GO Enrichment Analysis of Co-expressed Genes with
AT2G46280
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 2 | GO:0071433: cell wall repair | 0.00E+00 |
| 3 | GO:0006337: nucleosome disassembly | 0.00E+00 |
| 4 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 5 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 6 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 7 | GO:0006626: protein targeting to mitochondrion | 6.27E-09 |
| 8 | GO:0042254: ribosome biogenesis | 1.15E-07 |
| 9 | GO:0006412: translation | 7.35E-06 |
| 10 | GO:0006189: 'de novo' IMP biosynthetic process | 3.41E-05 |
| 11 | GO:0010162: seed dormancy process | 5.04E-05 |
| 12 | GO:0031120: snRNA pseudouridine synthesis | 5.34E-05 |
| 13 | GO:0031118: rRNA pseudouridine synthesis | 5.34E-05 |
| 14 | GO:0000494: box C/D snoRNA 3'-end processing | 5.34E-05 |
| 15 | GO:2000232: regulation of rRNA processing | 5.34E-05 |
| 16 | GO:1990258: histone glutamine methylation | 5.34E-05 |
| 17 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 1.30E-04 |
| 18 | GO:1905182: positive regulation of urease activity | 1.30E-04 |
| 19 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.30E-04 |
| 20 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.35E-04 |
| 21 | GO:0000027: ribosomal large subunit assembly | 1.35E-04 |
| 22 | GO:0007005: mitochondrion organization | 1.84E-04 |
| 23 | GO:0009294: DNA mediated transformation | 2.02E-04 |
| 24 | GO:1902626: assembly of large subunit precursor of preribosome | 2.22E-04 |
| 25 | GO:0043044: ATP-dependent chromatin remodeling | 2.22E-04 |
| 26 | GO:0045039: protein import into mitochondrial inner membrane | 2.22E-04 |
| 27 | GO:0010197: polar nucleus fusion | 2.81E-04 |
| 28 | GO:0009113: purine nucleobase biosynthetic process | 3.25E-04 |
| 29 | GO:0007004: telomere maintenance via telomerase | 3.25E-04 |
| 30 | GO:0006164: purine nucleotide biosynthetic process | 3.25E-04 |
| 31 | GO:0031365: N-terminal protein amino acid modification | 5.52E-04 |
| 32 | GO:0031167: rRNA methylation | 5.52E-04 |
| 33 | GO:0045040: protein import into mitochondrial outer membrane | 6.76E-04 |
| 34 | GO:0000741: karyogamy | 6.76E-04 |
| 35 | GO:0009423: chorismate biosynthetic process | 8.05E-04 |
| 36 | GO:0001522: pseudouridine synthesis | 1.08E-03 |
| 37 | GO:0001510: RNA methylation | 1.23E-03 |
| 38 | GO:0006364: rRNA processing | 1.37E-03 |
| 39 | GO:0007338: single fertilization | 1.38E-03 |
| 40 | GO:0016569: covalent chromatin modification | 1.82E-03 |
| 41 | GO:0009073: aromatic amino acid family biosynthetic process | 1.88E-03 |
| 42 | GO:0043085: positive regulation of catalytic activity | 1.88E-03 |
| 43 | GO:0016485: protein processing | 1.88E-03 |
| 44 | GO:0006913: nucleocytoplasmic transport | 1.88E-03 |
| 45 | GO:0071365: cellular response to auxin stimulus | 2.06E-03 |
| 46 | GO:0006820: anion transport | 2.06E-03 |
| 47 | GO:0006807: nitrogen compound metabolic process | 2.25E-03 |
| 48 | GO:0048467: gynoecium development | 2.43E-03 |
| 49 | GO:0046686: response to cadmium ion | 2.55E-03 |
| 50 | GO:0046688: response to copper ion | 2.63E-03 |
| 51 | GO:0010167: response to nitrate | 2.63E-03 |
| 52 | GO:0030150: protein import into mitochondrial matrix | 3.03E-03 |
| 53 | GO:0006338: chromatin remodeling | 3.03E-03 |
| 54 | GO:0006825: copper ion transport | 3.24E-03 |
| 55 | GO:0006457: protein folding | 3.86E-03 |
| 56 | GO:0008033: tRNA processing | 4.60E-03 |
