Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G46550

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0030644: cellular chloride ion homeostasis0.00E+00
2GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
3GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
4GO:0015970: guanosine tetraphosphate biosynthetic process0.00E+00
5GO:0015812: gamma-aminobutyric acid transport5.34E-05
6GO:0032958: inositol phosphate biosynthetic process5.34E-05
7GO:0080065: 4-alpha-methyl-delta7-sterol oxidation5.34E-05
8GO:0010114: response to red light6.88E-05
9GO:0051170: nuclear import1.30E-04
10GO:1902884: positive regulation of response to oxidative stress1.30E-04
11GO:0061062: regulation of nematode larval development1.30E-04
12GO:0006883: cellular sodium ion homeostasis1.30E-04
13GO:0003333: amino acid transmembrane transport1.67E-04
14GO:0048511: rhythmic process1.67E-04
15GO:0010017: red or far-red light signaling pathway1.84E-04
16GO:1902448: positive regulation of shade avoidance2.22E-04
17GO:1901562: response to paraquat2.22E-04
18GO:0006020: inositol metabolic process3.25E-04
19GO:0010601: positive regulation of auxin biosynthetic process3.25E-04
20GO:0010600: regulation of auxin biosynthetic process4.35E-04
21GO:1901002: positive regulation of response to salt stress4.35E-04
22GO:0015846: polyamine transport4.35E-04
23GO:0030104: water homeostasis4.35E-04
24GO:0042594: response to starvation4.35E-04
25GO:2000306: positive regulation of photomorphogenesis4.35E-04
26GO:0009416: response to light stimulus4.52E-04
27GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA5.52E-04
28GO:0016123: xanthophyll biosynthetic process5.52E-04
29GO:0045962: positive regulation of development, heterochronic6.76E-04
30GO:0000160: phosphorelay signal transduction system6.77E-04
31GO:0010218: response to far red light7.10E-04
32GO:0010244: response to low fluence blue light stimulus by blue low-fluence system8.05E-04
33GO:0033962: cytoplasmic mRNA processing body assembly8.05E-04
34GO:0009861: jasmonic acid and ethylene-dependent systemic resistance8.05E-04
35GO:0048437: floral organ development9.40E-04
36GO:0009769: photosynthesis, light harvesting in photosystem II9.40E-04
37GO:0009645: response to low light intensity stimulus9.40E-04
38GO:0010038: response to metal ion9.40E-04
39GO:0010161: red light signaling pathway9.40E-04
40GO:0009640: photomorphogenesis1.03E-03
41GO:0010928: regulation of auxin mediated signaling pathway1.08E-03
42GO:0009704: de-etiolation1.08E-03
43GO:0009644: response to high light intensity1.11E-03
44GO:0006351: transcription, DNA-templated1.19E-03
45GO:0009827: plant-type cell wall modification1.23E-03
46GO:0010099: regulation of photomorphogenesis1.23E-03
47GO:0009414: response to water deprivation1.26E-03
48GO:0009408: response to heat1.35E-03
49GO:0090333: regulation of stomatal closure1.38E-03
50GO:0048354: mucilage biosynthetic process involved in seed coat development1.54E-03
51GO:0010162: seed dormancy process1.71E-03
52GO:0055062: phosphate ion homeostasis1.71E-03
53GO:0009688: abscisic acid biosynthetic process1.71E-03
54GO:0009641: shade avoidance1.71E-03
55GO:0009624: response to nematode1.93E-03
56GO:0016925: protein sumoylation2.06E-03
57GO:0009409: response to cold2.06E-03
58GO:0050826: response to freezing2.25E-03
59GO:0009718: anthocyanin-containing compound biosynthetic process2.25E-03
60GO:0009266: response to temperature stimulus2.43E-03
61GO:0090351: seedling development2.63E-03
62GO:0035556: intracellular signal transduction2.98E-03
63GO:0009768: photosynthesis, light harvesting in photosystem I3.24E-03
64GO:0007623: circadian rhythm3.30E-03
65GO:0009269: response to desiccation3.46E-03
66GO:0010431: seed maturation3.46E-03
67GO:0071215: cellular response to abscisic acid stimulus3.90E-03
68GO:0006355: regulation of transcription, DNA-templated3.96E-03
69GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.36E-03
70GO:0010182: sugar mediated signaling pathway4.84E-03
71GO:0006814: sodium ion transport5.09E-03
72GO:0009556: microsporogenesis5.34E-03
73GO:0006970: response to osmotic stress5.48E-03
74GO:0000302: response to reactive oxygen species5.60E-03
75GO:0048366: leaf development5.99E-03
76GO:0080167: response to karrikin6.31E-03
77GO:0019760: glucosinolate metabolic process6.39E-03
78GO:0006914: autophagy6.39E-03
79GO:0010286: heat acclimation6.66E-03
80GO:0044550: secondary metabolite biosynthetic process6.85E-03
81GO:0015979: photosynthesis7.20E-03
82GO:0016126: sterol biosynthetic process7.22E-03
83GO:0010029: regulation of seed germination7.50E-03
84GO:0045892: negative regulation of transcription, DNA-templated7.66E-03
85GO:0015995: chlorophyll biosynthetic process8.09E-03
86GO:0048573: photoperiodism, flowering8.09E-03
87GO:0009817: defense response to fungus, incompatible interaction8.68E-03
88GO:0018298: protein-chromophore linkage8.68E-03
89GO:0006629: lipid metabolic process9.31E-03
90GO:0009631: cold acclimation9.61E-03
