E-03
92	GO:0009638: phototropism	7.35E-03
93	GO:1900865: chloroplast RNA modification	7.35E-03
94	GO:0055114: oxidation-reduction process	7.66E-03
95	GO:0007166: cell surface receptor signaling pathway	7.96E-03
96	GO:0034599: cellular response to oxidative stress	8.04E-03
97	GO:0046856: phosphatidylinositol dephosphorylation	9.06E-03
98	GO:0000038: very long-chain fatty acid metabolic process	9.06E-03
99	GO:0019684: photosynthesis, light reaction	9.06E-03
100	GO:0043085: positive regulation of catalytic activity	9.06E-03
101	GO:0005975: carbohydrate metabolic process	1.00E-02
102	GO:0009718: anthocyanin-containing compound biosynthetic process	1.09E-02
103	GO:0005986: sucrose biosynthetic process	1.09E-02
104	GO:0010588: cotyledon vascular tissue pattern formation	1.09E-02
105	GO:0009785: blue light signaling pathway	1.09E-02
106	GO:0010628: positive regulation of gene expression	1.09E-02
107	GO:0006108: malate metabolic process	1.09E-02
108	GO:0006855: drug transmembrane transport	1.16E-02
109	GO:0019253: reductive pentose-phosphate cycle	1.19E-02
110	GO:0005985: sucrose metabolic process	1.29E-02
111	GO:0071732: cellular response to nitric oxide	1.29E-02
112	GO:0006364: rRNA processing	1.34E-02
113	GO:0010025: wax biosynthetic process	1.39E-02
114	GO:0006636: unsaturated fatty acid biosynthetic process	1.39E-02
115	GO:0009833: plant-type primary cell wall biogenesis	1.39E-02
116	GO:0019953: sexual reproduction	1.60E-02
117	GO:0008299: isoprenoid biosynthetic process	1.60E-02
118	GO:0006418: tRNA aminoacylation for protein translation	1.60E-02
119	GO:0009768: photosynthesis, light harvesting in photosystem I	1.60E-02
120	GO:0016226: iron-sulfur cluster assembly	1.83E-02
121	GO:0035428: hexose transmembrane transport	1.83E-02
122	GO:0045454: cell redox homeostasis	1.93E-02
123	GO:0009686: gibberellin biosynthetic process	1.95E-02
124	GO:0071369: cellular response to ethylene stimulus	1.95E-02
125	GO:0009306: protein secretion	2.07E-02
126	GO:0000413: protein peptidyl-prolyl isomerization	2.31E-02
127	GO:0046323: glucose import	2.44E-02
128	GO:0010268: brassinosteroid homeostasis	2.44E-02
129	GO:0071472: cellular response to salt stress	2.44E-02
130	GO:0006662: glycerol ether metabolic process	2.44E-02
131	GO:0042744: hydrogen peroxide catabolic process	2.73E-02
132	GO:0016132: brassinosteroid biosynthetic process	2.83E-02
133	GO:0000302: response to reactive oxygen species	2.83E-02
134	GO:0008152: metabolic process	2.84E-02
135	GO:0016032: viral process	2.97E-02
136	GO:0006633: fatty acid biosynthetic process	3.01E-02
137	GO:0030163: protein catabolic process	3.11E-02
138	GO:0071281: cellular response to iron ion	3.11E-02
139	GO:0009567: double fertilization forming a zygote and endosperm	3.25E-02
140	GO:0016125: sterol metabolic process	3.25E-02
141	GO:0071805: potassium ion transmembrane transport	3.39E-02
142	GO:0009607: response to biotic stimulus	3.83E-02
143	GO:0042128: nitrate assimilation	3.98E-02
144	GO:0030244: cellulose biosynthetic process	4.45E-02
145	GO:0000160: phosphorelay signal transduction system	4.60E-02
146	GO:0010311: lateral root formation	4.60E-02
147	GO:0010218: response to far red light	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0010303: limit dextrinase activity	0.00E+00
3	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0051060: pullulanase activity	0.00E+00
6	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
7	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
8	GO:0004823: leucine-tRNA ligase activity	0.00E+00
9	GO:0004333: fumarate hydratase activity	2.84E-04
10	GO:0050139: nicotinate-N-glucosyltransferase activity	2.84E-04
11	GO:0050308: sugar-phosphatase activity	2.84E-04
