GO Enrichment Analysis of Co-expressed Genes with
AT2G46820
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:2000505: regulation of energy homeostasis | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 4 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 5 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 6 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 7 | GO:0015979: photosynthesis | 7.53E-13 |
| 8 | GO:0090391: granum assembly | 6.65E-09 |
| 9 | GO:0006412: translation | 1.66E-08 |
| 10 | GO:0032544: plastid translation | 2.16E-08 |
| 11 | GO:0010207: photosystem II assembly | 2.95E-07 |
| 12 | GO:0042254: ribosome biogenesis | 8.72E-07 |
| 13 | GO:0009735: response to cytokinin | 2.93E-06 |
| 14 | GO:0010206: photosystem II repair | 3.91E-06 |
| 15 | GO:0010027: thylakoid membrane organization | 1.13E-05 |
| 16 | GO:0015995: chlorophyll biosynthetic process | 1.59E-05 |
| 17 | GO:0006655: phosphatidylglycerol biosynthetic process | 5.33E-05 |
| 18 | GO:0009306: protein secretion | 6.48E-05 |
| 19 | GO:0009772: photosynthetic electron transport in photosystem II | 9.92E-05 |
| 20 | GO:0010196: nonphotochemical quenching | 9.92E-05 |
| 21 | GO:0010480: microsporocyte differentiation | 1.69E-04 |
| 22 | GO:0042371: vitamin K biosynthetic process | 1.69E-04 |
| 23 | GO:1902458: positive regulation of stomatal opening | 1.69E-04 |
| 24 | GO:0034337: RNA folding | 1.69E-04 |
| 25 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.69E-04 |
| 26 | GO:0010205: photoinhibition | 2.33E-04 |
| 27 | GO:0016024: CDP-diacylglycerol biosynthetic process | 3.66E-04 |
| 28 | GO:0010541: acropetal auxin transport | 3.83E-04 |
| 29 | GO:0018026: peptidyl-lysine monomethylation | 3.83E-04 |
| 30 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 3.83E-04 |
| 31 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.83E-04 |
| 32 | GO:0010160: formation of animal organ boundary | 6.25E-04 |
| 33 | GO:0006518: peptide metabolic process | 6.25E-04 |
| 34 | GO:0009658: chloroplast organization | 8.13E-04 |
| 35 | GO:0051513: regulation of monopolar cell growth | 8.93E-04 |
| 36 | GO:0071484: cellular response to light intensity | 8.93E-04 |
| 37 | GO:0009102: biotin biosynthetic process | 8.93E-04 |
| 38 | GO:0080170: hydrogen peroxide transmembrane transport | 8.93E-04 |
| 39 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 8.93E-04 |
| 40 | GO:1901332: negative regulation of lateral root development | 8.93E-04 |
| 41 | GO:0048443: stamen development | 1.01E-03 |
| 42 | GO:0042335: cuticle development | 1.17E-03 |
| 43 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 1.18E-03 |
| 44 | GO:0045727: positive regulation of translation | 1.18E-03 |
| 45 | GO:0030104: water homeostasis | 1.18E-03 |
| 46 | GO:0010236: plastoquinone biosynthetic process | 1.50E-03 |
| 47 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.50E-03 |
| 48 | GO:0000302: response to reactive oxygen species | 1.54E-03 |
| 49 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.85E-03 |
| 50 | GO:0060918: auxin transport | 1.85E-03 |
| 51 | GO:0010019: chloroplast-nucleus signaling pathway | 2.22E-03 |
| 52 | GO:1901259: chloroplast rRNA processing | 2.22E-03 |
| 53 | GO:0042372: phylloquinone biosynthetic process | 2.22E-03 |
| 54 | GO:0017148: negative regulation of translation | 2.22E-03 |
| 55 | GO:0048437: floral organ development | 2.61E-03 |
| 56 | GO:1900057: positive regulation of leaf senescence | 2.61E-03 |