91GO:0009637: response to blue light1.02E-02
92GO:0042542: response to hydrogen peroxide1.19E-02
93GO:0051707: response to other organism1.23E-02
94GO:0008643: carbohydrate transport1.30E-02
95GO:0009965: leaf morphogenesis1.33E-02
96GO:0042538: hyperosmotic salinity response1.44E-02
97GO:0009585: red, far-red light phototransduction1.51E-02
98GO:0006857: oligopeptide transport1.59E-02
99GO:0009738: abscisic acid-activated signaling pathway1.60E-02
100GO:0009611: response to wounding1.69E-02
101GO:0009737: response to abscisic acid1.78E-02
102GO:0009553: embryo sac development1.90E-02
103GO:0055085: transmembrane transport2.11E-02
104GO:0010150: leaf senescence2.87E-02
105GO:0010228: vegetative to reproductive phase transition of meristem2.96E-02
106GO:0009739: response to gibberellin3.11E-02
107GO:0010468: regulation of gene expression3.25E-02
108GO:0009826: unidimensional cell growth3.81E-02
109GO:0009658: chloroplast organization3.91E-02
110GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.67E-02
111GO:0016192: vesicle-mediated transport4.73E-02
RankGO TermAdjusted P value
1GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
2GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
3GO:0000828: inositol hexakisphosphate kinase activity5.34E-05
4GO:0015185: gamma-aminobutyric acid transmembrane transporter activity5.34E-05
5GO:0033857: diphosphoinositol-pentakisphosphate kinase activity5.34E-05
6GO:0000829: inositol heptakisphosphate kinase activity5.34E-05
7GO:0008728: GTP diphosphokinase activity1.30E-04
8GO:0015180: L-alanine transmembrane transporter activity1.30E-04
9GO:0019948: SUMO activating enzyme activity2.22E-04
10GO:0000254: C-4 methylsterol oxidase activity3.25E-04
11GO:0015181: arginine transmembrane transporter activity3.25E-04
12GO:0015203: polyamine transmembrane transporter activity3.25E-04
13GO:0015189: L-lysine transmembrane transporter activity3.25E-04
14GO:0000156: phosphorelay response regulator activity3.96E-04
15GO:0005313: L-glutamate transmembrane transporter activity4.35E-04
16GO:0005253: anion channel activity4.35E-04
17GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen5.52E-04
18GO:0004629: phospholipase C activity6.76E-04
19GO:0005247: voltage-gated chloride channel activity6.76E-04
20GO:0004435: phosphatidylinositol phospholipase C activity8.05E-04
21GO:0015293: symporter activity1.15E-03
22GO:0071949: FAD binding1.38E-03
23GO:0000989: transcription factor activity, transcription factor binding1.38E-03
24GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.38E-03
25GO:0015174: basic amino acid transmembrane transporter activity1.54E-03
26GO:0047372: acylglycerol lipase activity1.88E-03
27GO:0004565: beta-galactosidase activity2.25E-03
28GO:0004022: alcohol dehydrogenase (NAD) activity2.25E-03
29GO:0005315: inorganic phosphate transmembrane transporter activity2.25E-03
30GO:0003712: transcription cofactor activity2.63E-03
31GO:0031409: pigment binding2.83E-03
32GO:0015297: antiporter activity3.16E-03
33GO:0005351: sugar:proton symporter activity3.23E-03
34GO:0004707: MAP kinase activity3.46E-03
35GO:0008514: organic anion transmembrane transporter activity4.13E-03
36GO:0016853: isomerase activity5.09E-03
37GO:0016168: chlorophyll binding7.50E-03
38GO:0003824: catalytic activity7.65E-03
39GO:0005215: transporter activity7.72E-03
40GO:0005515: protein binding8.79E-03
41GO:0003993: acid phosphatase activity1.06E-02
42GO:0015171: amino acid transmembrane transporter activity1.63E-02
43GO:0045735: nutrient reservoir activity1.70E-02
44GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.32E-02
45GO:0015144: carbohydrate transmembrane transporter activity2.59E-02
46GO:0003677: DNA binding2.67E-02
47GO:0005506: iron ion binding3.30E-02
48GO:0003700: transcription factor activity, sequence-specific DNA binding4.42E-02
49GO:0004497: monooxygenase activity4.56E-02
50GO:0004672: protein kinase activity4.90E-02
RankGO TermAdjusted P value
1GO:0009898: cytoplasmic side of plasma membrane4.35E-04
2GO:0009517: PSII associated light-harvesting complex II4.35E-04
3GO:0000932: P-body5.00E-04
4GO:0034707: chloride channel complex6.76E-04
5GO:0034045: pre-autophagosomal structure membrane1.23E-03
6GO:0010494: cytoplasmic stress granule1.38E-03
7GO:0010287: plastoglobule2.28E-03
8GO:0030076: light-harvesting complex2.63E-03
9GO:0009522: photosystem I5.09E-03
10GO:0009523: photosystem II5.34E-03
11GO:0031969: chloroplast membrane6.31E-03
12GO:0016021: integral component of membrane1.19E-02
13GO:0005887: integral component of plasma membrane1.27E-02
14GO:0009941: chloroplast envelope1.36E-02
15GO:0031966: mitochondrial membrane1.44E-02
16GO:0016607: nuclear speck1.74E-02
17GO:0009535: chloroplast thylakoid membrane1.89E-02
18GO:0009579: thylakoid1.98E-02
19GO:0005623: cell2.32E-02
20GO:0005622: intracellular2.95E-02
21GO:0005774: vacuolar membrane3.26E-02
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Gene type



Gene DE type