12	GO:0010242: oxygen evolving activity	2.84E-04
13	GO:0051777: ent-kaurenoate oxidase activity	2.84E-04
14	GO:0004856: xylulokinase activity	2.84E-04
15	GO:0045485: omega-6 fatty acid desaturase activity	2.84E-04
16	GO:0019203: carbohydrate phosphatase activity	2.84E-04
17	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.84E-04
18	GO:0015245: fatty acid transporter activity	2.84E-04
19	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.65E-04
20	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.25E-04
21	GO:0033201: alpha-1,4-glucan synthase activity	6.25E-04
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.25E-04
23	GO:0016630: protochlorophyllide reductase activity	6.25E-04
24	GO:0004362: glutathione-disulfide reductase activity	6.25E-04
25	GO:0047746: chlorophyllase activity	6.25E-04
26	GO:0016787: hydrolase activity	8.41E-04
27	GO:0004565: beta-galactosidase activity	8.57E-04
28	GO:0004222: metalloendopeptidase activity	8.97E-04
29	GO:0008266: poly(U) RNA binding	9.62E-04
30	GO:0008864: formyltetrahydrofolate deformylase activity	1.01E-03
31	GO:0047325: inositol tetrakisphosphate 1-kinase activity	1.01E-03
32	GO:0004373: glycogen (starch) synthase activity	1.01E-03
33	GO:0002161: aminoacyl-tRNA editing activity	1.01E-03
34	GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity	1.01E-03
35	GO:0004751: ribose-5-phosphate isomerase activity	1.01E-03
36	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.01E-03
37	GO:0070402: NADPH binding	1.01E-03
38	GO:0005528: FK506 binding	1.32E-03
39	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	1.45E-03
40	GO:0019201: nucleotide kinase activity	1.45E-03
41	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.45E-03
42	GO:0016851: magnesium chelatase activity	1.45E-03
43	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.45E-03
44	GO:0004176: ATP-dependent peptidase activity	1.60E-03
45	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.78E-03
46	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.94E-03
47	GO:0080032: methyl jasmonate esterase activity	1.94E-03
48	GO:0009011: starch synthase activity	1.94E-03
49	GO:0043495: protein anchor	1.94E-03
50	GO:0016279: protein-lysine N-methyltransferase activity	1.94E-03
51	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.48E-03
52	GO:0003959: NADPH dehydrogenase activity	2.48E-03
53	GO:2001070: starch binding	3.06E-03
54	GO:0004332: fructose-bisphosphate aldolase activity	3.06E-03
55	GO:0004130: cytochrome-c peroxidase activity	3.06E-03
56	GO:0004784: superoxide dismutase activity	3.06E-03
57	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	3.06E-03
58	GO:0042578: phosphoric ester hydrolase activity	3.06E-03
59	GO:0004556: alpha-amylase activity	3.06E-03
60	GO:0016688: L-ascorbate peroxidase activity	3.06E-03
61	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.68E-03
62	GO:0004017: adenylate kinase activity	3.68E-03
63	GO:0008237: metallopeptidase activity	4.14E-03
64	GO:0019899: enzyme binding	4.34E-03
65	GO:0019843: rRNA binding	4.45E-03
66	GO:0015250: water channel activity	4.64E-03
67	GO:0016168: chlorophyll binding	4.91E-03
68	GO:0043022: ribosome binding	5.03E-03
69	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	6.13E-03
70	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.54E-03
71	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.54E-03
72	GO:0008047: enzyme activator activity	8.19E-03
73	GO:0047372: acylglycerol lipase activity	9.06E-03
74	GO:0042802: identical protein binding	9.10E-03
75	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	9.96E-03
76	GO:0016788: hydrolase activity, acting on ester bonds	1.20E-02
77	GO:0031409: pigment binding	1.39E-02