| 57 | GO:0006605: protein targeting | 3.02E-03 |
| 58 | GO:2000070: regulation of response to water deprivation | 3.02E-03 |
| 59 | GO:0048564: photosystem I assembly | 3.02E-03 |
| 60 | GO:0008610: lipid biosynthetic process | 3.02E-03 |
| 61 | GO:0034599: cellular response to oxidative stress | 3.81E-03 |
| 62 | GO:0048589: developmental growth | 3.91E-03 |
| 63 | GO:0009245: lipid A biosynthetic process | 3.91E-03 |
| 64 | GO:0006535: cysteine biosynthetic process from serine | 4.87E-03 |
| 65 | GO:1903507: negative regulation of nucleic acid-templated transcription | 5.38E-03 |
| 66 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.38E-03 |
| 67 | GO:0048229: gametophyte development | 5.38E-03 |
| 68 | GO:0009773: photosynthetic electron transport in photosystem I | 5.38E-03 |
| 69 | GO:0008361: regulation of cell size | 5.91E-03 |
| 70 | GO:0010152: pollen maturation | 5.91E-03 |
| 71 | GO:0006006: glucose metabolic process | 6.46E-03 |
| 72 | GO:0010075: regulation of meristem growth | 6.46E-03 |
| 73 | GO:0010540: basipetal auxin transport | 7.02E-03 |
| 74 | GO:0009934: regulation of meristem structural organization | 7.02E-03 |
| 75 | GO:0019253: reductive pentose-phosphate cycle | 7.02E-03 |
| 76 | GO:0006636: unsaturated fatty acid biosynthetic process | 8.20E-03 |
| 77 | GO:0019344: cysteine biosynthetic process | 8.81E-03 |
| 78 | GO:0000027: ribosomal large subunit assembly | 8.81E-03 |
| 79 | GO:0016114: terpenoid biosynthetic process | 1.01E-02 |
| 80 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.08E-02 |
| 81 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.14E-02 |
| 82 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.28E-02 |
| 83 | GO:0042744: hydrogen peroxide catabolic process | 1.29E-02 |
| 84 | GO:0009790: embryo development | 1.32E-02 |
| 85 | GO:0034220: ion transmembrane transport | 1.36E-02 |
| 86 | GO:0000413: protein peptidyl-prolyl isomerization | 1.36E-02 |
| 87 | GO:0048653: anther development | 1.36E-02 |
| 88 | GO:0006633: fatty acid biosynthetic process | 1.42E-02 |
| 89 | GO:0009958: positive gravitropism | 1.43E-02 |
| 90 | GO:0009734: auxin-activated signaling pathway | 1.50E-02 |
| 91 | GO:0015986: ATP synthesis coupled proton transport | 1.51E-02 |
| 92 | GO:0009733: response to auxin | 1.67E-02 |
| 93 | GO:0030163: protein catabolic process | 1.82E-02 |
| 94 | GO:0009828: plant-type cell wall loosening | 1.90E-02 |
| 95 | GO:0009567: double fertilization forming a zygote and endosperm | 1.90E-02 |
| 96 | GO:0009639: response to red or far red light | 1.90E-02 |
| 97 | GO:0016126: sterol biosynthetic process | 2.16E-02 |
| 98 | GO:0009409: response to cold | 2.21E-02 |
| 99 | GO:0009627: systemic acquired resistance | 2.33E-02 |
| 100 | GO:0009817: defense response to fungus, incompatible interaction | 2.61E-02 |
| 101 | GO:0010311: lateral root formation | 2.70E-02 |
| 102 | GO:0010218: response to far red light | 2.79E-02 |
| 103 | GO:0009631: cold acclimation | 2.89E-02 |
| 104 | GO:0048527: lateral root development | 2.89E-02 |
| 105 | GO:0080167: response to karrikin | 3.00E-02 |
| 106 | GO:0016051: carbohydrate biosynthetic process | 3.08E-02 |
| 107 | GO:0009637: response to blue light | 3.08E-02 |
| 108 | GO:0030001: metal ion transport | 3.38E-02 |
| 109 | GO:0045454: cell redox homeostasis | 3.59E-02 |
| 110 | GO:0009926: auxin polar transport | 3.69E-02 |
| 111 | GO:0009640: photomorphogenesis | 3.69E-02 |