| 57 | GO:0000413: protein peptidyl-prolyl isomerization | 4.60E-03 |
| 58 | GO:0009793: embryo development ending in seed dormancy | 4.65E-03 |
| 59 | GO:0009567: double fertilization forming a zygote and endosperm | 6.39E-03 |
| 60 | GO:0016049: cell growth | 8.38E-03 |
| 61 | GO:0006811: ion transport | 9.30E-03 |
| 62 | GO:0048527: lateral root development | 9.61E-03 |
| 63 | GO:0048364: root development | 9.71E-03 |
| 64 | GO:0045087: innate immune response | 1.02E-02 |
| 65 | GO:0009853: photorespiration | 1.02E-02 |
| 66 | GO:0006099: tricarboxylic acid cycle | 1.06E-02 |
| 67 | GO:0009744: response to sucrose | 1.23E-02 |
| 68 | GO:0000154: rRNA modification | 1.33E-02 |
| 69 | GO:0009846: pollen germination | 1.44E-02 |
| 70 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.55E-02 |
| 71 | GO:0009555: pollen development | 1.66E-02 |
| 72 | GO:0009553: embryo sac development | 1.90E-02 |
| 73 | GO:0006396: RNA processing | 1.98E-02 |
| 74 | GO:0006351: transcription, DNA-templated | 2.00E-02 |
| 75 | GO:0006511: ubiquitin-dependent protein catabolic process | 2.25E-02 |
| 76 | GO:0009790: embryo development | 2.55E-02 |
| 77 | GO:0006413: translational initiation | 2.73E-02 |
| 78 | GO:0009617: response to bacterium | 3.25E-02 |
| 79 | GO:0007049: cell cycle | 4.23E-02 |
| 80 | GO:0009723: response to ethylene | 4.34E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004637: phosphoribosylamine-glycine ligase activity | 0.00E+00 |
| 2 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 3 | GO:0004107: chorismate synthase activity | 0.00E+00 |
| 4 | GO:0030515: snoRNA binding | 7.42E-08 |
| 5 | GO:0003735: structural constituent of ribosome | 1.43E-07 |
| 6 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 6.97E-07 |
| 7 | GO:0001055: RNA polymerase II activity | 4.18E-05 |
| 8 | GO:0048037: cofactor binding | 5.34E-05 |
| 9 | GO:1990259: histone-glutamine methyltransferase activity | 5.34E-05 |
| 10 | GO:0004638: phosphoribosylaminoimidazole carboxylase activity | 5.34E-05 |
| 11 | GO:0001054: RNA polymerase I activity | 5.99E-05 |
| 12 | GO:0001056: RNA polymerase III activity | 7.04E-05 |
| 13 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 1.30E-04 |
| 14 | GO:0070034: telomerase RNA binding | 1.30E-04 |
| 15 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 1.30E-04 |
| 16 | GO:0004407: histone deacetylase activity | 1.35E-04 |
| 17 | GO:0008649: rRNA methyltransferase activity | 2.22E-04 |
| 18 | GO:0070180: large ribosomal subunit rRNA binding | 2.22E-04 |
| 19 | GO:0016151: nickel cation binding | 2.22E-04 |
| 20 | GO:0016531: copper chaperone activity | 2.22E-04 |
| 21 | GO:0046872: metal ion binding | 3.27E-04 |
| 22 | GO:0031369: translation initiation factor binding | 6.76E-04 |
| 23 | GO:0003723: RNA binding | 7.04E-04 |
| 24 | GO:0003746: translation elongation factor activity | 8.11E-04 |
| 25 | GO:0008235: metalloexopeptidase activity | 9.40E-04 |
| 26 | GO:0015288: porin activity | 1.08E-03 |
| 27 | GO:0008308: voltage-gated anion channel activity | 1.23E-03 |
| 28 | GO:0003924: GTPase activity | 1.35E-03 |
| 29 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.37E-03 |
| 30 | GO:0004177: aminopeptidase activity | 1.88E-03 |
| 31 | GO:0051082: unfolded protein binding | 1.93E-03 |
| 32 | GO:0031072: heat shock protein binding | 2.25E-03 |
| 33 | GO:0015266: protein channel activity | 2.25E-03 |
| 34 | GO:0003729: mRNA binding | 2.38E-03 |