78	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.39E-02
79	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.39E-02
80	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.39E-02
81	GO:0051536: iron-sulfur cluster binding	1.50E-02
82	GO:0004857: enzyme inhibitor activity	1.50E-02
83	GO:0043424: protein histidine kinase binding	1.60E-02
84	GO:0015079: potassium ion transmembrane transporter activity	1.60E-02
85	GO:0016760: cellulose synthase (UDP-forming) activity	1.95E-02
86	GO:0022891: substrate-specific transmembrane transporter activity	1.95E-02
87	GO:0016746: transferase activity, transferring acyl groups	1.97E-02
88	GO:0004812: aminoacyl-tRNA ligase activity	2.19E-02
89	GO:0047134: protein-disulfide reductase activity	2.19E-02
90	GO:0016491: oxidoreductase activity	2.26E-02
91	GO:0004791: thioredoxin-disulfide reductase activity	2.57E-02
92	GO:0016853: isomerase activity	2.57E-02
93	GO:0005355: glucose transmembrane transporter activity	2.57E-02
94	GO:0050662: coenzyme binding	2.57E-02
95	GO:0019901: protein kinase binding	2.70E-02
96	GO:0004672: protein kinase activity	2.72E-02
97	GO:0048038: quinone binding	2.83E-02
98	GO:0004518: nuclease activity	2.97E-02
99	GO:0020037: heme binding	3.07E-02
100	GO:0000156: phosphorelay response regulator activity	3.11E-02
101	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.11E-02
102	GO:0016759: cellulose synthase activity	3.25E-02
103	GO:0004721: phosphoprotein phosphatase activity	4.13E-02
104	GO:0008236: serine-type peptidase activity	4.29E-02
105	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.45E-02
106	GO:0015238: drug transmembrane transporter activity	4.60E-02
107	GO:0005524: ATP binding	4.70E-02
108	GO:0003824: catalytic activity	4.85E-02
109	GO:0008168: methyltransferase activity	4.90E-02
110	GO:0030145: manganese ion binding	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009507: chloroplast	4.77E-48
4	GO:0009535: chloroplast thylakoid membrane	1.11E-28
5	GO:0009534: chloroplast thylakoid	5.20E-26
6	GO:0009570: chloroplast stroma	1.96E-16
7	GO:0009941: chloroplast envelope	2.89E-14
8	GO:0009579: thylakoid	1.99E-08
9	GO:0009543: chloroplast thylakoid lumen	4.03E-08
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.90E-07
11	GO:0031977: thylakoid lumen	6.54E-07
12	GO:0010287: plastoglobule	1.00E-05
13	GO:0045239: tricarboxylic acid cycle enzyme complex	2.84E-04
14	GO:0031361: integral component of thylakoid membrane	2.84E-04
15	GO:0009515: granal stacked thylakoid	2.84E-04
16	GO:0016021: integral component of membrane	8.91E-04
17	GO:0030095: chloroplast photosystem II	9.62E-04
18	GO:0010007: magnesium chelatase complex	1.01E-03
19	GO:0009897: external side of plasma membrane	1.01E-03
20	GO:0033281: TAT protein transport complex	1.01E-03
21	GO:0009654: photosystem II oxygen evolving complex	1.45E-03
22	GO:0042651: thylakoid membrane	1.45E-03
23	GO:0009526: plastid envelope	1.94E-03
24	GO:0055035: plastid thylakoid membrane	2.48E-03
25	GO:0009522: photosystem I	2.80E-03
26	GO:0019898: extrinsic component of membrane	3.01E-03
27	GO:0009706: chloroplast inner membrane	3.34E-03
28	GO:0031969: chloroplast membrane	3.49E-03
29	GO:0009533: chloroplast stromal thylakoid	4.34E-03
30	GO:0009501: amyloplast	5.03E-03
31	GO:0008180: COP9 signalosome	6.54E-03
32	GO:0032040: small-subunit processome	9.96E-03
33	GO:0009508: plastid chromosome	1.09E-02
34	GO:0030076: light-harvesting complex	1.29E-02
35	GO:0048046: apoplast	2.16E-02
36	GO:0009523: photosystem II	2.70E-02
37	GO:0016020: membrane	2.87E-02
38	GO:0010319: stromule	3.39E-02
39	GO:0009295: nucleoid	3.39E-02
40	GO:0019005: SCF ubiquitin ligase complex	4.45E-02
41	GO:0005773: vacuole	4.61E-02
42	GO:0015934: large ribosomal subunit	4.93E-02