| 112 | GO:0006855: drug transmembrane transport | 4.12E-02 |
| 113 | GO:0032259: methylation | 4.23E-02 |
| 114 | GO:0031347: regulation of defense response | 4.23E-02 |
| 115 | GO:0009664: plant-type cell wall organization | 4.34E-02 |
| 116 | GO:0006364: rRNA processing | 4.57E-02 |
| 117 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.68E-02 |
| 118 | GO:0009793: embryo development ending in seed dormancy | 4.81E-02 |
| 119 | GO:0042742: defense response to bacterium | 4.83E-02 |
| 120 | GO:0008152: metabolic process | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 2 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 3 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 4 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 5 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 6 | GO:0019843: rRNA binding | 6.05E-11 |
| 7 | GO:0003735: structural constituent of ribosome | 2.42E-09 |
| 8 | GO:0016851: magnesium chelatase activity | 3.24E-08 |
| 9 | GO:0005528: FK506 binding | 6.47E-07 |
| 10 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.79E-06 |
| 11 | GO:0043023: ribosomal large subunit binding | 1.19E-05 |
| 12 | GO:0004130: cytochrome-c peroxidase activity | 5.33E-05 |
| 13 | GO:0004163: diphosphomevalonate decarboxylase activity | 1.69E-04 |
| 14 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.69E-04 |
| 15 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.69E-04 |
| 16 | GO:0045485: omega-6 fatty acid desaturase activity | 1.69E-04 |
| 17 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 3.83E-04 |
| 18 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.83E-04 |
| 19 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 6.25E-04 |
| 20 | GO:0008097: 5S rRNA binding | 8.93E-04 |
| 21 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.18E-03 |
| 22 | GO:0004659: prenyltransferase activity | 1.18E-03 |
| 23 | GO:0016279: protein-lysine N-methyltransferase activity | 1.18E-03 |
| 24 | GO:0010011: auxin binding | 1.18E-03 |
| 25 | GO:0052793: pectin acetylesterase activity | 1.18E-03 |
| 26 | GO:0004040: amidase activity | 1.50E-03 |
| 27 | GO:0016688: L-ascorbate peroxidase activity | 1.85E-03 |
| 28 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.85E-03 |
| 29 | GO:0031177: phosphopantetheine binding | 1.85E-03 |
| 30 | GO:0004124: cysteine synthase activity | 2.22E-03 |
| 31 | GO:0004017: adenylate kinase activity | 2.22E-03 |
| 32 | GO:0000035: acyl binding | 2.22E-03 |
| 33 | GO:0008236: serine-type peptidase activity | 2.74E-03 |
| 34 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 3.02E-03 |
| 35 | GO:0015020: glucuronosyltransferase activity | 4.87E-03 |
| 36 | GO:0031072: heat shock protein binding | 6.46E-03 |
| 37 | GO:0004565: beta-galactosidase activity | 6.46E-03 |
| 38 | GO:0010329: auxin efflux transmembrane transporter activity | 6.46E-03 |
| 39 | GO:0008266: poly(U) RNA binding | 7.02E-03 |
| 40 | GO:0003714: transcription corepressor activity | 8.81E-03 |
| 41 | GO:0043424: protein histidine kinase binding | 9.44E-03 |
| 42 | GO:0033612: receptor serine/threonine kinase binding | 1.01E-02 |
| 43 | GO:0004707: MAP kinase activity | 1.01E-02 |
| 44 | GO:0030570: pectate lyase activity | 1.14E-02 |
| 45 | GO:0003756: protein disulfide isomerase activity | 1.21E-02 |
| 46 | GO:0016829: lyase activity | 1.22E-02 |
| 47 | GO:0004252: serine-type endopeptidase activity | 1.25E-02 |
| 48 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.43E-02 |