| 35 | GO:0004298: threonine-type endopeptidase activity | 3.46E-03 |
| 36 | GO:0005507: copper ion binding | 4.35E-03 |
| 37 | GO:0003713: transcription coactivator activity | 4.84E-03 |
| 38 | GO:0010181: FMN binding | 5.09E-03 |
| 39 | GO:0050897: cobalt ion binding | 9.61E-03 |
| 40 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.37E-02 |
| 41 | GO:0000166: nucleotide binding | 1.66E-02 |
| 42 | GO:0019843: rRNA binding | 2.28E-02 |
| 43 | GO:0016829: lyase activity | 2.41E-02 |
| 44 | GO:0008565: protein transporter activity | 2.59E-02 |
| 45 | GO:0005525: GTP binding | 2.73E-02 |
| 46 | GO:0003743: translation initiation factor activity | 3.20E-02 |
| 47 | GO:0003676: nucleic acid binding | 4.03E-02 |
| 48 | GO:0003682: chromatin binding | 4.07E-02 |
| 49 | GO:0046983: protein dimerization activity | 4.47E-02 |
| 50 | GO:0008233: peptidase activity | 4.50E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 2 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 3 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 4 | GO:0005730: nucleolus | 4.23E-13 |
| 5 | GO:0005758: mitochondrial intermembrane space | 2.29E-06 |
| 6 | GO:0005840: ribosome | 2.66E-06 |
| 7 | GO:0022625: cytosolic large ribosomal subunit | 6.18E-06 |
| 8 | GO:0005747: mitochondrial respiratory chain complex I | 6.19E-06 |
| 9 | GO:0031428: box C/D snoRNP complex | 8.00E-06 |
| 10 | GO:0005742: mitochondrial outer membrane translocase complex | 2.72E-05 |
| 11 | GO:0005736: DNA-directed RNA polymerase I complex | 3.41E-05 |
| 12 | GO:0005666: DNA-directed RNA polymerase III complex | 4.18E-05 |
| 13 | GO:0015030: Cajal body | 4.18E-05 |
| 14 | GO:0000418: DNA-directed RNA polymerase IV complex | 5.04E-05 |
| 15 | GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m | 5.34E-05 |
| 16 | GO:0032040: small-subunit processome | 7.04E-05 |
| 17 | GO:0005665: DNA-directed RNA polymerase II, core complex | 7.04E-05 |
| 18 | GO:0005774: vacuolar membrane | 9.94E-05 |
| 19 | GO:0070545: PeBoW complex | 1.30E-04 |
| 20 | GO:0030089: phycobilisome | 1.30E-04 |
| 21 | GO:0005743: mitochondrial inner membrane | 1.58E-04 |
| 22 | GO:0005741: mitochondrial outer membrane | 1.67E-04 |
| 23 | GO:0005739: mitochondrion | 2.48E-04 |
| 24 | GO:0031429: box H/ACA snoRNP complex | 3.25E-04 |
| 25 | GO:0000228: nuclear chromosome | 5.52E-04 |
| 26 | GO:0005618: cell wall | 6.66E-04 |
| 27 | GO:0005773: vacuole | 1.18E-03 |
| 28 | GO:0046930: pore complex | 1.23E-03 |
| 29 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.88E-03 |
| 30 | GO:0022626: cytosolic ribosome | 2.63E-03 |
| 31 | GO:0000419: DNA-directed RNA polymerase V complex | 2.83E-03 |
| 32 | GO:0045271: respiratory chain complex I | 3.24E-03 |
| 33 | GO:0005839: proteasome core complex | 3.46E-03 |
| 34 | GO:0015935: small ribosomal subunit | 3.46E-03 |
| 35 | GO:0005829: cytosol | 3.61E-03 |
| 36 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 4.13E-03 |
| 37 | GO:0030529: intracellular ribonucleoprotein complex | 7.22E-03 |
| 38 | GO:0019005: SCF ubiquitin ligase complex | 8.68E-03 |
| 39 | GO:0015934: large ribosomal subunit | 9.61E-03 |
| 40 | GO:0031966: mitochondrial membrane | 1.44E-02 |
| 41 | GO:0000502: proteasome complex | 1.51E-02 |
| 42 | GO:0005654: nucleoplasm | 2.24E-02 |
| 43 | GO:0005759: mitochondrial matrix | 2.68E-02 |
| 44 | GO:0005622: intracellular | 2.95E-02 |
| 45 | GO:0022627: cytosolic small ribosomal subunit | 3.50E-02 |
| 46 | GO:0009536: plastid | 4.11E-02 |