| 49 | GO:0050662: coenzyme binding | 1.51E-02 |
| 50 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 1.99E-02 |
| 51 | GO:0042802: identical protein binding | 1.99E-02 |
| 52 | GO:0016491: oxidoreductase activity | 2.12E-02 |
| 53 | GO:0015250: water channel activity | 2.16E-02 |
| 54 | GO:0016168: chlorophyll binding | 2.24E-02 |
| 55 | GO:0008375: acetylglucosaminyltransferase activity | 2.33E-02 |
| 56 | GO:0016788: hydrolase activity, acting on ester bonds | 2.47E-02 |
| 57 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.61E-02 |
| 58 | GO:0004222: metalloendopeptidase activity | 2.79E-02 |
| 59 | GO:0030145: manganese ion binding | 2.89E-02 |
| 60 | GO:0052689: carboxylic ester hydrolase activity | 3.31E-02 |
| 61 | GO:0050661: NADP binding | 3.38E-02 |
| 62 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.38E-02 |
| 63 | GO:0004185: serine-type carboxypeptidase activity | 3.69E-02 |
| 64 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.91E-02 |
| 65 | GO:0005198: structural molecule activity | 4.01E-02 |
| 66 | GO:0051287: NAD binding | 4.23E-02 |
| 67 | GO:0016787: hydrolase activity | 4.31E-02 |
| 68 | GO:0005515: protein binding | 4.33E-02 |
| 69 | GO:0005509: calcium ion binding | 4.37E-02 |
| 70 | GO:0003777: microtubule motor activity | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0043224: nuclear SCF ubiquitin ligase complex | 0.00E+00 |
| 3 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 2.28E-44 |
| 5 | GO:0009570: chloroplast stroma | 9.20E-35 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 1.98E-31 |
| 7 | GO:0009534: chloroplast thylakoid | 2.64E-30 |
| 8 | GO:0009941: chloroplast envelope | 6.62E-28 |
| 9 | GO:0009579: thylakoid | 4.47E-24 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 3.06E-19 |
| 11 | GO:0031977: thylakoid lumen | 6.29E-13 |
| 12 | GO:0005840: ribosome | 3.93E-11 |
| 13 | GO:0030095: chloroplast photosystem II | 3.14E-09 |
| 14 | GO:0010007: magnesium chelatase complex | 6.65E-09 |
| 15 | GO:0009533: chloroplast stromal thylakoid | 1.23E-06 |
| 16 | GO:0033281: TAT protein transport complex | 5.12E-06 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 3.68E-05 |
| 18 | GO:0019898: extrinsic component of membrane | 1.14E-04 |
| 19 | GO:0009538: photosystem I reaction center | 1.27E-04 |
| 20 | GO:0043674: columella | 1.69E-04 |
| 21 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.69E-04 |
| 22 | GO:0010287: plastoglobule | 2.27E-04 |
| 23 | GO:0009509: chromoplast | 6.25E-04 |
| 24 | GO:0009522: photosystem I | 1.35E-03 |
| 25 | GO:0009523: photosystem II | 1.44E-03 |
| 26 | GO:0009536: plastid | 1.50E-03 |
| 27 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.85E-03 |
| 28 | GO:0009295: nucleoid | 1.98E-03 |
| 29 | GO:0042807: central vacuole | 2.61E-03 |
| 30 | GO:0016020: membrane | 3.40E-03 |
| 31 | GO:0042644: chloroplast nucleoid | 3.91E-03 |
| 32 | GO:0008180: COP9 signalosome | 3.91E-03 |
| 33 | GO:0032040: small-subunit processome | 5.91E-03 |
| 34 | GO:0031969: chloroplast membrane | 5.93E-03 |
| 35 | GO:0009508: plastid chromosome | 6.46E-03 |
| 36 | GO:0009706: chloroplast inner membrane | 9.00E-03 |
| 37 | GO:0015935: small ribosomal subunit | 1.01E-02 |
| 38 | GO:0010319: stromule | 1.99E-02 |
| 39 | GO:0019005: SCF ubiquitin ligase complex | 2.61E-02 |
| 40 | GO:0015934: large ribosomal subunit | 2.89E-02 |
| 41 | GO:0048046: apoplast | 3.50E-02 |
| 42 | GO:0000502: proteasome complex | 4.57E-02 |